Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Macaca_20fascicularis_20[refseq_20GCF_5F000364345.1_202013-06-12]
7,601 sequences; 2,946,843,737 total letters
Query= NC_001132.2
Length=161773
Score E
Sequences producing significant alignments: (Bits) Value
seq481 221 1e-52
seq323 102 8e-17
>seq481
Length=152835861
Score = 221 bits (244), Expect = 1e-52
Identities = 587/886 (66%), Gaps = 27/886 (3%)
Strand=Plus/Plus
Query 16661 ACAACACCCATTCTTTGGTAATCGCTAACGCGTTTTTCGAAAAAGTTAGTTTTGCCCTCT 16720
|| || ||||| || || || || | || | || || || ||||| || || |
Sbjct 42596760 ACCACTCCCATCCTCTGATACTCCTTTACTCTCTTCTCAAAGAAGTTCGTCTTTC----- 42596814
Query 16721 AGAGATATATTCTCCATGAAATCAAAAGGATTAG-TAG-CTGAAAATATTTTAGAGTACC 16778
|| || ||||||||||| || ||||| || || || ||||||| || | | |
Sbjct 42596815 AGTGAAATATTCTCCATAAAGTCAAATGGGTTCTCTACTCTGAAAACCTTGCTAA--AAC 42596872
Query 16779 CCAGTTCGGCGATTAATCTATCCGCTACAAATTCTATATATTGGCACATTAATTCGCAGT 16838
||||||| | || ||| || || ||||| || || ||||| ||||| ||| |
Sbjct 42596873 CCAGTTCCGGCATG--TCTGTCTGCCACAAACTCAATGTATTGCTTCATTAGAGTGCAAT 42596930
Query 16839 TCATTCCTATAAGACGTACCGGAAGAGCTTCCGTCAAAAATCGTTGCTCTATAACAACCG 16898
|||| || || || || || | || || || | ||| || ||||| ||| |
Sbjct 42596931 TCATCCCAATGAGCTTCACAGGCAAGGCCTCAGTGAGGAATTCCTGTTCTATCCGAACAG 42596990
Query 16899 CTTCCTTAATAATACTAGCA---ACTCGTTCCTCGGACGGTGTATGTTTAAGATGTTTAA 16955
| | | ||||| || | |||| ||||| | ||| | ||| || || || |
Sbjct 42596991 CAT---TGATAATTCTTTCTCTTACTCTCTCCTCCAATGGTTTGTGTACCAGGTGATTGA 42597047
Query 16956 ACATCAGACATGCGAAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAA 17015
||||||| || || ||||| || ||||| ||||| |||| || |||||||| || ||||
Sbjct 42597048 ACATCAGGCAAGCAAAATCACAGTGTAAACCCTCATCTCCACTAATAAGTTCATTGGAAA 42597107
Query 17016 ATGTCAACCCGGGCATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAG 17075
| || | || |||||| |||||||||||| | ||| ||||||| || || | ||||
Sbjct 42597108 AGGTGAGGCCAGGCATCAGTCCTCGTTTCTTGAGCCAGAATATCGATGCAAAATAACCAG 42597167
Query 17076 AAAAGAATATACCCTCGACGGATGCAAACGCGATTAATCGTTCGGCGTACGTCGCGTCTT 17135
||||| || || || | | ||||| | | | ||||| | || || || |||
Sbjct 42597168 AAAAG---ATGCCTTCCGCTGCAGCAAAGACTACAACACGTTCCCCATAGGTAGCTGCTT 42597224
Query 17136 TGTTACGAATCCATTTCTGCACCCACTCGGCTTTTTGCTTTATGCAATCCATCGTTTCTA 17195
||| | |||||| | | |||| || || || | ||| | ||| ||||||||| |
Sbjct 42597225 TGTCCCCAATCCAGTGCAAGGCCCAATCTGCCTTCTTCTTGACACAAGGCATCGTTTCAA 42597284
Query 17196 TGGCCTTAAA--TAATTTCTCTTTTTCCTGTAGG-TCGATTATATACGTATCGATGAGTA 17252
|||| || || || ||| |||| || | || || |||| || || || || || |
Sbjct 42597285 TGGCATTGAAGCGAAATTCCCTTT---CTTTGGGATCTTTTATGTAAGTGTCAATAAGGA 42597341
Query 17253 GGCTGTACATTTCGGAGTGTATGTTCTCCATGGCTATCTGAAATCCGTAAAAGCATCGGG 17312
|| |||||| | || |||||||| |||||||| || || || || | || || ||||
Sbjct 42597342 AACTATACATTCCAGAATGTATGTTTTCCATGGCAATTTGGAAGCCACAGAAACAGCGGG 42597401
Query 17313 CTTCCGCTATTTGAACTTCCACGTAGAATCGTTCCGCTAGATTTTCGTTCACGATGCCGT 17372
|||| | | |||||||| | |||| ||| | | ||| | || || ||||| |
Sbjct 42597402 CTTCTGTCACCTGAACTTCTTGGCTACATCGCTCCACCAAGTTTGCATTTACTATGCCAT 42597461
Query 17373 CGCTCGCGGCGAAAAACGCCAATATATGCTTAATGAAATATTTTTCGTCCGGTGTAAGAA 17432
| || || || || || ||| | ||| || |||||| | || || || | || |
Sbjct 42597462 CACTTGC-GCAAAGAAAACCAGAACATGGGATATAAAATATCTCTCCTCGGGCTTCAGGA 42597520
Query 17433 CGCGCCAGTCCTTTAAATCTTTGGATATATCCACTTCTTCGGGGGTCCAAAAACTAGCCA 17492
||||| | | || ||||| ||||| || |||| |||||| || |||
Sbjct 42597521 ATTCCCAGTGCCAAATGTCCTTGGACGGGTCCACCTCCTCGGCGGTCCAGAAGGAAGCTT 42597580
Query 17493 CTGCCTTTTTATACATATTCCAAATATCATTGTATTGTATGGGGAA 17538
| ||||| |||||||| | ||| ||||||| ||| | ||||||||
Sbjct 42597581 CCGCCTTCTTATACATCTGCCAGATATCATGGTACTCGATGGGGAA 42597626
Score = 123 bits (136), Expect = 3e-23
Identities = 371/568 (65%), Gaps = 11/568 (2%)
Strand=Plus/Minus
Query 16959 TCAGACATGCGAAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAAATG 17018
|||| || || || | || ||||| ||||| || ||||| |||||||| || |||||||
Sbjct 141149881 TCAGGCAAGCAAAGTAACAGTGTAAACCCTCATCACTGCTAATAAGTTCATTGGAAAATG 141149822
Query 17019 TCAACCCGGGCATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAGAAA 17078
| | || |||||| |||| ||||||| | ||| |||||| || || || |||||||
Sbjct 141149821 TGAGGCCAGGCATCAGTCCTTGTTTCTTGAGCCAGAATATCAGTGCAAAAGAACCAGAAA 141149762
Query 17079 AGAATATACCCTCGACGGATGCAAACGCGATTAATCGTTCGGCGTACGTCGCGTCTTTGT 17138
|||| | | || || ||||| || | ||||| | | || |||||||||
Sbjct 141149761 AGAAGGTGCTTTCCACTAGGGCAAAGGCTGCAACACGTTCTCCATGGGTAACGTCTTTGT 141149702
Query 17139 TACGAATCCATTTCTGCACCCACTCGGCTTTTTGCTTTATGCAATCCATCGTTTCTATGG 17198
| | |||||| || ||||| | || || | ||| | | | ||| ||| | ||||
Sbjct 141149701 TCCCAATCCAACACTAGACCCAAACTGCCTTCTTCTTGACAC-AGGCATTGTTCCAATGG 141149643
Query 17199 CCTT--AAATAATTTCTCTTTTTCCTGTAGGTCGATTATATACGTATCGATGAGTAGGCT 17256
| || | | || ||| |||| | | | | || || || || || || || ||
Sbjct 141149642 CATTGAAGAGAAATTCCCTTTCT----TTGTTATCTTTAATGTGTGTCAATAAGGAGACT 141149587
Query 17257 GTACATTTCGGAGTGTATGTTCTCCATGGCTATCTGAAATCCGTAAAAGCATCGGGCTTC 17316
| || || || |||||||| || | || || || || || | ||||| || |||
Sbjct 141149586 ATTTATGTCAGAATGTATGTTTTCTGTAGCAATTTGGAAGCCATGGAAGCAGAAGGTTTC 141149527
Query 17317 CGCTATTTGAACTTCCACGTAGAATCGTTCCGCTAGATTTTCGTTCACGATGCCGTCGCT 17376
| || |||| ||| ||| ||||| | | ||||| | || || || || |
Sbjct 141149526 TGTAATCTGAATTTCTTGAACAAATTGTTCCACCAAGTTTTCATCTACTATCCCATCACA 141149467
Query 17377 CGCGGCGAAAAACGCC--AATATATGCTTAATGAAATATTTTTCGTCCGGTGTAAGAACG 17434
|| || || || ||| |||||| | | || |||||| |||| || || | || |
Sbjct 141149466 TGCTGCAAAGAAAGCCAGAATATAGGAT--ATAAAATATCTTTCCTCAGGCTTCAGGGCT 141149409
Query 17435 CGCCAGTCCTTTAAATCTTTGGATATATCCACTTCTTCGGGGGTCCAAAAACTAGCCACT 17494
||||| | | || ||||| | | ||| || | || |||| ||| | || ||
Sbjct 141149408 TCCCAGTGCCAAATGTCCTTGGACAGGTTCACCTCCTGGGCCATCCAGAAAGAAACCTCT 141149349
Query 17495 GCCTTTTTATACATATTCCAAATATCAT 17522
| || |||||| | |||||||||||||
Sbjct 141149348 ACTTTCTTATACGTTTTCCAAATATCAT 141149321
>seq323
Length=111193037
Score = 102 bits (112), Expect = 8e-17
Identities = 95/121 (79%), Gaps = 0/121 (0%)
Strand=Plus/Plus
Query 16986 CCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTCAACCCGGGCATCTTTCCTCGTTTCT 17045
|||| ||||||||||||||||| || |||||||| | || |||||| |||||||||||
Sbjct 100856187 CCTCATCTCTGCTGATAAGTTCATTGGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTCT 100856246
Query 17046 TTAACCAAAATATCGCGGCGAACGACCCAGAAAAGAATATACCCTCGACGGATGCAAACG 17105
| | ||| ||||||| || || || || |||||||| || || || || | ||||| |
Sbjct 100856247 TGAGCCAGAATATCGATGCAAAAGAACCGGAAAAGAAGATGCCTTCCACTGCGGCAAAGG 100856306
Query 17106 C 17106
|
Sbjct 100856307 C 100856307
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 517496426698680
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |