Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Homo_20sapiens_20[refseq_20GCF_5F000001405.37_202017-06-14] 578 sequences; 3,253,848,404 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq64 304 1e-77 seq1 143 2e-29 seq51 111 1e-19 seq11 98.7 8e-16 seq22 89.7 4e-13 seq20 82.4 7e-11 >seq64 Length=156040895 Score = 304 bits (336), Expect = 1e-77 Identities = 526/758 (69%), Gaps = 11/758 (1%) Strand=Plus/Plus Query 4379 TCGGTCAGCTACAAATTCTATATACTGGCTCATGAGTTCGCAGTTAATTCCAATTAATCT 4438 || ||| || ||||| || || || || |||| || ||| || || ||||| | | Sbjct 44309489 TCTGTCTGCCACAAACTCAATGTATTGCTTCATTAGAGTGCAATTCATCCCAATGAGCTT 44309548 Query 4439 CACAGGTAGCGCGTATGTCAAAAACTCTTGTTCTATAGTTACGGCTTCTGTGATTATATC 4498 |||||| | || | || | || ||||||||||| || || | | ||||| || Sbjct 44309549 CACAGGCAAGGCCTCGGTGAGGAATTCTTGTTCTATCTGAACAGCATTGATAATTATTTC 44309608 Query 4499 TTTTATTTTATCTTTAGATGGTTTATTTACTAAGTATCCAAACAATAAACACGCAAAATC 4558 | | | ||| || | |||||||| | ||| | || | |||| || || |||||||| Sbjct 44309609 TCTCACTTTCTCCTCCGATGGTTTGTGTACCAGGTGTTTGAACATCAAGCAAGCAAAATC 44309668 Query 4559 ACAATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAA 4618 ||| || ||||| || ||||||||||| ||||| || |||||||| | || ||||| Sbjct 44309669 ACAGTGTAAACCCTCTTCTCTGCTAATAAGTTCATTGGAAAACGTGAGGCCAGGCATCGG 44309728 Query 4619 ACCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTAC 4678 |||| || || ||||| ||||| | ||||| || ||||||||||| ||||||||||| Sbjct 44309729 TCCTCGTTTCTTGAGCCAGAATATCGATGCAAAAGAACCAGAAAAGAAGATGCCTTCTAC 44309788 Query 4679 GGCGGCAAACGCTACTAATCG-GGACCCGAACGAGCTGGCTTTGTCTTTAATCCATTTTA 4737 || ||||| ||||| | || ||| | ||| ||||||| |||||| | Sbjct 44309789 TGCAGCAAAGGCTACAACACGTTCACCATAGGTAGC-CTCTTTGTCCCCAATCCAGCGCA 44309847 Query 4738 ATGCCCAGTTAGCTTTTTTCTTAACGCACGGAATTGTGTATATAGCGTTAAA---TAATT 4794 | ||||| | || || ||||| || || || || || | || || || || |||| Sbjct 44309848 AGGCCCAATCTGCCTTCTTCTTGACACAAGGCATCGT-TCAATGGCATTGAAGAGAAATT 44309906 Query 4795 TACTTTTTTCAAATGGG-TCTTGAATATAAGTGTCTATTAGTAGGCTATACATTTCAGAA 4853 |||| || |||| |||| || |||||||| || || || ||||||||||||||| Sbjct 44309907 CCCTTTCTT----TGGGATCTTTGATGTAAGTGTCAATAAGGAGACTATACATTTCAGAA 44309962 Query 4854 TGTATATTTTCTATAGCAATCTGAAATCCGTAAAAGCATCTAGCTTCTGTTACTTGAACT 4913 ||||| ||||| || ||||| || || || || || || | |||||||| | |||||| Sbjct 44309963 TGTATGTTTTCCATGGCAATTTGGAAGCCATAGAAACAGCGGGCTTCTGTAATCTGAACT 44310022 Query 4914 TCGTTACAAAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAAAAAAC 4973 | | ||||| || || || ||||| |||| ||| || ||||| |||||||| || Sbjct 44310023 ATTTGGCTAAATCGCTCCACCAAATTTTCATTTATTATGCCATCACTTGCTGCAAAGAAA 44310082 Query 4974 GCCAAAACATGAGATATAAAGTACTGTTCGTCAGGCTTAAGTTTTTTCCAGTGGGGCAAA 5033 ||| |||||| |||||||| || || || ||||| || || |||||| | | Sbjct 44310083 ACCAGAACATGGGATATAAAATATCTCTCCTCGGGCTTCAGGGATTCCCAGTGCCGAATG 44310142 Query 5034 TCTTTAGTTAAATCAACTTCTTCAACAGTCCAAAACGACGCTTCCGCTTTTTTGTACATA 5093 || || | | || || || || ||||| || || || ||||| || | ||||| Sbjct 44310143 TCCTTGGACAGGTCCACCTCCTCGGTGGTCCAGAAGGAAGCCTCCGCCTTCTCATACATC 44310202 Query 5094 GACCAAATATCAGGATACTGAATCGGAAGTATGACAAA 5131 ||| |||||| | |||| || || | |||||||| Sbjct 44310203 TGCCAGATATCATGGTACTCGATGGGGAAGATGACAAA 44310240 Score = 165 bits (182), Expect = 7e-36 Identities = 387/574 (67%), Gaps = 25/574 (4%) Strand=Plus/Minus Query 4548 CACGCAAAATCACAATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAAT 4607 || ||||| | ||| || ||||| || || |||||||| ||||| || ||||| || | Sbjct 144309692 CAAGCAAAGTAACAGTGTAAACCCTCATCACTGCTAATAAGTTCATTGGAAAATGTGAGG 144309633 Query 4608 CCGGGCATTAAACCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAAT 4667 || ||||| | ||| || || ||||| ||||| ||||| || ||||||||||| Sbjct 144309632 CCAGGCATCAGTCCTTGTTTCTTGAGCCAGAATATCAATGCAAAAGAACCAGAAAAGAAG 144309573 Query 4668 ATGCCTTCTACGGCGGCAAACGCTACTAATCGGGACCCGAACGAGCTGGCTTT-GTCTTT 4726 ||| ||| || |||||| ||| | || | || || | ||| | |||||| Sbjct 144309572 GTGCTTTCCACCAGGGCAAAGGCTGC--AT-GCAACACGTTCTCCATGGGTAACGTCTTT 144309516 Query 4727 ------AATCCATTTTAATGCCCAGTTAGCTTTTTTCTTAACGCACGGAATTGTGTATAT 4780 |||||| || |||| || || ||||| || || || || || | || Sbjct 144309515 GTTCCCAATCCAACACAAGACCCAACCTGCCTTCTTCTTGACACA-GGCATCGTTTCAAT 144309457 Query 4781 AGCGTTAAATA---ATTTACTTTTTTCAAATGGG-TCTTGAATATAAGTGTCTATTAGTA 4836 || | || | ||| |||| || || |||| ||||| ||||| || || | Sbjct 144309456 GGCACTGAAGAGAAATTCCCTTTCTT----TGTTATCTTTAATAT--GTGTCAATAAGGA 144309403 Query 4837 GGCTATACATTTCAGAATGTATATTTTCTATAGCAATCTGAAATCCGTAAAAGCATCTAG 4896 | ||| |||||||||||||| |||||||||||||| || || || || ||||| | Sbjct 144309402 GATTATTTATTTCAGAATGTATGTTTTCTATAGCAATTTGGAAGCCATAGAAGCAGAAGG 144309343 Query 4897 CTTCTGTTACTTGAACTTCGTTACAAAATCTTTCTACTAAGTTTTCGTTTACTATACCGT 4956 |||||| | |||||||| | | |||| ||| || |||||||| | || ||| || | Sbjct 144309342 TTTCTGTAATCTGAACTTCTTGAACAAATTGTTCCACCAAGTTTTCATCTATTATCCCAT 144309283 Query 4957 CACTGGCTGCAAAAAACGCCAAAACATGAGATATAAAGTACTGTTCGTCAGGCTTAAGTT 5016 ||| |||||||| || |||| || ||| |||||||| || || |||||||| || Sbjct 144309282 CACATGCTGCAAAGAAAGCCAGAATATGGGATATAAAATATCTTTACTCAGGCTTCAGGG 144309223 Query 5017 TTTTCCAGTGGGGCAAA--TCTTTAGTTAAATCAACTTCTTCAACAGTCCAAAACGACGC 5074 || ||||| | |||| || || | | || || || | | |||| || || | Sbjct 144309222 CTTCCCAGT--GCCAAATGTCCTTGGACAGGTCCACCTCCTGGGCCATCCAGAAAGAAAC 144309165 Query 5075 TTCCGCTTTTTTGTACATAGACCAAATATCAGGA 5108 || |||| || ||||| |||||||||| || Sbjct 144309164 CTCTACTTTCTTTTACATTTTCCAAATATCATGA 144309131 >seq1 Length=248956422 Score = 143 bits (158), Expect = 2e-29 Identities = 141/182 (77%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 4812 TCTTGAATATAAGTGTCTATTAGTAGGCTATACATTTCAGAATGTATATTTTCTATAGCA 4871 |||| || |||||||| || || || |||||||||||||||||| | ||||| || ||| Sbjct 161378851 TCTTTTATGTAAGTGTCAATAAGGAGACTATACATTTCAGAATGTGTGTTTTCCATGGCA 161378910 Query 4872 ATCTGAAATCCGTAAAAGCATCTAGCTTCTGTTACTTGAACTTCGTTACAAAATCTTTCT 4931 || || || | || || || | |||||||| | |||||||| | | ||||| || Sbjct 161378911 ATTTGGAAGTCATAGAAACAGCGGGCTTCTGTAATCTGAACTTCTTGGCTAAATCGCTCC 161378970 Query 4932 ACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAAAAAACGCCAAAACATGAGATATA 4991 || |||||||| |||||||| || ||||| |||||||| || |||| |||| | |||||| Sbjct 161378971 ACCAAGTTTTCATTTACTATGCCATCACTTGCTGCAAAGAAAGCCAGAACACGGGATATA 161379030 Query 4992 AA 4993 || Sbjct 161379031 AA 161379032 >seq51 Length=58617616 Score = 111 bits (122), Expect = 1e-19 Identities = 211/304 (69%), Gaps = 9/304 (3%) Strand=Plus/Plus Query 31766 GCGCTAGTTAAAACCGATATTCAAATTTCTTTACCTTCAGGGTGCTACGGACGAATAGCT 31825 || || || ||||| || ||||| | | | ||||| || || || ||| || ||||| Sbjct 52451637 GCTCTTGTGAAAACGGACATTCAGACAGCGCTTCCTTCTGGATGTTATGGA-GAGTAGCT 52451695 Query 31826 CCTAGATCTGGATTGGCAGTTAAACACTTTATCGACGTGGGTGCGGGTGTTATAGATTCA 31885 || || ||||| ||||| | ||||||||| | || || || || ||| | | |||| | Sbjct 52451696 CCAAGGTCTGGCTTGGCTGCAAAACACTTTGTTGATGTAGGAGCTGGTATCACAGATGAA 52451755 Query 31886 GACTATAGAGGAAACGTTGGAATTGTGTTGTTTAATTTTGG---AGAAAAATCATACAGT 31942 || ||||||||||| ||||| |||| | ||||||||| | |||||| | | ||| Sbjct 52451756 GATTATAGAGGAAATGTTGGTGTTGTACTCTTTAATTTTTGCAAAGAAAAGT-TTGAAGT 52451814 Query 31943 ATAAAAAAGGGCGATAGGGTAGCTCAACTAATTTGCGAA--AAAATAGAAATGCCCCAAA 32000 |||||| || ||| | | || || || ||||| ||| | | ||| || ||| Sbjct 52451815 -CAAAAAAAGGTGATCGAATTGCACAGCTCATTTGTGAACGGATTTTTTAAT-CCAGAAA 52451872 Query 32001 TAGAAGTAGCTAATTATCTAGATTGCACGAAAAGAGGCGCTAAAGGCTTTGGATCTACCG 32060 |||||| || | | | | ||| ||| ||||| || | ||| ||||| ||||||| Sbjct 52451873 TAGAAGAAGTTCAAGCTTTGGATGACACCAAAAGGGGATCAGGAGGTTTTGGCTCTACCG 52451932 Query 32061 GAAA 32064 |||| Sbjct 52451933 GAAA 52451936 >seq11 Length=242193529 Score = 98.7 bits (108), Expect = 8e-16 Identities = 95/122 (78%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 4572 TCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAAACCTCTCTTTTTA 4631 || ||||||||||| ||||| |||||||| || | || ||||| | |||| || || Sbjct 10127219 TCATCTCTGCTAATAAGTTCATTAGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTCTTG 10127160 Query 4632 AGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTACGGCGGCAAACGCT 4691 ||||| ||||| | ||||| || || |||||||| |||||||| || || ||||| ||| Sbjct 10127159 AGCCAGAATATCGACGCAAAAGAACCGGAAAAGAAAATGCCTTCCACTGCAGCAAAGGCT 10127100 Query 4692 AC 4693 || Sbjct 10127099 AC 10127098 Score = 91.5 bits (100), Expect = 1e-13 Identities = 91/118 (77%), Gaps = 0/118 (0%) Strand=Plus/Minus Query 4809 GGGTCTTGAATATAAGTGTCTATTAGTAGGCTATACATTTCAGAATGTATATTTTCTATA 4868 || |||| || |||||||| || || || |||||||||||||||||||| ||||| || Sbjct 10124841 GGATCTTTTATGTAAGTGTCAATAAGAAGACTATACATTTCAGAATGTATGTTTTCCATG 10124782 Query 4869 GCAATCTGAAATCCGTAAAAGCATCTAGCTTCTGTTACTTGAACTTCGTTACAAAATC 4926 ||||| || || || || || || | |||||||| | |||||||| | | ||||| Sbjct 10124781 GCAATTTGGAAGCCATAGAAACAGCGGGCTTCTGTAATCTGAACTTCTTGGCTAAATC 10124724 >seq22 Length=145138636 Score = 89.7 bits (98), Expect = 4e-13 Identities = 98/130 (75%), Gaps = 3/130 (2%) Strand=Plus/Plus Query 4921 AAAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAAAAAACGCCAAAA 4980 |||||||| || || ||||| ||||| || || ||||||||||||||||| || || | Sbjct 102225908 AAAATCTT---ACCAAATTTTCATTTACAATTCCATCACTGGCTGCAAAAAAGGCTAAGA 102225964 Query 4981 CATGAGATATAAAGTACTGTTCGTCAGGCTTAAGTTTTTTCCAGTGGGGCAAATCTTTAG 5040 ||||| || ||||||| || || | ||||| || |||||||| || | ||| || | Sbjct 102225965 TGTGAGAGATGAAGTACTTCTCATCTGCTTTAAGCTTGTTCCAGTGAGGGAGATCCTTTG 102226024 Query 5041 TTAAATCAAC 5050 ||| || || Sbjct 102226025 ATAAGTCGAC 102226034 Score = 86.0 bits (94), Expect = 5e-12 Identities = 65/77 (84%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 4260 TGGTATTCGGATACTCGCTTTTCGAAGAAATTAGTTTTGCCTTCTAACGAAATATTTTCC 4319 || || || || ||||| || || |||||||| ||||| |||||||| ||||| |||||| Sbjct 102208194 TGATACTCTGAAACTCGTTTCTCAAAGAAATTTGTTTTTCCTTCTAAAGAAATGTTTTCC 102208253 Query 4320 ATAAAATCAAACGGATT 4336 ||||||||||| ||||| Sbjct 102208254 ATAAAATCAAAAGGATT 102208270 >seq20 Length=170805979 Score = 82.4 bits (90), Expect = 7e-11 Identities = 94/125 (75%), Gaps = 1/125 (1%) Strand=Plus/Minus Query 31802 TCAGGGTGCTACGGACGAATAGCTCCTAGATCTGGATTGGCAGTTAAACACTTTATCGAC 31861 || ||||| || ||| || ||| ||| | ||||| ||||| | ||||| ||||| || Sbjct 85426912 TCTGGGTGTTA-GGAAGAGTAGTTCCATGGTCTGGCTTGGCTGCAAAACATTTTATTGAT 85426854 Query 31862 GTGGGTGCGGGTGTTATAGATTCAGACTATAGAGGAAACGTTGGAATTGTGTTGTTTAAT 31921 || || || ||||| |||||| | | ||||||||||| ||||| ||| | |||||| Sbjct 85426853 GTAGGAGCTGGTGTCATAGATGAAAATTATAGAGGAAATGTTGGTGTTGCACTATTTAAT 85426794 Query 31922 TTTGG 31926 ||||| Sbjct 85426793 TTTGG 85426789 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427046591702474