Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Homo_20sapiens_20[refseq_20GCF_5F000001405.37_202017-06-14] 578 sequences; 3,253,848,404 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq64 389 6e-103 seq1 132 7e-26 seq11 125 1e-23 seq29 105 1e-17 seq22 105 1e-17 >seq64 Length=156040895 Score = 389 bits (430), Expect = 6e-103 Identities = 653/938 (70%), Gaps = 20/938 (2%) Strand=Plus/Plus Query 46283 TTTAAAAGTCGACATCTAAAGAAAAATGATTATCTTCTTG---TGACATAACTCCCATTT 46339 |||| ||||| ||| ||| | |||| ||| |||| | | ||||| |||||||| Sbjct 44309313 TTTAGAAGTCAGCATTTAAGGTAAAAGAATTCTCTTTTGGACTTGACACCACTCCCATCC 44309372 Query 46340 TTTGGTATTCACCTACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTTT 46399 | || || || ||||| | |||| || || ||||| ||| || ||| ||||| | Sbjct 44309373 TCTGATACTCGCCTACTCTCCTCTCAAAGAAGTTAGT-----CTTTCAGTGAAATATTCT 44309427 Query 46400 CCATAAAATCAAACGGATTAGTAACATTATAAAtttttttAAATCCTAATTCTGAAATCA 46459 || |||| ||||| || | || ||| || |||| || | ||| || | Sbjct 44309428 CCGTAAAGTCAAATGGGCTCTCTACTCCGAAAACCTTGCTAAAACCCAGTTCCAGCATAA 44309487 Query 46460 GTCTATCTGCAACGAATTCTATATACGTTTTCATCATTTCA---CAATTCATTCCTATGA 46516 |||| ||||| || || || || || || | ||||| | |||||||| || |||| Sbjct 44309488 GTCTGTCTGCCACAAACTCAATGTA---TTGCTTCATTAGAGTGCAATTCATCCCAATGA 44309544 Query 46517 GTTTGACCGGTAGAGCCTCCGTAAGAAACTCTTGTTCAATAGTGACAGCATCCGATA-TT 46575 | || || || | ||||| || || || |||||||| || ||||||| |||| || Sbjct 44309545 GCTTCACAGGCAAGGCCTCGGTGAGGAATTCTTGTTCTATCTGAACAGCATT-GATAATT 44309603 Query 46576 ATCGATGTTACTGTTTCCTCACTTGGTGGATGCATCAAATGTTTAAACATTAAACATGCA 46635 || | | ||| | ||||| |||| || | || ||||| ||||| || || ||| Sbjct 44309604 ATTTCTCTCACTTTCTCCTCCGATGGTTTGTGTACCAGGTGTTTGAACATCAAGCAAGCA 44309663 Query 46636 AAATCACAATGAAGGCCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAGGC 46695 |||||||| || | || || ||||| ||||| | ||| || ||||| ||||| |||||| Sbjct 44309664 AAATCACAGTGTAAACCCTCTTCTCTGCTAATAAGTTCATTGGAAAACGTGAGGCCAGGC 44309723 Query 46696 ATTAGTCCACGCTTTTTGAGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAATATGCCT 46755 || |||| || || |||||||| ||||| | || ||||| ||||||||||| |||||| Sbjct 44309724 ATCGGTCCTCGTTTCTTGAGCCAGAATATCGATGCAAAAGAACCAGAAAAGAAGATGCCT 44309783 Query 46756 TCTACAGCCGCGAATGCGACAAGTCTCTCTCCGTAACTGGCATCATTAT---GAATCCAC 46812 ||||| || || || || |||| | || || || | || || || | |||||| Sbjct 44309784 TCTACTGCAGCAAAGGCTACAACACGTTCACCATAGGTAGCCTCTTTGTCCCCAATCCAG 44309843 Query 46813 CTTTGAGCCCAATCAGCCTTTTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGA 46872 | |||||||| ||||| ||||| ||||||||||| | ||| || ||||| |||||| Sbjct 44309844 CGCAAGGCCCAATCTGCCTTCTTCTTGACACAAGGCATCG-TTCAATGGCATTGAAGAGA 44309902 Query 46873 AAGtttttttCATCACTATCTTTAACATATGTATCTATTAAAAGACTATACATTTCTGAA 46932 || | |||| | |||||| | || || || || | |||||||||||||| ||| Sbjct 44309903 AATTCCCTTTCTTTGGGATCTTTGATGTAAGTGTCAATAAGGAGACTATACATTTCAGAA 44309962 Query 46933 TGAATGTTTTCAATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATCTGTACC 46992 || |||||||| || || || || || || || ||||| | ||||| |||||||| || Sbjct 44309963 TGTATGTTTTCCATGGCAATTTGGAAGCCATAGAAACAGCGGGCTTCTGTAATCTGAACT 44310022 Query 46993 TCTGTACAAAATCGTTCAGACAAATTCTCATTCACTATTCCATCACTAGCAGCAAAAAAT 47052 | | |||||| || |||||| ||||| | ||| |||||||| || ||||| || Sbjct 44310023 ATTTGGCTAAATCGCTCCACCAAATTTTCATTTATTATGCCATCACTTGCTGCAAAGAAA 44310082 Query 47053 GCCAATACATGTTTAATAAAATATTTTTCATCGGTAGTCAGTTTATTCCAGTCATTGATA 47112 ||| ||||| ||||||||| | || |||| |||| | ||||| || Sbjct 44310083 ACCAGAACATGGGATATAAAATATCTCTCCTCGGGCTTCAGGGATTCCCAGTGCCGAATG 44310142 Query 47113 TCTTTTGATATATCTACTTCTTCAGCTGTCCAGAATGACGCCTCTGCTTTTTTATACATA 47172 || || || | || || || || | |||||||| || ||||| || || | |||||| Sbjct 44310143 TCCTTGGACAGGTCCACCTCCTCGGTGGTCCAGAAGGAAGCCTCCGCCTTCTCATACATC 44310202 Query 47173 TTCCATATATCACGATATTGGATCGGAAAAATAACAAA 47210 | ||| |||||| | || | ||| || || || ||||| Sbjct 44310203 TGCCAGATATCATGGTACTCGATGGGGAAGATGACAAA 44310240 Score = 215 bits (238), Expect = 7e-51 Identities = 390/566 (69%), Gaps = 12/566 (2%) Strand=Plus/Minus Query 46630 CATGCAAAATCACAATGAAGGCCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGC 46689 || ||||| | ||| || | || ||||| || ||||| | ||| || ||||||||||| Sbjct 144309692 CAAGCAAAGTAACAGTGTAAACCCTCATCACTGCTAATAAGTTCATTGGAAAATGTGAGG 144309633 Query 46690 CCAGGCATTAGTCCACGCTTTTTGAGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAAT 46749 |||||||| ||||| | || |||||||| ||||| || ||||| ||||||||||| Sbjct 144309632 CCAGGCATCAGTCCTTGTTTCTTGAGCCAGAATATCAATGCAAAAGAACCAGAAAAGAAG 144309573 Query 46750 ATGCCTTCTACAGCCGC-------GAATGCGACAAG-TCTCTCTCCGTAACTGGCATCAT 46801 ||| ||| || || | |||| ||| | |||| | ||||| | | | | Sbjct 144309572 GTGCTTTCCACCAGGGCAAAGGCTGCATGCAACACGTTCTCCATGGGTAAC-GTCTTTGT 144309514 Query 46802 TATGAATCCACCTTTGAGCCCAATCAGCCTTTTTCTTTACACAAGGCATTGTTTCTATAG 46861 | |||||| | ||||| | ||||| ||||| |||| |||||| ||||| || | Sbjct 144309513 TCCCAATCCAACACAAGACCCAACCTGCCTTCTTCTTGACAC-AGGCATCGTTTCAATGG 144309455 Query 46862 CATTAAAGAGAAAGtttttttCATCACTATCTTTAACATATGTATCTATTAAAAGACTAT 46921 || | |||||||| | |||| | |||||||| |||||| || || | ||| ||| Sbjct 144309454 CACTGAAGAGAAATTCCCTTTCTTTGTTATCTTTA--ATATGTGTCAATAAGGAGATTAT 144309397 Query 46922 ACATTTCTGAATGAATGTTTTCAATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCAG 46981 ||||| ||||| |||||||| ||||| || || || || || || || | ||| | Sbjct 144309396 TTATTTCAGAATGTATGTTTTCTATAGCAATTTGGAAGCCATAGAAGCAGAAGGTTTCTG 144309337 Query 46982 TAATCTGTACCTCTGTACAAAATCGTTCAGACAAATTCTCATTCACTATTCCATCACTAG 47041 ||||||| || ||| | |||| |||| ||| || |||| | ||| ||||||| | Sbjct 144309336 TAATCTGAACTTCTTGAACAAATTGTTCCACCAAGTTTTCATCTATTATCCCATCACATG 144309277 Query 47042 CAGCAAAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGTAGTCAGTTTATTCC 47101 | ||||| || |||| | ||| ||||||||| ||| || | |||| | || Sbjct 144309276 CTGCAAAGAAAGCCAGAATATGGGATATAAAATATCTTTACTCAGGCTTCAGGGCTTCCC 144309217 Query 47102 AGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAGAATGACGCCTCTGCTT 47161 ||| || || || || | || || || | || ||||||| || ||||| ||| Sbjct 144309216 AGTGCCAAATGTCCTTGGACAGGTCCACCTCCTGGGCCATCCAGAAAGAAACCTCTACTT 144309157 Query 47162 TTTTATACATATTCCATATATCACGA 47187 | || ||||| ||||| |||||| || Sbjct 144309156 TCTTTTACATTTTCCAAATATCATGA 144309131 >seq1 Length=248956422 Score = 132 bits (146), Expect = 7e-26 Identities = 240/349 (69%), Gaps = 9/349 (3%) Strand=Plus/Plus Query 46742 AAAAGAATATGCCTTCTACAGCCGCGAATGCGACAAGTCTCTCTCCGTAACTGGCATCAT 46801 ||||||| || |||| || || || || || |||| | || || || | || || | Sbjct 161378705 AAAAGAAGATATCTTCCACTGCAGCAAAGGCTACAACACATTCACCATAGGTAGCCTCTT 161378764 Query 46802 TATG---AATCCACCTTTGAGCCCAATCAGCCTTTTTCTTTACACAAGGCATTGTTTCTA 46858 | | ||| || || ||||||| ||||| ||| |||||||| |||||| | Sbjct 161378765 TGTCCCCAATACAACTCAAGGCCCAATTTGCCTT---CTTGACACAAGG---TGTTTCAA 161378818 Query 46859 TAGCATTAAAGAGAAAGtttttttCATCACTATCTTTAACATATGTATCTATTAAAAGAC 46918 | | || |||||||| | |||| | |||||| | || || || || | |||| Sbjct 161378819 TGGTGTTGAAGAGAAATTCCCTTTCTTTGGCATCTTTTATGTAAGTGTCAATAAGGAGAC 161378878 Query 46919 TATACATTTCTGAATGAATGTTTTCAATAGCCATCTGAAATCCGTAAAAACATCTTGCTT 46978 |||||||||| ||||| ||||||| || || || || || | || ||||| | |||| Sbjct 161378879 TATACATTTCAGAATGTGTGTTTTCCATGGCAATTTGGAAGTCATAGAAACAGCGGGCTT 161378938 Query 46979 CAGTAATCTGTACCTCTGTACAAAATCGTTCAGACAAATTCTCATTCACTATTCCATCAC 47038 | |||||||| || ||| | |||||| || ||| || ||||| ||||| ||||||| Sbjct 161378939 CTGTAATCTGAACTTCTTGGCTAAATCGCTCCACCAAGTTTTCATTTACTATGCCATCAC 161378998 Query 47039 TAGCAGCAAAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGT 47087 | || ||||| || |||| ||| | ||||||| | || ||||| Sbjct 161378999 TTGCTGCAAAGAAAGCCAGAACACGGGATATAAAATCACTCTCCTCGGT 161379047 >seq11 Length=242193529 Score = 125 bits (138), Expect = 1e-23 Identities = 102/124 (82%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 46654 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAGGCATTAGTCCACGCTTTTTG 46713 |||||||| ||||| | ||| |||||||||||||| |||||||| ||||| || || ||| Sbjct 10127219 TCATCTCTGCTAATAAGTTCATTAGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTCTTG 10127160 Query 46714 AGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACAGCCGCGAATGCG 46773 ||||| ||||| | ||| ||||| || |||||||| |||||||| || || || || || Sbjct 10127159 AGCCAGAATATCGACGCAAAAGAACCGGAAAAGAAAATGCCTTCCACTGCAGCAAAGGCT 10127100 Query 46774 ACAA 46777 |||| Sbjct 10127099 ACAA 10127096 Score = 86.0 bits (94), Expect = 9e-12 Identities = 91/120 (76%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 46890 ATCTTTAACATATGTATCTATTAAAAGACTATACATTTCTGAATGAATGTTTTCAATAGC 46949 |||||| | || || || || | ||||||||||||||| ||||| |||||||| || || Sbjct 10124839 ATCTTTTATGTAAGTGTCAATAAGAAGACTATACATTTCAGAATGTATGTTTTCCATGGC 10124780 Query 46950 CATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATCTGTACCTCTGTACAAAATCGTTC 47009 || || || || || ||||| | ||||| |||||||| || ||| | |||||| || Sbjct 10124779 AATTTGGAAGCCATAGAAACAGCGGGCTTCTGTAATCTGAACTTCTTGGCTAAATCGCTC 10124720 >seq29 Length=135086622 Score = 105 bits (116), Expect = 1e-17 Identities = 103/133 (77%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 75722 TGAAATTCTCCAGACAATACTCTTCGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 75781 ||||||||||| ||||| ||||| ||||| || || || ||||| || ||||| | || Sbjct 4132420 TGAAATTCTCCTGACAAGACTCTGCGAGTATAGATGTTGCTGGTGTAAGGTTCAATGGAC 4132361 Query 75782 TCATTGTTTCCCAAAATTTGAGCAGTTGAAGCAGTCGGCATAGGTGCCACCAATAAACTA 75841 ||||| || |||| || |||||||| ||||| || ||||| || || | | |||||| Sbjct 4132360 TCATTATTCCCCAGGATCTGAGCAGTGGAAGCTGTAGGCATCGGGGCAATAAGTAAACTG 4132301 Query 75842 TTTCTGAGACCAT 75854 ||||| | ||||| Sbjct 4132300 TTTCTTATACCAT 4132288 Score = 96.9 bits (106), Expect = 5e-15 Identities = 121/166 (73%), Gaps = 0/166 (0%) Strand=Plus/Minus Query 77339 CTAAATAGtttttttGTTTCCTTGTGTAGATTCGATACGGCTATTCTAGCAGCTAGAATT 77398 || || | ||| |||||||| ||||| | || || || || || || || || || || Sbjct 4106221 CTGAACACTTTCTTTGTTTCTTTGTGCAAGTTAGAGACAGCGATCCTGGCTGCCAGGATA 4106162 Query 77399 GCATAGTCAGGATGTTGTGTAGTGCAGGTGGCTGCTATTTCTGCCGCTAAAGTATCTAAT 77458 ||||||||||| || | ||||| |||| || ||| |||| || || |||||||||| | Sbjct 4106161 GCATAGTCAGGGTGCTTAGTAGTCAAGGTTGCAGCTGTTTCAGCAGCCAAAGTATCTAGT 4106102 Query 77459 TCTATAGTAGTAACTCCGTTATATAGCCCTTGAATAACTTTCATGG 77504 || | || || || || | || | ||||| || |||||||||| Sbjct 4106101 TCCACTGTGGTGACCCCACTGTACAAGCCTTGGATTACTTTCATGG 4106056 Score = 89.7 bits (98), Expect = 7e-13 Identities = 102/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 76994 GTTCCTGCATTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGATTG 77053 || || ||||| || | || || || |||||||| ||||| | |||||||| ||||| Sbjct 4112041 GTACCAGCATTGAAGAGAGTGGGCGAAGCATGAGTAAACCACCTCTCAGAAAGAAGATTA 4111982 Query 77054 TATGTTTCAATAACTGCTTCTATATCCCATTGATGAATTCCTACAGCGACACGCATCAAC 77113 ||||||||||| |||| || || || || || || || |||| || | ||||||| Sbjct 4111981 TATGTTTCAATTGCTGCATCAATGTCTTCTTTGTGGATCCCAACAGATACTCTCATCAAC 4111922 Query 77114 ATATGCTGAGGTCGTTC 77130 ||||| || |||| ||| Sbjct 4111921 ATATGTTGTGGTCTTTC 4111905 Score = 86.0 bits (94), Expect = 9e-12 Identities = 58/65 (89%), Gaps = 0/65 (0%) Strand=Plus/Minus Query 76520 TCAAATTCATCTCCCCAAACATCATCCAAACCAGGACATTCATTCGGACACATCAATGAC 76579 |||||||| ||||||||||| ||||||| ||||||||| ||||| ||||||||||| ||| Sbjct 4122205 TCAAATTCCTCTCCCCAAACCTCATCCAGACCAGGACACTCATTTGGACACATCAAAGAC 4122146 Query 76580 CACTC 76584 || || Sbjct 4122145 CAGTC 4122141 >seq22 Length=145138636 Score = 105 bits (116), Expect = 1e-17 Identities = 105/136 (77%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 46652 CTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAGGCATTAGTCCACGCTTTT 46711 |||||||||| || || | ||| || ||||| ||||| || ||||| || || | ||| | Sbjct 102218813 CTTCATCTCTGCTGATGAGTTCATTGGAAAAAGTGAGTCCTGGCATAAGACCTCTCTTCT 102218872 Query 46712 TGAGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACAGCCGCGAATG 46771 | ||||| |||||||| || |||||||| || ||||| | ||||||||||| || || | Sbjct 102218873 TTAGCCAGAATATAGCAGCAAAAGATCCTGAGAAGAAAACTCCTTCTACAGCAGCAAAGG 102218932 Query 46772 CGACAAGTCTCTCTCC 46787 | || | ||| || || Sbjct 102218933 CCACCACTCTTTCCCC 102218948 Score = 84.2 bits (92), Expect = 3e-11 Identities = 69/84 (82%), Gaps = 0/84 (0%) Strand=Plus/Plus Query 47127 TACTTCTTCAGCTGTCCAGAATGACGCCTCTGCTTTTTTATACATATTCCATATATCACG 47186 ||| ||||| ||||||||||| || |||| ||| | ||||||||| ||||| |||||| | Sbjct 102232146 TACCTCTTCTGCTGTCCAGAAGGAAGCCTGTGCCTGTTTATACATTTTCCAAATATCAGG 102232205 Query 47187 ATATTGGATCGGAAAAATAACAAA 47210 || ||||| ||||| || ||||| Sbjct 102232206 GTACTGGATTGGAAAGATGACAAA 102232229 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712929249048960