Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Homo_20sapiens_20[refseq_20GCF_5F000001405.37_202017-06-14] 578 sequences; 3,253,848,404 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq31 96.9 3e-15 seq33 86.0 5e-12 seq22 84.2 2e-11 >seq31 Length=133275309 Score = 96.9 bits (106), Expect = 3e-15 Identities = 164/238 (69%), Gaps = 0/238 (0%) Strand=Plus/Plus Query 39049 TTATTCAAGCCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTA 39108 ||| | | ||| |||| | ||| | ||||| || || ||| |||||| || || || Sbjct 115592748 TTAATAATGCCACCTCACAGGCGCAGCACCAGGTGAAGGGTGGACTCTTTCTGGATGTTC 115592807 Query 39109 TAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGG 39168 || || | || | | | || || |||||||||||| ||||||| |||| ||||||| Sbjct 115592808 TAGTCTGAGAGACTGTGGCCATCCTCCAGCTGTTTGCCCACAAATATCAGACACTGCTGG 115592867 Query 39169 TCGGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTC 39228 || | | | || ||| ||||| |||||| ||||| || | | || || || Sbjct 115592868 TCAGGCAGGATGCCCTCCTTGTCTTGGATTTTAGCTTTGACATTCTCAATGGTGTCACTG 115592927 Query 39229 GACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCATCT 39286 | |||||| || | ||||| | || ||||| || || || | |||||| ||||||| Sbjct 115592928 GGCTCCACCTCAAGAGTGATGGTCTTGCCCGTGAGGGTGTTCATAAAGATCTGCATCT 115592985 >seq33 Length=107043718 Score = 86.0 bits (94), Expect = 5e-12 Identities = 159/231 (69%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 39057 GCCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGC 39116 ||| |||| | ||| | ||||| | ||| ||| |||||| || || || || | | Sbjct 58141507 GCCACCTCGCAGGCGCAGCACCAGGTTTAGGGTGGACTCTTTCTGGATGTTGTAGCCTGA 58141448 Query 39117 AAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTC-GGTGG 39175 || || | | || || ||| |||| || |||||||| |||||||||||||| ||||| Sbjct 58141447 GAGAGTGTGGCCATCCTCCAGCCGTTTCCCAGCAAATATCAGACGCTGCTGGTCAGGTGG 58141388 Query 39176 GCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCA 39235 | | | ||| |||||| ||||| ||||| || | || ||| | | || | Sbjct 58141387 G-ATACCCTCCTTGTCCTGAATTTTGGTTTTGACATTCTAAATGGTGTCGGTGGGCTTGA 58141329 Query 39236 CGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCATCT 39286 | || | ||||| | || ||||| || || || |||||||| ||||||| Sbjct 58141328 CCTCAAGGGTGATGGTCTTGCCCGTGAGGGTCTTCACAAAGATCTGCATCT 58141278 >seq22 Length=145138636 Score = 84.2 bits (92), Expect = 2e-11 Identities = 108/145 (74%), Gaps = 3/145 (2%) Strand=Plus/Minus Query 39057 GCCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGC 39116 ||| |||| | ||| | ||||| || || ||| ||| || || || || || || | Sbjct 123237061 GCCACCTCGCAGGCGCAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCTGA 123237002 Query 39117 AAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTC-GGTGG 39175 || || || | || || |||||||||||||||| ||| |||||||||||||| ||||| Sbjct 123237001 GAGAGTGCGGCCATCCTCCAGCTGTTTGCCCGCAAGTATCAGACGCTGCTGGTCAGGTGG 123236942 Query 39176 GCACGCTCTCTTTGTCCATGATTTT 39200 | | || ||| |||||| ||| ||| Sbjct 123236941 G-ATGCCCTCCTTGTCC-TGAATTT 123236919 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429542574119714