Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Homo_20sapiens_20[refseq_20GCF_5F000001405.37_202017-06-14] 578 sequences; 3,253,848,404 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq31 111 1e-19 seq29 95.1 1e-14 seq46 86.0 6e-12 seq44 84.2 2e-11 >seq31 Length=133275309 Score = 111 bits (122), Expect = 1e-19 Identities = 141/194 (73%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 |||||||| || ||||||||||| || |||||| |||||| |||||||| |||| | Sbjct 124912666 GACTCTTTCTGGATGTTGTAGTCAGACAGGGTACGACCATCTTCCAGCTGTTTTCCGGCA 124912725 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 |||| | | ||| || || ||||| |||||||| || || || ||| || | Sbjct 124912726 AAGATCAACCTCTGCTGGTCAGGAGGGATGCCTTCCTTGTCTTGGATCTTTGCCTTGACA 124912785 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | || | || || ||||||||||||||| || | || ||||||||||| || || Sbjct 124912786 TTCTCAATGGTGTCACTCGGCTCCACTTCGAGAGTGATGGTCTTACCAGTCAGGGTCTTC 124912845 Query 132110 ATGAAAATCTGCAT 132123 | ||| |||||||| Sbjct 124912846 ACGAAGATCTGCAT 124912859 Score = 111 bits (122), Expect = 1e-19 Identities = 141/194 (73%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 |||||||| || ||||||||||| || |||||| |||||| |||||||| |||| | Sbjct 124913122 GACTCTTTCTGGATGTTGTAGTCAGACAGGGTACGACCATCTTCCAGCTGTTTTCCGGCA 124913181 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 |||| | | ||| ||||| ||||| |||||||| ||||| || ||| || | Sbjct 124913182 AAGATCAACCTCTGCTGATCAGGAGGAATGCCTTCCTTATCTTGGATCTTTGCCTTGACA 124913241 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | || | || || | |||||||| |||| || | || ||||||||||| || || Sbjct 124913242 TTCTCGATGGTGTCACTGGGCTCCACCTCGAGGGTGATGGTCTTACCAGTCAGGGTCTTC 124913301 Query 132110 ATGAAAATCTGCAT 132123 | ||| |||||||| Sbjct 124913302 ACGAAGATCTGCAT 124913315 Score = 107 bits (118), Expect = 2e-18 Identities = 155/219 (71%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 131905 CAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACG 131964 |||||||| ||||| || | | |||||||| || ||||||||||| || ||| || Sbjct 124911729 CAAGCGCAGGACCAAGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCG 124911788 Query 131965 CGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTC 132024 |||||| |||||||| || | | |||| | | ||| ||||| ||||| |||||||| Sbjct 124911789 TCCATCTTCCAGCTGTTTCCCAGCAAAGATCAACCTCTGCTGATCAGGAGGGATGCCTTC 124911848 Query 132025 TTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGT 132084 ||||| || ||| || | | || | || || | |||||||| |||| || Sbjct 124911849 CTTATCTTGGATCTTTGCCTTGACATTCTCGATGGTGTCACTGGGCTCCACCTCGAGGGT 124911908 Query 132085 CAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 | || ||||||||||| || || | ||| || ||||| Sbjct 124911909 GATGGTCTTACCAGTCAGGGTCTTCACGAAGATTTGCAT 124911947 Score = 107 bits (118), Expect = 2e-18 Identities = 140/194 (72%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 |||||||| || ||||||||||| || ||| ||| |||||| |||||||| || | | Sbjct 124913578 GACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTCCAGCTGTTTTCCAGCA 124913637 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 |||| || | ||| || || ||||| |||||||| ||||| || ||| || | Sbjct 124913638 AAGATCAGCCTCTGCTGGTCAGGAGGGATGCCTTCCTTATCTTGGATCTTTGCCTTGACA 124913697 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | || | || || | ||||| || |||| || | || |||||||||||||| || Sbjct 124913698 TTCTCGATGGTGTCACTGGGCTCAACCTCGAGGGTGATGGTCTTACCAGTCAGAGTCTTC 124913757 Query 132110 ATGAAAATCTGCAT 132123 | ||| |||||||| Sbjct 124913758 ACGAAGATCTGCAT 124913771 Score = 102 bits (112), Expect = 8e-17 Identities = 139/194 (72%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 |||||||| || ||||||||||| || ||| || |||||| |||||||| || | | Sbjct 124911982 GACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGTCCATCTTCCAGCTGTTTCCCAGCA 124912041 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 |||| | | ||| || || ||||| |||||||| || || || ||| || | Sbjct 124912042 AAGATCAACCTCTGCTGGTCAGGAGGGATGCCTTCCTTGTCTTGGATCTTTGCCTTGACA 124912101 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | || | || || ||||||||||||||| || | || ||||||||||| || || Sbjct 124912102 TTCTCAATGGTGTCACTCGGCTCCACTTCGAGAGTGATGGTCTTACCAGTCAGGGTCTTC 124912161 Query 132110 ATGAAAATCTGCAT 132123 | ||| |||||||| Sbjct 124912162 ACGAAGATCTGCAT 124912175 Score = 102 bits (112), Expect = 8e-17 Identities = 139/194 (72%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 |||||||| || ||||||||||| || ||| || |||||| |||||||| || | | Sbjct 124912210 GACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGTCCATCTTCCAGCTGTTTCCCAGCA 124912269 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 |||| | | ||| || || ||||| |||||||| || || || ||| || | Sbjct 124912270 AAGATCAACCTCTGCTGGTCAGGAGGGATGCCTTCCTTGTCTTGGATCTTTGCCTTGACA 124912329 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | || | || || ||||||||||||||| || | || ||||||||||| || || Sbjct 124912330 TTCTCAATGGTGTCACTCGGCTCCACTTCGAGAGTGATGGTCTTACCAGTCAGGGTCTTC 124912389 Query 132110 ATGAAAATCTGCAT 132123 | ||| |||||||| Sbjct 124912390 ACGAAGATCTGCAT 124912403 Score = 98.7 bits (108), Expect = 9e-16 Identities = 138/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 |||||||| || ||||||||||| || ||| || |||||| |||||||| || | | Sbjct 124912438 GACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGTCCATCTTCCAGCTGTTTCCCAGCA 124912497 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 |||| | | ||| || || ||||| |||||||| || || || ||| || | Sbjct 124912498 AAGATCAACCTCTGCTGGTCAGGAGGGATGCCTTCCTTGTCTTGGATCTTTGCCTTGACA 124912557 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | || | || || |||||||||| |||| || | || ||||||||||| || || Sbjct 124912558 TTCTCAATGGTGTCACTCGGCTCCACCTCGAGAGTGATGGTCTTACCAGTCAGGGTCTTC 124912617 Query 132110 ATGAAAATCTGCAT 132123 | ||| |||||||| Sbjct 124912618 ACGAAGATCTGCAT 124912631 Score = 84.2 bits (92), Expect = 2e-11 Identities = 135/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 |||||||| || ||||||||||| || ||| ||| |||||| ||||| || |||| | Sbjct 124912894 GACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTCCAGCTGCTTTCCGGCA 124912953 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 |||| | | ||| || || ||||| |||||||| || || || ||| ||| | Sbjct 124912954 AAGATCAACCTCTGCTGGTCAGGAGGAATGCCTTCCTTGTCTTGGATCTTTGCTTTGACG 124913013 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | || | ||| || | ||||| || || | || | || || ||||| || || || Sbjct 124913014 TTCTCGATAGTGTCACTGGGCTCGACCTCAAGGGTGATGGTCTTGCCAGTGAGTGTCTTC 124913073 Query 132110 ATGAAAATCTGCAT 132123 | ||| || ||||| Sbjct 124913074 ACGAAGATTTGCAT 124913087 >seq29 Length=135086622 Score = 95.1 bits (104), Expect = 1e-14 Identities = 81/100 (81%), Gaps = 0/100 (0%) Strand=Plus/Minus Query 147503 TGTACTGCACGATTTCGGCGCACAGGTTGCTGCATTTTATGACTCCCAAATTTTGCTGAT 147562 |||||| ||| ||||| | |||||||||||||||||| ||| ||||| || ||||| | Sbjct 4123370 TGTACTCCACTATTTCTGTGCACAGGTTGCTGCATTTGATGGTTCCCAGGTTCTGCTGGT 4123311 Query 147563 TGCTTTTCCGATTGCACGCGTCTTTGAAGAGCATGTACGG 147602 |||| || ||||| || | |||||| ||||||| ||||| Sbjct 4123310 TGCTCTTTCGATTACAGGAATCTTTGTAGAGCATATACGG 4123271 >seq46 Length=83257441 Score = 86.0 bits (94), Expect = 6e-12 Identities = 148/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 131909 CGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAA 131968 |||| |||| || | | | ||||| || || ||||||||||| | || || | Sbjct 16382350 CGCAGGACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCA 16382291 Query 131969 TCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTA 132028 ||||| ||||| || || | | |||| || | ||| || || ||||| |||||||||||| Sbjct 16382290 TCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCGGGAGGGATGCCTTCTTTA 16382231 Query 132029 TCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGC 132088 || || || |||| | ||| | || || | ||||||||||| | || | Sbjct 16382230 TCCTGGATCTTGGCCTTCACATTTTCGATGGTGTCACTGGGCTCCACTTCCAGGGTGATG 16382171 Query 132089 GTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 || || || ||||| || || | ||| |||||||| Sbjct 16382170 GTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 16382136 Score = 86.0 bits (94), Expect = 6e-12 Identities = 148/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 131909 CGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAA 131968 |||| |||| ||| | | | |||||||| || ||||||||||| | | || | Sbjct 22204535 CGCAGGACCAGATGCAGGGTCGACTCTTTCTGGATGTTGTAGTCAGAAAGACTGCGGCCA 22204476 Query 131969 TCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTA 132028 ||||| ||||| || || | | |||| || | ||| || || || || |||||||||||| Sbjct 22204475 TCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCGGGGGGGATGCCTTCTTTA 22204416 Query 132029 TCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGC 132088 || || || |||| | ||| | || || | ||||||||||| | || | Sbjct 22204415 TCTTGGATCTTGGCCTTCACATTTTCGATGGTGTCACTGGGCTCCACTTCCAGGGTGATG 22204356 Query 132089 GTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 || || || ||||| || || | ||| |||||||| Sbjct 22204355 GTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 22204321 Score = 84.2 bits (92), Expect = 2e-11 Identities = 150/219 (68%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 131905 CAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACG 131964 || ||||| |||| || | | | |||||||| || ||||||||||| | || || Sbjct 16382582 CAGGCGCAGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCG 16382523 Query 131965 CGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTC 132024 |||||| ||||| || || | | |||| || | ||| || || || || |||||||| Sbjct 16382522 GCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCGGGGGGGATGCCTTC 16382463 Query 132025 TTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGT 132084 |||||| || || |||| | ||| | || || | |||||||| || | || Sbjct 16382462 TTTATCTTGGATCTTGGCCTTCACATTTTCGATGGTGTCACTGGGCTCCACCTCCAGAGT 16382403 Query 132085 CAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 | || || || ||||| || || | ||| |||||||| Sbjct 16382402 GATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 16382364 Score = 82.4 bits (90), Expect = 7e-11 Identities = 148/215 (69%), Gaps = 1/215 (0%) Strand=Plus/Minus Query 131909 CGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAA 131968 |||| |||| || | | | ||||| || || ||||||||||| | |||| | Sbjct 22204762 CGCAGGACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCAGAAAGAGTACCGCCA 22204703 Query 131969 TCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTA 132028 ||||| ||||| || || | | |||| || | ||| ||||| || || |||||||||||| Sbjct 22204702 TCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGATCGGGGGG-ATGCCTTCTTTA 22204644 Query 132029 TCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGC 132088 || || || |||| | ||| | || || | ||||||||||| | || | Sbjct 22204643 TCTTGGATCTTGGCCTTCACATTTTCGATGGTGTCACTGGGCTCCACTTCCAGGGTGATG 22204584 Query 132089 GTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 || || || ||||| || || | ||| |||||||| Sbjct 22204583 GTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 22204549 >seq44 Length=90338345 Score = 84.2 bits (92), Expect = 2e-11 Identities = 135/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 ||||| |||||||| |||||||| || ||||| |||||| ||||| || || | | Sbjct 61055721 GACTCCTTTTGAATATTGTAGTCAGACAAAGTACGTCCATCTTCCAGCTGCTTGCCAGCA 61055780 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 |||| || | ||| ||||| ||||| || ||||| ||| | || || || | Sbjct 61055781 AAGATCAGTCTCTGCTGATCAGGAGGAATTCCTTCCTTACCCTGGATCTTGGCCTTTACA 61055840 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | ||| | ||||| | || || || |||| || | || || || || || ||||| Sbjct 61055841 TTTTCTATCGTATCCGAGGGTTCAACCTCGAGGGTGATGGTCTTCCCCGTAAGGGTTTTC 61055900 Query 132110 ATGAAAATCTGCAT 132123 | |||||||||||| Sbjct 61055901 ACGAAAATCTGCAT 61055914 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476607756484080