Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Homo_20sapiens_20[refseq_20GCF_5F000001405.37_202017-06-14] 578 sequences; 3,253,848,404 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq64 361 8e-95 seq1 136 5e-27 seq11 132 7e-26 seq22 116 5e-21 seq29 109 8e-19 seq51 84.2 3e-11 >seq64 Length=156040895 Score = 361 bits (400), Expect = 8e-95 Identities = 642/934 (69%), Gaps = 12/934 (1%) Strand=Plus/Plus Query 39270 TTTAAAAGTCAACATCTAAAGAAAAATGATTATCTTCTTG---TGACATAACTCCCATTT 39326 |||| |||||| ||| ||| | |||| ||| |||| | | ||||| |||||||| Sbjct 44309313 TTTAGAAGTCAGCATTTAAGGTAAAAGAATTCTCTTTTGGACTTGACACCACTCCCATCC 44309372 Query 39327 TTTGGTATTCACCAACGCGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTTT 39386 | || || || || || | |||| || || ||||| ||| || ||| ||||| | Sbjct 44309373 TCTGATACTCGCCTACTCTCCTCTCAAAGAAGTTAGT-----CTTTCAGTGAAATATTCT 44309427 Query 39387 CCATGAAATCAAACGGATTAGTTGCATTATAtttttttttAAATCCTAATTCTGAAATCA 39446 || | || ||||| || | | | | || |||| || | ||| || | Sbjct 44309428 CCGTAAAGTCAAATGGGCTCTCTACTCCGAAAACCTTGCTAAAACCCAGTTCCAGCATAA 44309487 Query 39447 ATCTATCTGCAACAAATTCTATGTATGTTTTCATCATTTCACAATTCATTCCTATGAGTT 39506 ||| ||||| ||||| || |||||| ||||| | |||||||| || ||||| | Sbjct 44309488 GTCTGTCTGCCACAAACTCAATGTATTGCTTCATTAGAGTGCAATTCATCCCAATGAGCT 44309547 Query 39507 TAACTGGTAGAGCCTCCGTTAGAAACTCTTTTTCGATGTCTACGGCCTCTGTTATTATCG 39566 | || || | ||||| || || || |||| ||| || | || || | | ||||| Sbjct 44309548 TCACAGGCAAGGCCTCGGTGAGGAATTCTTGTTCTATCTGAACAGCATTGATAATTATTT 44309607 Query 39567 ATGTTACTACCTCATCACTCGGTGGATGCAATAAATGTTTAAACATTAAGCAGGCGAAGT 39626 | | ||| ||| || ||| || | | ||||| ||||| ||||| || || | Sbjct 44309608 CTCTCACTTTCTCCTCCGATGGTTTGTGTACCAGGTGTTTGAACATCAAGCAAGCAAAAT 44309667 Query 39627 CACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTA 39686 |||| |||| ||||| ||||| ||||| | ||| || ||||| ||||| |||||||| Sbjct 44309668 CACAGTGTAAACCCTCTTCTCTGCTAATAAGTTCATTGGAAAACGTGAGGCCAGGCATCG 44309727 Query 39687 GACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTA 39746 | || || || |||||||| ||||| | |||||||| |||||||||||||||||||||| Sbjct 44309728 GTCCTCGTTTCTTGAGCCAGAATATCGATGCAAAAGAACCAGAAAAGAAGATGCCTTCTA 44309787 Query 39747 CTGCTGCAAATGCAACAAGTCTCTCTCCGTAACTTGTATCATTAT---GTATCCACTTCT 39803 |||| ||||| || |||| | || || || | | || || | ||||| | Sbjct 44309788 CTGCAGCAAAGGCTACAACACGTTCACCATAGGTAGCCTCTTTGTCCCCAATCCAGCGCA 44309847 Query 39804 GTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGATAAT 39863 |||||||| || |||||||| ||||||||||| | ||| || ||||| |||||| | | Sbjct 44309848 AGGCCCAATCTGCCTTCTTCTTGACACAAGGCATCG-TTCAATGGCATTGAAGAGAAATT 44309906 Query 39864 GTTTTTCATCACTATCTTTAACATATGTATCTATTAACAGACTATACATTTCTGAATGGA 39923 |||| | |||||| | || || || || | |||||||||||||| ||||| | Sbjct 44309907 CCCTTTCTTTGGGATCTTTGATGTAAGTGTCAATAAGGAGACTATACATTTCAGAATGTA 44309966 Query 39924 TGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATTTGTACCTCTG 39983 ||||||| || || || || || || || ||||| | ||||| ||||| || || | Sbjct 44309967 TGTTTTCCATGGCAATTTGGAAGCCATAGAAACAGCGGGCTTCTGTAATCTGAACTATTT 44310026 Query 39984 AACAAAATCTTTCCGCCAAATTTTCATTCACTATTCCATCACTAGCGGCAAAAAATGCCA 40043 | ||||| ||| ||||||||||||| | ||| |||||||| || ||||| || ||| Sbjct 44310027 GGCTAAATCGCTCCACCAAATTTTCATTTATTATGCCATCACTTGCTGCAAAGAAAACCA 44310086 Query 40044 ATACATGTTTAATAAAATATTTTTCATCGGGTGTCAATTTATTCCAGTCATTGATATCTT 40103 ||||| ||||||||| | || ||||| ||| | ||||| || || | Sbjct 44310087 GAACATGGGATATAAAATATCTCTCCTCGGGCTTCAGGGATTCCCAGTGCCGAATGTCCT 44310146 Query 40104 TTGATATATCTACTTCTTCAGCTGTCCAAAACGACGCCTCTGCCTTTTTGTACATGTTCC 40163 | || | || || || || | ||||| || || ||||| ||||| | ||||| | || Sbjct 44310147 TGGACAGGTCCACCTCCTCGGTGGTCCAGAAGGAAGCCTCCGCCTTCTCATACATCTGCC 44310206 Query 40164 ATATATCACGATATTGTATTGGAAAAATAACAAA 40197 | |||||| | || | || || || || ||||| Sbjct 44310207 AGATATCATGGTACTCGATGGGGAAGATGACAAA 44310240 Score = 226 bits (250), Expect = 4e-54 Identities = 395/568 (70%), Gaps = 14/568 (2%) Strand=Plus/Minus Query 39616 GCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAG 39675 ||| || |||| ||| |||| |||||||| || ||||| | ||| || ||||||||||| Sbjct 144309693 GCAAGCAAAGTAACAGTGTAAACCCTCATCACTGCTAATAAGTTCATTGGAAAATGTGAG 144309634 Query 39676 TCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAA 39735 |||||||| || || | || |||||||| ||||| |||||||| ||||||||||| Sbjct 144309633 GCCAGGCATCAGTCCTTGTTTCTTGAGCCAGAATATCAATGCAAAAGAACCAGAAAAGAA 144309574 Query 39736 GATGCCTTCTACTGCTGCAA-------ATGCAACAAG-TCTCTCTCCGTAACTTGTATCA 39787 | ||| ||| || |||| |||||||| | |||| | ||||| | | | Sbjct 144309573 GGTGCTTTCCACCAGGGCAAAGGCTGCATGCAACACGTTCTCCATGGGTAACGTCT-TTG 144309515 Query 39788 TTATGTATCCACTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTATA 39847 || ||||| | ||||| | || |||||||| |||| |||||| ||||| || Sbjct 144309514 TTCCCAATCCAACACAAGACCCAACCTGCCTTCTTCTTGACAC-AGGCATCGTTTCAATG 144309456 Query 39848 GCATTAAAGAGATAATGTTTTTCATCACTATCTTTAACATATGTATCTATTAACAGACTA 39907 ||| | |||||| | | |||| | |||||||| |||||| || || | ||| || Sbjct 144309455 GCACTGAAGAGAAATTCCCTTTCTTTGTTATCTTTA--ATATGTGTCAATAAGGAGATTA 144309398 Query 39908 TACATTTCTGAATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGCTTCA 39967 | ||||| ||||| |||||||| || || || || || || || || || | ||| Sbjct 144309397 TTTATTTCAGAATGTATGTTTTCTATAGCAATTTGGAAGCCATAGAAGCAGAAGGTTTCT 144309338 Query 39968 GTAATTTGTACCTC-TGAACAAAATCTTTCCGCCAAATTTTCATTCACTATTCCATCACT 40026 ||||| || || || ||||| |||| |||| |||| ||||||| | ||| ||||||| Sbjct 144309337 GTAATCTGAACTTCTTGAAC-AAATTGTTCCACCAAGTTTTCATCTATTATCCCATCACA 144309279 Query 40027 AGCGGCAAAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGGTGTCAATTTATT 40086 || ||||| || |||| | ||| ||||||||| ||| || || ||| | Sbjct 144309278 TGCTGCAAAGAAAGCCAGAATATGGGATATAAAATATCTTTACTCAGGCTTCAGGGCTTC 144309219 Query 40087 CCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAACGACGCCTCTGC 40146 ||||| || || || || | || || || | || |||| || || ||||| | Sbjct 144309218 CCAGTGCCAAATGTCCTTGGACAGGTCCACCTCCTGGGCCATCCAGAAAGAAACCTCTAC 144309159 Query 40147 CTTTTTGTACATGTTCCATATATCACGA 40174 || || ||||| ||||| |||||| || Sbjct 144309158 TTTCTTTTACATTTTCCAAATATCATGA 144309131 >seq1 Length=248956422 Score = 136 bits (150), Expect = 5e-27 Identities = 233/336 (69%), Gaps = 9/336 (3%) Strand=Plus/Plus Query 39729 AAAAGAAGATGCCTTCTACTGCTGCAAATGCAACAAGTCTCTCTCCGTAACTTGTATCAT 39788 |||||||||| |||| ||||| ||||| || |||| | || || || | | || | Sbjct 161378705 AAAAGAAGATATCTTCCACTGCAGCAAAGGCTACAACACATTCACCATAGGTAGCCTCTT 161378764 Query 39789 TATGT---ATCCACTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTA 39845 | | || || || ||||||| || |||||| |||||||| |||||| | Sbjct 161378765 TGTCCCCAATACAACTCAAGGCCCAATTTGC---CTTCTTGACACAAGG---TGTTTCAA 161378818 Query 39846 TAGCATTAAAGAGATAATGTTTTTCATCACTATCTTTAACATATGTATCTATTAACAGAC 39905 | | || |||||| | | |||| | |||||| | || || || || | |||| Sbjct 161378819 TGGTGTTGAAGAGAAATTCCCTTTCTTTGGCATCTTTTATGTAAGTGTCAATAAGGAGAC 161378878 Query 39906 TATACATTTCTGAATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGCTT 39965 |||||||||| ||||| ||||||| || || || || || | || ||||| | |||| Sbjct 161378879 TATACATTTCAGAATGTGTGTTTTCCATGGCAATTTGGAAGTCATAGAAACAGCGGGCTT 161378938 Query 39966 CAGTAATTTGTACCTCTGAACAAAATCTTTCCGCCAAATTTTCATTCACTATTCCATCAC 40025 | ||||| || || ||| | ||||| ||| |||| |||||||| ||||| ||||||| Sbjct 161378939 CTGTAATCTGAACTTCTTGGCTAAATCGCTCCACCAAGTTTTCATTTACTATGCCATCAC 161378998 Query 40026 TAGCGGCAAAAAATGCCAATACATGTTTAATAAAAT 40061 | || ||||| || |||| ||| | ||||||| Sbjct 161378999 TTGCTGCAAAGAAAGCCAGAACACGGGATATAAAAT 161379034 >seq11 Length=242193529 Score = 132 bits (146), Expect = 7e-26 Identities = 105/126 (83%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 39639 CCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTT 39698 |||||||||| ||||| | ||| |||||||||||||| |||||||| || || || || | Sbjct 10127221 CCTCATCTCTGCTAATAAGTTCATTAGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTCT 10127162 Query 39699 TGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATG 39758 ||||||| ||||| | |||||||| || |||||||| |||||||| ||||| ||||| | Sbjct 10127161 TGAGCCAGAATATCGACGCAAAAGAACCGGAAAAGAAAATGCCTTCCACTGCAGCAAAGG 10127102 Query 39759 CAACAA 39764 | |||| Sbjct 10127101 CTACAA 10127096 >seq22 Length=145138636 Score = 116 bits (128), Expect = 5e-21 Identities = 106/134 (79%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 39641 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTTTG 39700 |||||||| || || | ||| || ||||| |||||||| ||||| ||||| | ||| || Sbjct 102218815 TCATCTCTGCTGATGAGTTCATTGGAAAAAGTGAGTCCTGGCATAAGACCTCTCTTCTTT 102218874 Query 39701 AGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATGCA 39760 ||||| ||||| |||||||||||||| || ||||| | |||||||| || ||||| || Sbjct 102218875 AGCCAGAATATAGCAGCAAAAGATCCTGAGAAGAAAACTCCTTCTACAGCAGCAAAGGCC 102218934 Query 39761 ACAAGTCTCTCTCC 39774 || | ||| || || Sbjct 102218935 ACCACTCTTTCCCC 102218948 >seq29 Length=135086622 Score = 109 bits (120), Expect = 8e-19 Identities = 125/168 (74%), Gaps = 0/168 (0%) Strand=Plus/Minus Query 70334 CACTAAATAGtttttttGTTTCCTTGTGTAAATTTGATATGGCTATTCTGGCTGCTAGAA 70393 |||| || | ||| |||||||| ||||| || || || | || || |||||||| || | Sbjct 4106223 CACTGAACACTTTCTTTGTTTCTTTGTGCAAGTTAGAGACAGCGATCCTGGCTGCCAGGA 4106164 Query 70394 TAGCATAGTCAGGATGTTGTGTAGTACAAGTAGCTGCTATTTCCGCAGCTAACGTATCTA 70453 ||||||||||||| || | ||||| | || || ||| |||| ||||| || ||||||| Sbjct 4106163 TAGCATAGTCAGGGTGCTTAGTAGTCAAGGTTGCAGCTGTTTCAGCAGCCAAAGTATCTA 4106104 Query 70454 ATTCTATAGTTGTAACTCCGTTATATAGCCCTTGAATAACTTTCATGG 70501 ||| | || || || || | || | ||||| || |||||||||| Sbjct 4106103 GTTCCACTGTGGTGACCCCACTGTACAAGCCTTGGATTACTTTCATGG 4106056 Score = 89.7 bits (98), Expect = 7e-13 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 69595 ACTCGTTTCATAAATAGATCGGGAATCCAAAGAGCTATAAAGAGATCTCTGGTTCTATTT 69654 ||||||||||| || ||||| |||||||||||||| | || |||||||||| | | Sbjct 4121752 ACTCGTTTCATGAAGAGATCCGGAATCCAAAGAGCAAAGAAAAGATCTCTGGCACGCTGC 4121693 Query 69655 TCTTCATTTCCTGTAttttttttAAGATCGAGAAACTCCATAATATCAGAATGCCATGGT 69714 ||||| |||||||| || || || | ||| || || || | || || ||||||| || Sbjct 4121692 TCTTCCTTTCCTGTGTTCTTCTTTAAATCAAGGAATTCAAAGATGTCTAAATGCCAAGGC 4121633 Query 69715 TCTAGATATATCGC 69728 || || || || || Sbjct 4121632 TCCAGGTAAATAGC 4121619 >seq51 Length=58617616 Score = 84.2 bits (92), Expect = 3e-11 Identities = 181/266 (68%), Gaps = 6/266 (2%) Strand=Plus/Minus Query 37338 TTATTTCAGTCCTGTTGATCCAAACCCTTGAGCTCCTCTATCTGTACCATCTAGAGATTG 37397 ||| ||| ||| || || ||||| ||| | ||| || | || |||| | || ||| Sbjct 52451943 TTAATTCTTTCCGGTAGAGCCAAAACCTCCTGATCCCCTTTTGGTGTCATCCAAAGCTTG 52451884 Query 37398 TACTTCATTCAGATCAGGAT-AATATATACGTTGATAGATTAGCTGAGCTATTCTATCGC 37456 ||||| | | || |||| || | || |||| | | || ||||| || |||| ||| | Sbjct 52451883 AACTTCTTCTATTTCTGGATTAAAAAATCCGTTCACAAATGAGCTGTGCAATTCGATCAC 52451824 Query 37457 CCGTATTT-ATTTTAAAATTACATTTTCCATTATTTATCAGAATGACTCCAATATTCCCC 37515 | | ||| | || ||| || ||| | | ||| | || | || |||| ||| || Sbjct 52451823 CTTTTTTTGACTTCAAACTTTTCTTTGCAAAAATTAAAGAGTACAACACCAACATTTCCT 52451764 Query 37516 CTATAATCTTCATCGATTACTCCGCCTCCTACATCAATA---CCTTTTAGAGACAAACCC 37572 |||||||||||||| | | || |||||||||||| | |||| || ||| || Sbjct 52451763 CTATAATCTTCATCTGTGATACCAGCTCCTACATCAACAAAGTGTTTTGCAGCCAAGCCA 52451704 Query 37573 GATCTAGGAGCTATTCTTCCATAACA 37598 || || ||||||| || ||||||||| Sbjct 52451703 GACCTTGGAGCTACTC-TCCATAACA 52451679 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686903837083920