Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Macaca_20fascicularis_20[refseq_20GCF_5F000364345.1_202013-06-12] 7,601 sequences; 2,946,843,737 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq481 221 1e-52 seq323 102 8e-17 >seq481 Length=152835861 Score = 221 bits (244), Expect = 1e-52 Identities = 587/886 (66%), Gaps = 27/886 (3%) Strand=Plus/Plus Query 16661 ACAACACCCATTCTTTGGTAATCGCTAACGCGTTTTTCGAAAAAGTTAGTTTTGCCCTCT 16720 || || ||||| || || || || | || | || || || ||||| || || | Sbjct 42596760 ACCACTCCCATCCTCTGATACTCCTTTACTCTCTTCTCAAAGAAGTTCGTCTTTC----- 42596814 Query 16721 AGAGATATATTCTCCATGAAATCAAAAGGATTAG-TAG-CTGAAAATATTTTAGAGTACC 16778 || || ||||||||||| || ||||| || || || ||||||| || | | | Sbjct 42596815 AGTGAAATATTCTCCATAAAGTCAAATGGGTTCTCTACTCTGAAAACCTTGCTAA--AAC 42596872 Query 16779 CCAGTTCGGCGATTAATCTATCCGCTACAAATTCTATATATTGGCACATTAATTCGCAGT 16838 ||||||| | || ||| || || ||||| || || ||||| ||||| ||| | Sbjct 42596873 CCAGTTCCGGCATG--TCTGTCTGCCACAAACTCAATGTATTGCTTCATTAGAGTGCAAT 42596930 Query 16839 TCATTCCTATAAGACGTACCGGAAGAGCTTCCGTCAAAAATCGTTGCTCTATAACAACCG 16898 |||| || || || || || | || || || | ||| || ||||| ||| | Sbjct 42596931 TCATCCCAATGAGCTTCACAGGCAAGGCCTCAGTGAGGAATTCCTGTTCTATCCGAACAG 42596990 Query 16899 CTTCCTTAATAATACTAGCA---ACTCGTTCCTCGGACGGTGTATGTTTAAGATGTTTAA 16955 | | | ||||| || | |||| ||||| | ||| | ||| || || || | Sbjct 42596991 CAT---TGATAATTCTTTCTCTTACTCTCTCCTCCAATGGTTTGTGTACCAGGTGATTGA 42597047 Query 16956 ACATCAGACATGCGAAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAA 17015 ||||||| || || ||||| || ||||| ||||| |||| || |||||||| || |||| Sbjct 42597048 ACATCAGGCAAGCAAAATCACAGTGTAAACCCTCATCTCCACTAATAAGTTCATTGGAAA 42597107 Query 17016 ATGTCAACCCGGGCATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAG 17075 | || | || |||||| |||||||||||| | ||| ||||||| || || | |||| Sbjct 42597108 AGGTGAGGCCAGGCATCAGTCCTCGTTTCTTGAGCCAGAATATCGATGCAAAATAACCAG 42597167 Query 17076 AAAAGAATATACCCTCGACGGATGCAAACGCGATTAATCGTTCGGCGTACGTCGCGTCTT 17135 ||||| || || || | | ||||| | | | ||||| | || || || ||| Sbjct 42597168 AAAAG---ATGCCTTCCGCTGCAGCAAAGACTACAACACGTTCCCCATAGGTAGCTGCTT 42597224 Query 17136 TGTTACGAATCCATTTCTGCACCCACTCGGCTTTTTGCTTTATGCAATCCATCGTTTCTA 17195 ||| | |||||| | | |||| || || || | ||| | ||| ||||||||| | Sbjct 42597225 TGTCCCCAATCCAGTGCAAGGCCCAATCTGCCTTCTTCTTGACACAAGGCATCGTTTCAA 42597284 Query 17196 TGGCCTTAAA--TAATTTCTCTTTTTCCTGTAGG-TCGATTATATACGTATCGATGAGTA 17252 |||| || || || ||| |||| || | || || |||| || || || || || | Sbjct 42597285 TGGCATTGAAGCGAAATTCCCTTT---CTTTGGGATCTTTTATGTAAGTGTCAATAAGGA 42597341 Query 17253 GGCTGTACATTTCGGAGTGTATGTTCTCCATGGCTATCTGAAATCCGTAAAAGCATCGGG 17312 || |||||| | || |||||||| |||||||| || || || || | || || |||| Sbjct 42597342 AACTATACATTCCAGAATGTATGTTTTCCATGGCAATTTGGAAGCCACAGAAACAGCGGG 42597401 Query 17313 CTTCCGCTATTTGAACTTCCACGTAGAATCGTTCCGCTAGATTTTCGTTCACGATGCCGT 17372 |||| | | |||||||| | |||| ||| | | ||| | || || ||||| | Sbjct 42597402 CTTCTGTCACCTGAACTTCTTGGCTACATCGCTCCACCAAGTTTGCATTTACTATGCCAT 42597461 Query 17373 CGCTCGCGGCGAAAAACGCCAATATATGCTTAATGAAATATTTTTCGTCCGGTGTAAGAA 17432 | || || || || || ||| | ||| || |||||| | || || || | || | Sbjct 42597462 CACTTGC-GCAAAGAAAACCAGAACATGGGATATAAAATATCTCTCCTCGGGCTTCAGGA 42597520 Query 17433 CGCGCCAGTCCTTTAAATCTTTGGATATATCCACTTCTTCGGGGGTCCAAAAACTAGCCA 17492 ||||| | | || ||||| ||||| || |||| |||||| || ||| Sbjct 42597521 ATTCCCAGTGCCAAATGTCCTTGGACGGGTCCACCTCCTCGGCGGTCCAGAAGGAAGCTT 42597580 Query 17493 CTGCCTTTTTATACATATTCCAAATATCATTGTATTGTATGGGGAA 17538 | ||||| |||||||| | ||| ||||||| ||| | |||||||| Sbjct 42597581 CCGCCTTCTTATACATCTGCCAGATATCATGGTACTCGATGGGGAA 42597626 Score = 123 bits (136), Expect = 3e-23 Identities = 371/568 (65%), Gaps = 11/568 (2%) Strand=Plus/Minus Query 16959 TCAGACATGCGAAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAAATG 17018 |||| || || || | || ||||| ||||| || ||||| |||||||| || ||||||| Sbjct 141149881 TCAGGCAAGCAAAGTAACAGTGTAAACCCTCATCACTGCTAATAAGTTCATTGGAAAATG 141149822 Query 17019 TCAACCCGGGCATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAGAAA 17078 | | || |||||| |||| ||||||| | ||| |||||| || || || ||||||| Sbjct 141149821 TGAGGCCAGGCATCAGTCCTTGTTTCTTGAGCCAGAATATCAGTGCAAAAGAACCAGAAA 141149762 Query 17079 AGAATATACCCTCGACGGATGCAAACGCGATTAATCGTTCGGCGTACGTCGCGTCTTTGT 17138 |||| | | || || ||||| || | ||||| | | || ||||||||| Sbjct 141149761 AGAAGGTGCTTTCCACTAGGGCAAAGGCTGCAACACGTTCTCCATGGGTAACGTCTTTGT 141149702 Query 17139 TACGAATCCATTTCTGCACCCACTCGGCTTTTTGCTTTATGCAATCCATCGTTTCTATGG 17198 | | |||||| || ||||| | || || | ||| | | | ||| ||| | |||| Sbjct 141149701 TCCCAATCCAACACTAGACCCAAACTGCCTTCTTCTTGACAC-AGGCATTGTTCCAATGG 141149643 Query 17199 CCTT--AAATAATTTCTCTTTTTCCTGTAGGTCGATTATATACGTATCGATGAGTAGGCT 17256 | || | | || ||| |||| | | | | || || || || || || || || Sbjct 141149642 CATTGAAGAGAAATTCCCTTTCT----TTGTTATCTTTAATGTGTGTCAATAAGGAGACT 141149587 Query 17257 GTACATTTCGGAGTGTATGTTCTCCATGGCTATCTGAAATCCGTAAAAGCATCGGGCTTC 17316 | || || || |||||||| || | || || || || || | ||||| || ||| Sbjct 141149586 ATTTATGTCAGAATGTATGTTTTCTGTAGCAATTTGGAAGCCATGGAAGCAGAAGGTTTC 141149527 Query 17317 CGCTATTTGAACTTCCACGTAGAATCGTTCCGCTAGATTTTCGTTCACGATGCCGTCGCT 17376 | || |||| ||| ||| ||||| | | ||||| | || || || || | Sbjct 141149526 TGTAATCTGAATTTCTTGAACAAATTGTTCCACCAAGTTTTCATCTACTATCCCATCACA 141149467 Query 17377 CGCGGCGAAAAACGCC--AATATATGCTTAATGAAATATTTTTCGTCCGGTGTAAGAACG 17434 || || || || ||| |||||| | | || |||||| |||| || || | || | Sbjct 141149466 TGCTGCAAAGAAAGCCAGAATATAGGAT--ATAAAATATCTTTCCTCAGGCTTCAGGGCT 141149409 Query 17435 CGCCAGTCCTTTAAATCTTTGGATATATCCACTTCTTCGGGGGTCCAAAAACTAGCCACT 17494 ||||| | | || ||||| | | ||| || | || |||| ||| | || || Sbjct 141149408 TCCCAGTGCCAAATGTCCTTGGACAGGTTCACCTCCTGGGCCATCCAGAAAGAAACCTCT 141149349 Query 17495 GCCTTTTTATACATATTCCAAATATCAT 17522 | || |||||| | ||||||||||||| Sbjct 141149348 ACTTTCTTATACGTTTTCCAAATATCAT 141149321 >seq323 Length=111193037 Score = 102 bits (112), Expect = 8e-17 Identities = 95/121 (79%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 16986 CCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTCAACCCGGGCATCTTTCCTCGTTTCT 17045 |||| ||||||||||||||||| || |||||||| | || |||||| ||||||||||| Sbjct 100856187 CCTCATCTCTGCTGATAAGTTCATTGGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTCT 100856246 Query 17046 TTAACCAAAATATCGCGGCGAACGACCCAGAAAAGAATATACCCTCGACGGATGCAAACG 17105 | | ||| ||||||| || || || || |||||||| || || || || | ||||| | Sbjct 100856247 TGAGCCAGAATATCGATGCAAAAGAACCGGAAAAGAAGATGCCTTCCACTGCGGCAAAGG 100856306 Query 17106 C 17106 | Sbjct 100856307 C 100856307 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517496426698680