Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Homo_20sapiens_20[refseq_20GCF_5F000001405.37_202017-06-14] 578 sequences; 3,253,848,404 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq46 118 9e-22 seq14 93.3 4e-14 seq23 91.5 1e-13 >seq46 Length=83257441 Score = 118 bits (130), Expect = 9e-22 Identities = 165/230 (72%), Gaps = 1/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || || |||||||||||| | || || || |||||||| || Sbjct 22204549 ATGCAGATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTGGAAGTGGAGCCCAGT 22204608 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || || | || || || || ||||| ||||||||||| || |||||||| Sbjct 22204609 GACACCATCGAAAATGTGAAGGCCAAGATCCAAGATAAAGAAGGCAT-CCCCCCGATCAG 22204667 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | | || | || ||||| || ||||||| | || |||| || |||||| Sbjct 22204668 CAGAGGCTCATCTTTGCAGGCAAGCAGCTGGAAGATGGCGGTACTCTTTCTGACTACAAC 22204727 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || |||||||||||| | || |||| ||||| || | ||||| || Sbjct 22204728 ATCCAGAAGGAGTCGACCCTGCACCTGGTCCTGCGTCTGAGAGGTGGTAT 22204777 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || || |||||||||||| | || ||||| || ||||| || Sbjct 16382364 ATGCAGATCTTCGTGAAGACCCTGACCGGCAAGACCATCACTCTGGAGGTGGAGCCCAGT 16382423 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || || | || || || || ||||| ||||||||||| || ||||| || Sbjct 16382424 GACACCATCGAAAATGTGAAGGCCAAGATCCAAGATAAAGAAGGCATCCCCCCCGACCAG 16382483 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | | || | || ||||| || ||||||| | || |||| || |||||| Sbjct 16382484 CAGAGGCTCATCTTTGCAGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGACTACAAC 16382543 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGC 27215 || || || ||||||||| | || |||| |||| || |||||||| Sbjct 16382544 ATCCAGAAAGAGTCGACCCTGCACCTGGTCCTGCGCCTGAGGGGTGGC 16382591 Score = 113 bits (124), Expect = 4e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || || |||||||||||| | || || || |||||||| || Sbjct 16382136 ATGCAGATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTGGAAGTGGAGCCCAGT 16382195 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || || | || || || || || || ||||||||||| || ||||| || Sbjct 16382196 GACACCATCGAAAATGTGAAGGCCAAGATCCAGGATAAAGAAGGCATCCCTCCCGACCAG 16382255 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | | || | || ||||| || ||||||| | || |||| || |||||| Sbjct 16382256 CAGAGGCTCATCTTTGCAGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGACTACAAC 16382315 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || |||||||||||| | || |||| ||||| || | ||||| || Sbjct 16382316 ATCCAGAAGGAGTCGACCCTGCACCTGGTCCTGCGTCTGAGAGGTGGTAT 16382365 Score = 113 bits (124), Expect = 4e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || || |||||||||||| | || || || |||||||| || Sbjct 22204321 ATGCAGATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTGGAAGTGGAGCCCAGT 22204380 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || || | || || || || ||||| ||||||||||| || ||||| || Sbjct 22204381 GACACCATCGAAAATGTGAAGGCCAAGATCCAAGATAAAGAAGGCATCCCCCCCGACCAG 22204440 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | | || | || ||||| || ||||||| | | |||| || |||||| Sbjct 22204441 CAGAGGCTCATCTTTGCAGGCAAGCAGCTGGAAGATGGCCGCAGTCTTTCTGACTACAAC 22204500 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || || ||||||||| | ||| |||| ||||| || | ||||| || Sbjct 22204501 ATCCAGAAAGAGTCGACCCTGCATCTGGTCCTGCGTCTGAGAGGTGGTAT 22204550 Score = 109 bits (120), Expect = 5e-19 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || ||||| || ||||||||| | || || ||||| ||||| || Sbjct 16381908 ATGCAGATCTTCGTGAAAACCCTTACCGGCAAGACCATCACCCTTGAGGTGGAGCCCAGT 16381967 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || || | || || || || || || || |||||||| || ||||| || Sbjct 16381968 GACACCATCGAAAATGTGAAGGCCAAGATCCAGGATAAGGAAGGCATTCCCCCCGACCAG 16382027 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | | || | || ||||| || ||||||| | || |||| || |||||| Sbjct 16382028 CAGAGGCTCATCTTTGCAGGCAAGCAGCTGGAAGATGGCCGTACTCTTTCTGACTACAAC 16382087 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || |||||||||||| | || |||| ||||| || | ||||| || Sbjct 16382088 ATCCAGAAGGAGTCGACCCTGCACCTGGTCCTGCGTCTGAGAGGTGGTAT 16382137 Score = 93.3 bits (102), Expect = 4e-14 Identities = 161/232 (69%), Gaps = 4/232 (2%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACC--GT 27045 |||| ||| || || ||||| || ||||||||| || || ||||||||||| || || Sbjct 22204093 ATGCGGATCTTCGTGAAAACCCTTACCGGCAAGATCATCACCCTTGAAGTGGAGCCCAGT 22204152 Query 27046 CCGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATC 27105 | ||| || || | |||||| ||||| ||||| |||||||||| || || | Sbjct 22204153 GCCACT--ATCGAAAATGTCAAAGCCAAAATCCAAGATAAAGAAGGCAATCCCTGTGACC 22204210 Query 27106 AACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACA 27165 | ||| | | || | || ||||| || |||||| | | |||| || |||| Sbjct 22204211 AGCAGAGGCTCATCTTTGCAGGCAAGCAGCGGGAAGATGGCCGCAGTCTTTCTGACTACA 22204270 Query 27166 ACATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 |||| || || ||||||||| | ||| |||| ||||| | | ||||| || Sbjct 22204271 ACATCCAGAAAGAGTCGACCCTGCATCTGGTCCTGCGTCGGAGAGGTGGTAT 22204322 >seq14 Length=198295559 Score = 93.3 bits (102), Expect = 4e-14 Identities = 158/228 (69%), Gaps = 1/228 (0%) Strand=Plus/Plus Query 26990 GCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCCGA 27049 |||||| ||||| || || || || |||||| | || |||||||| || | || || Sbjct 27486249 GCAGATCTTTGTGAAGACCCTCACGGGCAAGACCATCACTCTTGACGTCAAGCCAAGTGA 27486308 Query 27050 CTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAACA 27109 | | ||||||| |||||| |||||||||||| ||| ||| || ||||| || || || Sbjct 27486309 CACCATTGAGAATGTCAAAGCCAAAATTCAAGAC-AAGGAGGTATCCCACCTGACCAGCA 27486367 Query 27110 GCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAACAT 27169 || | | ||| || |||||||| |||| || | || | || || | |||||| Sbjct 27486368 GCATCTGATACTTGCTGGCAAACAGCTGGAGGATGGCCGAACTCTCTCAGACTGCAACAT 27486427 Query 27170 TCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || ||||| ||| | || |||| |||| || |||||||| Sbjct 27486428 CTGGAAAGAGTCCACCCTGCACCTGGTGCTGCGCCTGTAAGGTGGCAT 27486475 >seq23 Length=138394717 Score = 91.5 bits (100), Expect = 1e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| || || || || |||||| | || || ||||| || || || Sbjct 22012155 ATGCAGATCTTTGTGAAGACCCTCACGGGCAAGACCATCACCCTTGAGGTCGAGCCCAGT 22012214 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||||| |||| |||||||||||||| || || || || || || | Sbjct 22012215 GACACCATTGAGAATGTCAGTGCGAAAATTCAAGACAAGGAGGGTATCCCCCCTGACAAG 22012274 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||| | |||| ||| ||||||| |||| || | || | || || |||||| Sbjct 22012275 CAGCGTCTGATATTTGCCAGCAAACAGCTGGAGGATGGCCGCACTCTCTCAGACTACAAC 22012334 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 | || || || | ||| || |||| ||| |||| |||||||| Sbjct 22012335 GTCCAGAAACAGCCCACCCCGCACCTGGTGCTGCACCTGCGAGGTGGCAT 22012384 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434915257714560