Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Macaca_20fascicularis_20[refseq_20GCF_5F000364345.1_202013-06-12] 7,601 sequences; 2,946,843,737 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq481 226 3e-54 seq228 107 2e-18 seq323 102 8e-17 >seq481 Length=152835861 Score = 226 bits (250), Expect = 3e-54 Identities = 591/888 (67%), Gaps = 25/888 (3%) Strand=Plus/Plus Query 15902 ACACCCATTCTTTGGTAATCACTAACGCGTTTTTCGAAGAAGTTAGTTTTTCCCTCTAAA 15961 || ||||| || || || || | || | || || |||||||| || |||| | Sbjct 42596763 ACTCCCATCCTCTGATACTCCTTTACTCTCTTCTCAAAGAAGTTCGTCTTTCAGT----- 42596817 Query 15962 GATATATTTTCCATAAAATCAAAGGGATTAG-TAG-CTGAAAATATCTTAGAGTACCCCA 16019 || ||||| |||||||| ||||| || || || ||||||| ||| | |||| Sbjct 42596818 GAAATATTCTCCATAAAGTCAAATGGGTTCTCTACTCTGAAAAC--CTTGCTAAAACCCA 42596875 Query 16020 GTTCCGTAACTAATCTATCTGCTACAAATTCTATATATTGACACATTA-AGTCGCAATTA 16078 |||||| | ||| ||||| ||||| || || ||||| ||||| ||| |||||| Sbjct 42596876 GTTCCGGCATG--TCTGTCTGCCACAAACTCAATGTATTGCTTCATTAGAGT-GCAATTC 42596932 Query 16079 ATTCCTATAAGTCGTACCGGAAGAGCTTTTGTTAAAAATTGTTGTTCTATCACAACCGCT 16138 || || || || || || | || | || | |||| ||||||||| ||| || Sbjct 42596933 ATCCCAATGAGCTTCACAGGCAAGGCCTCAGTGAGGAATTCCTGTTCTATCCGAACAGCA 42596992 Query 16139 TCTTTAATGATATCGGTGGCTCGTGTTTCAGACGGTGTATGGTTTAGGTGTTTAAACATT 16198 | |||| | || | ||| || | ||| | || ||||| || ||||| Sbjct 42596993 TTGATAATTCTTTCTCTTACTCTCTCCTCCAATGGTTTGTGTACCAGGTGATTGAACATC 42597052 Query 16199 AGACACGCGAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTT 16258 || || || || || || |||| || || |||| || |||||||| |||||||| || Sbjct 42597053 AGGCAAGCAAAATCACAGTGTAAACCCTCATCTCCACTAATAAGTTCATTGGAAAAGGTG 42597112 Query 16259 AACCCTGGCATTTTTCCTCGTTTCTTTAACCAGAATATCGCAGCAAATGACCCCGAAAAG 16318 | || ||||| |||||||||||| | ||||||||||| ||||| | || |||||| Sbjct 42597113 AGGCCAGGCATCAGTCCTCGTTTCTTGAGCCAGAATATCGATGCAAAATAACCAGAAAAG 42597172 Query 16319 AATATACCCTCAACAGATGCAAAAGCGATTAATCGTTCCGCGTACGTAGCATCTTTATTA 16378 || || || | | ||||| | | | |||||| | || ||||| |||| | Sbjct 42597173 ---ATGCCTTCCGCTGCAGCAAAGACTACAACACGTTCCCCATAGGTAGCTGCTTTGTCC 42597229 Query 16379 CGAATCCATTTCTGTACCCATTCGGCTTTTTGTTTTATACAATCCATCGTTTCTATGGCC 16438 | |||||| | | |||| || || || | || | |||| ||||||||| ||||| Sbjct 42597230 CCAATCCAGTGCAAGGCCCAATCTGCCTTCTTCTTGACACAAGGCATCGTTTCAATGGCA 42597289 Query 16439 TTAAA--CAATTTCTCTTTTTCCTGAATATCGATTATATACGTATCAATCAGTAAACTGT 16496 || || || ||| | |||| | ||| |||| || || ||||| || ||||| | Sbjct 42597290 TTGAAGCGAAATTCCC--TTTCTTTGGGATCTTTTATGTAAGTGTCAATAAGGAAACTAT 42597347 Query 16497 ACATTTCTGAGTGTATGTTCTCTATGGCTATCTGAAATCCATAGAAGCATCGAGCCTCCG 16556 ||||| | || |||||||| || ||||| || || || ||| |||| || || || || | Sbjct 42597348 ACATTCCAGAATGTATGTTTTCCATGGCAATTTGGAAGCCACAGAAACAGCGGGCTTCTG 42597407 Query 16557 CTATTTGTACTTCCACGTAAAATCGTTCCGCCAGGTTCTCATTCACGATACCGTCACTTG 16616 | || ||||| | | |||| ||| ||| ||| |||| || || || ||||||| Sbjct 42597408 TCACCTGAACTTCTTGGCTACATCGCTCCACCAAGTTTGCATTTACTATGCCATCACTTG 42597467 Query 16617 CAGCAA--AAAACGCCAATATGTGCTTAATGAAATATTTTTCGTCAGATGTAAGAATATG 16674 | |||| ||||| || ||| | | || |||||| | || || | | || | | Sbjct 42597468 C-GCAAAGAAAACCAGAACATGGGAT--ATAAAATATCTCTCCTCGGGCTTCAGGAATTC 42597524 Query 16675 CCAATCTTTTAAATCTTTGGATATATCCACTTCTTCTGGCGTCCAAAAGCTAGCCACTGC 16734 ||| | | || ||||| ||||| || || | ||||| ||| ||| | || Sbjct 42597525 CCAGTGCCAAATGTCCTTGGACGGGTCCACCTCCTCGGCGGTCCAGAAGGAAGCTTCCGC 42597584 Query 16735 CTTTTTATACATTTTCCAAATATCATTGTATTGTATGGGAAATACGAC 16782 ||| |||||||| | ||| ||||||| ||| | ||||| || | ||| Sbjct 42597585 CTTCTTATACATCTGCCAGATATCATGGTACTCGATGGGGAAGATGAC 42597632 Score = 134 bits (148), Expect = 1e-26 Identities = 378/571 (66%), Gaps = 12/571 (2%) Strand=Plus/Minus Query 16195 CATT-AGACACGCGAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAA 16253 |||| || || || |||| || |||| || || || ||||| |||||||| ||||||| Sbjct 141149884 CATTCAGGCAAGCAAAGTAACAGTGTAAACCCTCATCACTGCTAATAAGTTCATTGGAAA 141149825 Query 16254 AAGTTAACCCTGGCATTTTTCCTCGTTTCTTTAACCAGAATATCGCAGCAAATGACCCCG 16313 | || | || ||||| |||| ||||||| | |||||||||| ||||| || || | Sbjct 141149824 ATGTGAGGCCAGGCATCAGTCCTTGTTTCTTGAGCCAGAATATCAGTGCAAAAGAACCAG 141149765 Query 16314 AAAAGAATATACCCTCAACAGATGCAAAAGCGATTAATCGTTCCGCGTACGTAGCATCTT 16373 ||||||| | | || || ||||| || | ||||| | | ||| | |||| Sbjct 141149764 AAAAGAAGGTGCTTTCCACTAGGGCAAAGGCTGCAACACGTTCTCCATGGGTAACGTCTT 141149705 Query 16374 TATTACGAATCCATTTCTGTACCCATTCGGCTTTTTGTTTTATACAATCCATCGTTTCTA 16433 | || | |||||| || ||||| | || || | || | ||| | || ||| | | Sbjct 141149704 TGTTCCCAATCCAACACTAGACCCAAACTGCCTTCTTCTTGACACAGGC-ATTGTTCCAA 141149646 Query 16434 TGGCCTTAAACA--ATTTCTCTTTTTCCTGAATATCGATTATATACGTATCAATCAGTAA 16491 |||| || || | | ||| |||| | || |||| | || | || ||||| || | Sbjct 141149645 TGGCATTGAAGAGAAATTCCCTTTCTT-TGT-TATCTTTAATGT--GTGTCAATAAGGAG 141149590 Query 16492 ACTGTACATTTCTGAGTGTATGTTCTCTATGGCTATCTGAAATCCATAGAAGCATCGAGC 16551 ||| | || || || |||||||| ||| | || || || || |||| |||||| | Sbjct 141149589 ACTATTTATGTCAGAATGTATGTTTTCTGTAGCAATTTGGAAGCCATGGAAGCAGAAGGT 141149530 Query 16552 CTCCGCTATTTGTACTTCCACGTAAAATCGTTCCGCCAGGTTCTCATTCACGATACCGTC 16611 || | || || | ||| |||| ||||| ||| ||| |||| || || || || Sbjct 141149529 TTCTGTAATCTGAATTTCTTGAACAAATTGTTCCACCAAGTTTTCATCTACTATCCCATC 141149470 Query 16612 ACTTGCAGCAAAAAACGCCA--ATATGTGCTTAATGAAATATTTTTCGTCAGATGTAAGA 16669 || ||| ||||| || |||| |||| | | || |||||| |||| |||| | || Sbjct 141149469 ACATGCTGCAAAGAAAGCCAGAATATAGGAT--ATAAAATATCTTTCCTCAGGCTTCAGG 141149412 Query 16670 ATATGCCAATCTTTTAAATCTTTGGATATATCCACTTCTTCTGGCGTCCAAAAGCTAGCC 16729 | ||| | | || ||||| | | ||| || | | | |||| || | || Sbjct 141149411 GCTTCCCAGTGCCAAATGTCCTTGGACAGGTTCACCTCCTGGGCCATCCAGAAAGAAACC 141149352 Query 16730 ACTGCCTTTTTATACATTTTCCAAATATCAT 16760 || | || |||||| ||||||||||||||| Sbjct 141149351 TCTACTTTCTTATACGTTTTCCAAATATCAT 141149321 >seq228 Length=146850525 Score = 107 bits (118), Expect = 2e-18 Identities = 104/134 (78%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 16224 CTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAACCCTGGCATTTTTCCTCGTTTCT 16283 |||| ||||||||||| ||||| ||||||||||| | |||||||| |||| |||| Sbjct 103367669 CTTCATCTCTGCTGATGAGTTCATTGGAAAAAGTGAGTCCTGGCATAAGACCTCTCTTCT 103367728 Query 16284 TTAACCAGAATATCGCAGCAAATGACCCCGAAAAGAATATACCCTCAACAGATGCAAAAG 16343 ||| ||||||||| |||||||| || || || ||||| || || || |||| ||||| | Sbjct 103367729 TTAGCCAGAATATAGCAGCAAAAGATCCTGAGAAGAAAATTCCTTCTACAGCAGCAAAGG 103367788 Query 16344 CGATTAATCGTTCC 16357 | | | || |||| Sbjct 103367789 CCACCACTCTTTCC 103367802 >seq323 Length=111193037 Score = 102 bits (112), Expect = 8e-17 Identities = 94/119 (79%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 16226 TCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAACCCTGGCATTTTTCCTCGTTTCTTT 16285 || ||||||||||||||||| |||||||| || | || ||||| |||||||||||| Sbjct 100856189 TCATCTCTGCTGATAAGTTCATTGGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTCTTG 100856248 Query 16286 AACCAGAATATCGCAGCAAATGACCCCGAAAAGAATATACCCTCAACAGATGCAAAAGC 16344 | ||||||||||| ||||| || || |||||||| || || || || | ||||| || Sbjct 100856249 AGCCAGAATATCGATGCAAAAGAACCGGAAAAGAAGATGCCTTCCACTGCGGCAAAGGC 100856307 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511365809239320