Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Homo_20sapiens_20[refseq_20GCF_5F000001405.37_202017-06-14] 578 sequences; 3,253,848,404 total letters Query= NC_029255.1 Length=129563 Score E Sequences producing significant alignments: (Bits) Value seq50 205 8e-48 seq14 197 1e-45 seq11 154 1e-32 >seq50 Length=80373285 Score = 205 bits (226), Expect = 8e-48 Identities = 375/547 (69%), Gaps = 7/547 (1%) Strand=Plus/Minus Query 2140 CTAAACTGTATTGCAGCTGTCTCTGAAAATATGGGCATTGGAAACAAGGGAAAACTGCCA 2199 |||||||| || | ||||| || | || |||||||| || || || || | ||||| Sbjct 26171274 CTAAACTGCATCGTCGCTGTGTCCCAGAACATGGGCATCGGCAAGAACGGGGACCTGCCC 26171215 Query 2200 TGGCCTCCTCTTAAAAATGAATTTAAACATTTTCAAAAAATGAC---ATCTTCTTCCACT 2256 ||||| || || | |||||||| | | |||| || | |||||| | | ||||| Sbjct 26171214 TGGCCACCGCTCAGGAATGAATTCAGATATTTCCAGAGAATGACCACAACCTCTTCAGTA 26171155 Query 2257 GACTTAAAACAGAATGTTGTAATTATGGGAAGAAAGACATGGTTTTCACTTCCCATTAAA 2316 || ||||||||| | || |||||||| | ||||| ||||| || |||| | | | Sbjct 26171154 GAAGGTAAACAGAATCTGGTGATTATGGGTAAGAAGACCTGGTTCTCCATTCC--TGAGA 26171097 Query 2317 AGCA--GGCCTTTGAACAACAGAATAAATCTGGTTCTCAGTAGACACCTTAAAGAGCCAC 2374 || | | ||||| || ||||| ||| | |||||||| ||| | || || || || | Sbjct 26171096 AGAATCGACCTTTAAAGGGTAGAATTAATTTAGTTCTCAGCAGAGAACTCAAGGAACCTC 26171037 Query 2375 CACGTGGGGCTCACTTTGTTGCAAAAAGTATAGATCACGCTCTGGAAATTATAATAGGAC 2434 ||| || ||||| ||| || | | |||| ||||| | || | || ||| | || Sbjct 26171036 CACAAGGAGCTCATTTTCTTTCCAGAAGTCTAGATGATGCCTTAAAACTTACTGAACAAC 26170977 Query 2435 CAGAATTAAAAGACAGGGTGGATAAGATTTGGATAATTGGTGGAAGATCTGTCTATGAGG 2494 |||||||| | | | || || | | | |||||| ||||||| || ||||| ||| ||| Sbjct 26170976 CAGAATTAGCAAATAAAGTAGACATGGTCTGGATAGTTGGTGGCAGTTCTGTTTATAAGG 26170917 Query 2495 AGAGCATTACAAGATCTTGCAAACAGATGCTGTTTTTAACAAGGATTCTGCAAAAATTTG 2554 | ||| | | || | | | || ||| | |||||||| ||||| | |||| Sbjct 26170916 AAGCCATGAATCACCCAGGCCATCTTAAACTATTTGTGACAAGGATCATGCAAGACTTTG 26170857 Query 2555 AATGTGATACATACTTCCCAGAAATTAATCTTACCAAATACAAACAACTTACTGAATTTC 2614 || |||| || | || ||||||||| || | ||||| |||| || | |||| | Sbjct 26170856 AAAGTGACACGTTTTTTCCAGAAATTGATTTGGAGAAATATAAACTTCTGCCAGAATACC 26170797 Query 2615 CAGGTGTTCCCTCTGCCGTGCAAGAAGAAAATGGAATTAGATACAAATTTGAGATATATG 2674 ||||||||| ||||| || || || || || || |||| ||||||||||| |||||| Sbjct 26170796 CAGGTGTTCTCTCTGATGTCCAGGAGGAGAAAGGCATTAAGTACAAATTTGAAGTATATG 26170737 Query 2675 aaaaaaa 2681 | || || Sbjct 26170736 AGAAGAA 26170730 Score = 118 bits (130), Expect = 9e-22 Identities = 110/140 (79%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 3245 GTTGTTGATGAGCTCTTCCGAGATGGGGTAAACTGGGGGCGCATTGTTGCTTTCTTTGAG 3304 || || || ||||||||| | || ||||| ||||||||| | ||||| || ||||||||| Sbjct 63318270 GTGGTGGAGGAGCTCTTCAGGGACGGGGTGAACTGGGGGAGGATTGTGGCCTTCTTTGAG 63318211 Query 3305 TTTGGTGGTGTTATGTGTGTGGAAAGCGTCAATAGAGGCATACCCTCCCTCGTTGACAAC 3364 || ||||| || ||||||||||| |||||||| | | || | |||| || |||||| Sbjct 63318210 TTCGGTGGGGTCATGTGTGTGGAGAGCGTCAACCGGGAGATGTCGCCCCTGGTGGACAAC 63318151 Query 3365 ATTGCCGCGTGGATGACAGA 3384 || ||| ||||||||| || Sbjct 63318150 ATCGCCCTGTGGATGACTGA 63318131 Score = 105 bits (116), Expect = 6e-18 Identities = 120/161 (75%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 118534 AGCCCTGTCAGGTGAGCAATCATGTATGTCAACAAACTGTAGCTGGCTACATTAAAAGGA 118593 || || || | ||| ||||||||||| || | || ||||||||| | || ||||| Sbjct 670863 AGGCCCGTGATGTGCGCAATCATGTACGTGAGCAGGGCGTAGCTGGCGATGTTGAAAGGC 670804 Query 118594 ACACCCAGACCCATGTCTGCTGATCTCTGGTACAATTGGCAAGAGAGCTCCCCGTTTGCA 118653 ||||| || ||||||||| | ||||||||||||| ||||| || ||||| | ||| | Sbjct 670803 ACACCGAGGCCCATGTCTCCCGATCTCTGGTACAGCTGGCAGGACAGCTCACTGTTCACC 670744 Query 118654 ACATAAAACTGACTTATGATGTGACATGGAGGCAGAACCAT 118694 ||||| ||||| | | | || ||||||||||| |||| Sbjct 670743 ACATAGAACTGGCAGAGGGCATGGCATGGAGGCAGCGCCAT 670703 >seq14 Length=198295559 Score = 197 bits (218), Expect = 1e-45 Identities = 374/545 (69%), Gaps = 9/545 (2%) Strand=Plus/Minus Query 2140 CTAAACTGTATTGCAGCTGTCTCTGAAAATATGGGCATTGGAAACAAGGGAAAACTGCCA 2199 |||||||| || | ||||| || |||| |||||||| || || || || | ||||| Sbjct 94061499 CTAAACTGCATCGTCGCTGTGTCCCAAAACATGGGCATCGGCAAGAACGGGGACCTGCCC 94061440 Query 2200 TGGCCTCCTCTTAAAAATGAATTTAAACATTTTCAAAAAATGAC---ATCTTCTTCCACT 2256 |||| || || | |||||||| | |||| || | |||||| | ||||||| Sbjct 94061439 AGGCCGCCGCTCAGGAATGAATTCAGGTATTTCCAGAGAATGACCACAACTTCTTCAGTA 94061380 Query 2257 GACTTAAAACAGAATGTTGTAATTATGGGAAGAAAGACATGGTTTTCACTTCCCATTAAA 2316 || ||||||||| | || |||||||| || ||||| ||||| || |||| | | | Sbjct 94061379 GAGGGTAAACAGAATCTGGTGATTATGGGTAGGAAGACCTGGTTCTCCATTCC--TGAGA 94061322 Query 2317 AGCA--GGCCTTTGAACAACAGAATAAATCTGGTTCTCAGTAGACACCTTAAAGAGCCAC 2374 || | | ||||| || | ||||| ||| | |||||||| ||| | || || || || | Sbjct 94061321 AGAATCGACCTTTAAAGGATAGAATTAATTTAGTTCTCAGCAGAGAACTCAAGGAACCTC 94061262 Query 2375 CACGTGGGGCTCACTTTGTTGCAAAAAGTATAGATCACGCTCTGGAAATTATAATAGGAC 2434 ||| || ||||| ||| |||| | |||| | ||| | || | || ||| | ||| Sbjct 94061261 CACAAGGAGCTCATTTTCTTGCCAGAAGTTTGGATGATGCCTTAAAACTTACTGAACGAC 94061202 Query 2435 CAGAATTAAAAGACAGGGTGGATAAGATTTGGATAATTGGTGGAAGATCTGTCTATGAGG 2494 |||||||| | | | || || | |||||||||| ||||||| || ||||| ||| ||| Sbjct 94061201 CAGAATTAGCAAATAAAGTAGACATGATTTGGATAGTTGGTGGCAGTTCTGTTTATAAGG 94061142 Query 2495 AGAGCATTACAAGATCT-TGCAAACAGATGCTGTTTTTAACAAGGATTCTGCAAAAATTT 2553 | ||| | | | || || | | | || ||| | |||||||| |||| | ||| Sbjct 94061141 A-AGCCATGAATCACCTAGGCCATCTTAAACTATTTGTGACAAGGATCATGCAGGACTTT 94061083 Query 2554 GAATGTGATACATACTTCCCAGAAATTAATCTTACCAAATACAAACAACTTACTGAATTT 2613 ||| |||| || | || |||||||| | | ||||| |||| || |||||| Sbjct 94061082 GAAAGTGACACGTTTTTTTCAGAAATTGACTTGGAGAAATATAAACTTCTGCCTGAATAC 94061023 Query 2614 CCAGGTGTTCCCTCTGCCGTGCAAGAAGAAAATGGAATTAGATACAAATTTGAGATATAT 2673 |||||||||| ||||| || || || | || || | ||||||||||| ||| | Sbjct 94061022 CCAGGTGTTCTCTCTGATGTCCAGGAGGGGAAACACATCAAGTACAAATTTGAAGTATGT 94060963 Query 2674 Gaaaa 2678 || || Sbjct 94060962 GAGAA 94060958 Score = 172 bits (190), Expect = 5e-38 Identities = 183/240 (76%), Gaps = 1/240 (0%) Strand=Plus/Plus Query 1270 aaaCGCCACAAGAAGTTGTCATTGTAACATGGCAAAAAGTTAAAGCATCAAGCCCAGAAA 1329 ||| ||| || |||| ||||||| |||||||| ||| ||||| ||||||||||| Sbjct 112345029 AAATGCC-CAGGAAGCCCTCATTGTGACATGGCAGAAAAAGAAAGCTGTAAGCCCAGAAA 112345087 Query 1330 ACATGGCCACTTTTAGTAATGACCACGGGGTTGTTGTTCAGCCAGCATACAAAGATAAAA 1389 |||||| ||| || || | |||| ||||| || | ||||| || || || || || | Sbjct 112345088 ACATGGTCACCTTCAGCGAGAACCATGGGGTGGTGATCCAGCCTGCCTATAAGGACAAGA 112345147 Query 1390 TGAACATAACTGAGCTTGGACTACAAAACACAACTATAACCTTCTGGAACACAACATTGG 1449 | ||||| || |||| ||||| |||||| |||| || ||||||||||| | || ||| Sbjct 112345148 TAAACATTACCCAGCTGGGACTCCAAAACTCAACCATCACCTTCTGGAATATCACCCTGG 112345207 Query 1450 ATGATGAAGGGTGCTACAAGTGTTTATTTAACACTTTTGGATCTGGGAAGATGTCAGGAA 1509 | ||||||||||| |||| |||| | || || || ||||| | ||||||||| ||||||| Sbjct 112345208 AGGATGAAGGGTGTTACATGTGTCTCTTCAATACCTTTGGTTTTGGGAAGATCTCAGGAA 112345267 >seq11 Length=242193529 Score = 154 bits (170), Expect = 1e-32 Identities = 355/525 (68%), Gaps = 21/525 (4%) Strand=Plus/Plus Query 2167 AATATGGGCATTGGAAACAAGGGAAAACTGCCATGGCCTCCTCTTAAAAATGAATTTAAA 2226 || |||||||| || || || | | ||||| ||||| || || | |||||||| | Sbjct 82856868 AACATGGGCATCGGCAAGAACGAGGACCTGCCCTGGCCACCGCTCAGGAATGAATTCAGG 82856927 Query 2227 CATTTTCAAAAAATGACATCTTCTTCCACTGACTTA---AAACAGAATGTTGTAATTATG 2283 |||| || | | |||| | | ||| | | | ||||||||| | || |||||| Sbjct 82856928 TATTTCCAGAGAGTGACCACAACCTCCTCAGTAGAAGGTAAACAGAATTTGGTGATTATG 82856987 Query 2284 GGAAGAAAGACATGGTTTTCACTTCCCATTAAAAGCA--GGCCTTTGAACAACAGAATAA 2341 || || |||| ||||| || |||| | | ||| | | ||||| || || ||||| | Sbjct 82856988 GGTAGGAAGATCTGGTTCTCCATTCC--TGAGAAGAATCGACCTTTAAAGAATAGAATTA 82857045 Query 2342 ATCTGGTTCTCAGTAGACACCTTAAAGAGCCACCACGTGGGGCTCACTTTGTTGCAAAAA 2401 || | |||||||| || ||| || || || |||| || | ||| ||| |||||| || Sbjct 82857046 ATTTAGTTCTCAGGAGGGACCACAA-GAACCTCCACAAGGAGATCAATTTCTTGCAAGAA 82857104 Query 2402 GTATAGATCACGCTCTGGAAATTATAATAGGACCAGAATTAAAAGACAGGGTGGATAAGA 2461 || | ||| | || || ||| | ||||| |||||||||| | | | || || || Sbjct 82857105 GTCTGGATGATGC-CTTAAAACT-TAATA--ACCAGAATTAGCAAATAAAGTAGACGTGA 82857160 Query 2462 TTTGGATAATTGGTGGAAGATCTGTCT-ATGAGGAGAGCATTACAAGATCTTGCAAACAG 2520 |||||||| ||||||| || ||| | | || |||| ||| | ||| ||| ||| Sbjct 82857161 TTTGGATAGTTGGTGGTAGTTCTATTTTATAAGGAATCCATGA----ATCACTCAAGCAG 82857216 Query 2521 ----ATGCTGTTTTTAACAAGGATTCTGCAAAAATTTGAATGTGATACATACTTCCCAGA 2576 | || ||| | |||||||| | || | |||||| |||| || | || ||||| Sbjct 82857217 TCTTAAACTATTTGTCACAAGGATCATACAGGACTTTGAAAGTGACACGTTTTTTCCAGA 82857276 Query 2577 AATTAATCTTACCAAATACAAACAACTTACTGAATTTCCAGGTGTTCCCTCTGCCGTGCA 2636 |||| || | ||||| ||| || | |||| ||||||||| || || || || Sbjct 82857277 AATTGATTTGGAGAAATATAAATTTCTGCCAGAATACCCAGGTGTTTTCTTTGATGTCCA 82857336 Query 2637 AGAAGAAAATGGAATTAGATACAAATTTGAGATATATGaaaaaaa 2681 || || || || |||| ||||||||||| || |||| || || Sbjct 82857337 GGAGGAGAAAGGCATTAAGTACAAATTTGAAGTACATGAGAAGAA 82857381 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414473880269992