Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Macaca_20fascicularis_20[refseq_20GCF_5F000364345.1_202013-06-12] 7,601 sequences; 2,946,843,737 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq481 313 3e-80 seq228 116 4e-21 seq336 114 2e-20 seq313 107 2e-18 seq323 104 3e-17 seq434 95.1 1e-14 seq246 87.8 2e-12 >seq481 Length=152835861 Score = 313 bits (346), Expect = 3e-80 Identities = 636/938 (68%), Gaps = 25/938 (3%) Strand=Plus/Plus Query 23788 TTTAAAAGTCAACATCTAAAGAAAAATGATTGTCTTCTTGA---GACATAACTCCCATTT 23844 |||| |||||| |||| || | |||| ||| ||| | || |||| |||||||| Sbjct 42596713 TTTAGAAGTCAGCATCCAAGGTAAAAGAATTCTCTGTTGGATTCGACACCACTCCCATCC 42596772 Query 23845 TTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTCTAATGATATATTTT 23904 | || || || || | || || || || || || || | | ||| ||||| | Sbjct 42596773 TCTGATACTCCTTTACTCTCTTCTCAAAGAAGTTCGTCTTTC-----AGTGAAATATTCT 42596827 Query 23905 CCATGAAATCGGATGGATTGGTAACATTATAGATTCTTTTAAATCCCAATTCAGAAATCA 23964 |||| || || |||| || || | | | | |||| |||| ||| | || Sbjct 42596828 CCATAAAGTCAAATGGGTTCTCTACTCTGAAAACCTTGCTAAAACCCAGTTCCGGCATG- 42596886 Query 23965 ATCTATCTGCGACAAACTCCATATATGTTTTCATCATTTCACAATTCATTCCTATAAGTT 24024 ||| ||||| |||||||| || ||| ||||| | |||||||| || || || | Sbjct 42596887 -TCTGTCTGCCACAAACTCAATGTATTGCTTCATTAGAGTGCAATTCATCCCAATGAGCT 42596945 Query 24025 TAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAATAG 24084 | || || | ||| |||| || ||||| ||||| || || || | | || | Sbjct 42596946 TCACAGGCAAGGCCTCAGTGAGGAATTCCTGTTCTATCCGAACAGCATTGATAATTCTTT 42597005 Query 24085 ATCTTACTGTTTCTTCACTCGGTGGATACAATAAATGTTTAAACATCAAACATGCGAAAT 24144 ||||||| | || || ||| | | | || || ||||||| || || |||| Sbjct 42597006 CTCTTACTCTCTCCTCCAATGGTTTGTGTACCAGGTGATTGAACATCAGGCAAGCAAAAT 42597065 Query 24145 CGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTA 24204 | ||||||| |||||| |||| |||||| | ||| |||||||| ||||| || ||||| | Sbjct 42597066 CACAGTGTAAACCCTCATCTCCACTAATAAGTTCATTGGAAAAGGTGAGGCCAGGCATCA 42597125 Query 24205 GGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTA 24264 | || || || || ||||| ||||| || ||||| | |||||||||| | ||||| Sbjct 42597126 GTCCTCGTTTCTTGAGCCAGAATATCGATGCAAAATAACCAGAAAAGA---TGCCTTCCG 42597182 Query 24265 CTGCCGCAAAGGCAATAAGTCTTTCTCCATA---ACCGGCGCTGTCATGTATCCACTTTT 24321 |||| |||||| | | || | ||| ||||| | | || |||| ||||| | Sbjct 42597183 CTGCAGCAAAGACTACAACACGTTCCCCATAGGTAGCTGCTTTGTCCCCAATCCAGTGCA 42597242 Query 24322 GAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAGATAGt 24381 |||||||| |||||||| || ||||||||||| || || || ||||| ||| || | | Sbjct 42597243 AGGCCCAATCTGCCTTCTTCTTGACACAAGGCATCGTTTCAATGGCATTGAAGCGAAATT 42597302 Query 24382 ttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAA 24441 |||| || |||||| | || || ||||| | | |||||||||| | ||||| | Sbjct 42597303 CCCTTTCTTTGGGATCTTTTATGTAAGTGTCAATAAGGAAACTATACATTCCAGAATGTA 42597362 Query 24442 TGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTA 24501 ||||||| ||||| ||||| || || ||||||| | || || || | ||| |||||| Sbjct 42597363 TGTTTTCCATGGCAATTTGGAAGCCACAGAAACAGCGGGCTTCTGTCACCTGAACTTCTT 42597422 Query 24502 TACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCA 24561 | | |||| || | || ||| |||| ||||| || ||||| || ||||| || ||| Sbjct 42597423 GGCTACATCGCTCCACCAAGTTTGCATTTACTATGCCATCACTTGC-GCAAAGAAAACCA 42597481 Query 24562 ATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTG----ATA 24617 ||||| |||||||||| | || || || | || ||||| || || || Sbjct 42597482 GAACATGGGATATAAAATATCTCTCCTCGGGCTTCAG-GAATTCC---CAGTGCCAAATG 42597537 Query 24618 TCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATA 24677 || || || ||||| || || | ||||| || || || || ||||| |||||||| Sbjct 42597538 TCCTTGGACGGGTCCACCTCCTCGGCGGTCCAGAAGGAAGCTTCCGCCTTCTTATACATC 42597597 Query 24678 TTCCAGATGTCATGATATTGAATTGGAAAAATAACAAA 24715 | |||||| ||||| || | || || || || ||||| Sbjct 42597598 TGCCAGATATCATGGTACTCGATGGGGAAGATGACAAA 42597635 Score = 210 bits (232), Expect = 3e-49 Identities = 380/550 (69%), Gaps = 8/550 (1%) Strand=Plus/Minus Query 24147 CAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGG 24206 ||||||| |||||| || || ||||| | ||| |||||||| ||||| || ||||| || Sbjct 141149864 CAGTGTAAACCCTCATCACTGCTAATAAGTTCATTGGAAAATGTGAGGCCAGGCATCAGT 141149805 Query 24207 CCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACT 24266 || | || || ||||| ||||| ||||| || ||||||||||| | | ||| ||| Sbjct 141149804 CCTTGTTTCTTGAGCCAGAATATCAGTGCAAAAGAACCAGAAAAGAAGGTGCTTTCCACT 141149745 Query 24267 GCCGCAAAGGCAATAAGTCTTTCTCCAT---AACCGGCGCTGTCATGTATCC-ACTTTTG 24322 |||||||| || | |||||||| | || | ||| |||| || | | Sbjct 141149744 AGGGCAAAGGCTGCAACACGTTCTCCATGGGTAACGTCTTTGTTCCCAATCCAACACTAG 141149685 Query 24323 AGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAGATAGtt 24382 | ||||| | |||||||| || |||| ||||||||| | || ||||| |||||| | | Sbjct 141149684 A-CCCAAACTGCCTTCTTCTTGACAC-AGGCATTGTTCCAATGGCATTGAAGAGAAATTC 141149627 Query 24383 tttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAAT 24442 |||| || |||||||| || ||| ||||| | ||||||| || || ||||| || Sbjct 141149626 CCTTTCTTTGTTATCTTTA--ATGTGTGTCAATAAGGAGACTATTTATGTCAGAATGTAT 141149569 Query 24443 GTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTAT 24502 |||||| | || ||||| || || | ||| || | || |||||||| | |||| Sbjct 141149568 GTTTTCTGTAGCAATTTGGAAGCCATGGAAGCAGAAGGTTTCTGTAATCTGAATTTCTTG 141149509 Query 24503 ACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAA 24562 | |||| |||| | || ||||||| ||||| || |||| |||||||| || |||| Sbjct 141149508 AACAAATTGTTCCACCAAGTTTTCATCTACTATCCCATCACATGCTGCAAAGAAAGCCAG 141149449 Query 24563 TACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGATATCTTT 24622 | || |||||||||| |||| || || | || | ||| | || || || Sbjct 141149448 AATATAGGATATAAAATATCTTTCCTCAGGCTTCAGGGCTTCCCAGTGCCAAATGTCCTT 141149389 Query 24623 AGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCA 24682 || | | ||| || | | |||| || || ||||| | || |||||| | ||||| Sbjct 141149388 GGACAGGTTCACCTCCTGGGCCATCCAGAAAGAAACCTCTACTTTCTTATACGTTTTCCA 141149329 Query 24683 GATGTCATGA 24692 || |||||| Sbjct 141149328 AATATCATGA 141149319 >seq228 Length=146850525 Score = 116 bits (128), Expect = 4e-21 Identities = 106/134 (79%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 24159 TCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 24218 || ||||| || || | ||| |||||||| |||||||| ||||| || || | ||| || Sbjct 103367671 TCATCTCTGCTGATGAGTTCATTGGAAAAAGTGAGTCCTGGCATAAGACCTCTCTTCTTT 103367730 Query 24219 AGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCA 24278 ||||| ||||| | ||||| ||||| || ||||||||||||||||| || |||||||| Sbjct 103367731 AGCCAGAATATAGCAGCAAAAGATCCTGAGAAGAAAATTCCTTCTACAGCAGCAAAGGCC 103367790 Query 24279 ATAAGTCTTTCTCC 24292 | | |||||| || Sbjct 103367791 ACCACTCTTTCCCC 103367804 >seq336 Length=130733371 Score = 114 bits (126), Expect = 2e-20 Identities = 128/171 (75%), Gaps = 0/171 (0%) Strand=Plus/Plus Query 52875 TCCATCCGTAAAAATGCATACTTGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 52934 |||| ||||| || |||||||| || |||||| ||| | || || || || ||||||| Sbjct 66502180 TCCAGCCGTAGAAGTGCATACTAGTGAGTTTGCCATAGTTAGGCTCAGCAATGTGGATAT 66502239 Query 52935 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 52994 ||| |||||| |||||||| ||||| || || || || || ||||| || | | || | Sbjct 66502240 TCAAAGATTGGCTTTGATCAATGAAAGCACCTCTCTCAGCTGCCATCTTGAGAACGGTTT 66502299 Query 52995 TTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAA 53045 | || | |||||||| | ||||||||||| | |||| | || || |||| Sbjct 66502300 TCTGAGAGATTTCCCACACAGTTTTATAAAGTTGCTTCAGGTCATCAGGAA 66502350 Score = 107 bits (118), Expect = 2e-18 Identities = 106/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 53150 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACA 53209 || ||||||||||| ||||| ||||| ||||| || || || ||||| || ||||| | Sbjct 66505027 ACCTGAAATTCTCCTGACAAGACTCTGCGAGTATAGATGTTGCTGGTGTAAGGTTCAATG 66505086 Query 53210 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAA 53269 ||||||||||| |||| || |||||||| || || || ||||| || || | | |||| Sbjct 66505087 GACTCATTATTCCCCAGGATCTGAGCAGTGGAAGCTGTAGGCATCGGGGCAATAAGTAAA 66505146 Query 53270 CTATTTCTAAGACCGTA 53286 || ||||| | ||| || Sbjct 66505147 CTGTTTCTTATACCATA 66505163 Score = 105 bits (116), Expect = 8e-18 Identities = 102/131 (78%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 54029 ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGT 54088 ||||||||||| |||||||| |||||||||||||| | || |||||||||| | || Sbjct 66516550 ACTCGTTTCATGAAGAGATCCGGAATCCAAAGAGCAAAGAAAAGATCTCTGGCACGCTGC 66516609 Query 54089 TCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGT 54148 ||||| |||||||| ||||| || | ||| ||||| | | || || ||||||| || Sbjct 66516610 TCCTCCTTTCCTGTGTTCTTCTTTAAATCAAGGAATTCAAAGATGTCTAAATGCCAAGGC 66516669 Query 54149 TCCAAGTATAT 54159 |||| ||| || Sbjct 66516670 TCCAGGTAAAT 66516680 Score = 87.8 bits (96), Expect = 2e-12 Identities = 119/166 (72%), Gaps = 0/166 (0%) Strand=Plus/Plus Query 54768 CACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTAGAA 54827 |||| || | ||| |||||||||||||||| || || || || || || || || || | Sbjct 66536562 CACTGAACACTTTCTTTGTTTCTTTGTGTAAGTTAGAGACAGCAATCCTGGCTGCCAGGA 66536621 Query 54828 TGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGTCAGAGTGTCCA 54887 | ||||| || || || | ||||| | || || ||| |||| || | || ||| || | Sbjct 66536622 TAGCATAGTCAGGGTGCTTAGTAGTCAAGGTTGCAGCTGTTTCAGCAGCCAAAGTATCTA 66536681 Query 54888 ATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTCAT 54933 ||| || || || || ||| | || | |||||||| || ||||| Sbjct 66536682 GTTCCACTGTGGTGACCCCACTGTACAAGCCTTGGATTACTTTCAT 66536727 >seq313 Length=132586672 Score = 107 bits (118), Expect = 2e-18 Identities = 180/257 (70%), Gaps = 10/257 (4%) Strand=Plus/Minus Query 21883 TCCGGTTGATCCAAACCCT--TGATCTCCTCTATCTGTACTATCTAGAGATTGTACTTCT 21940 ||| || || |||||||| ||| | ||| | ||| ||| | || ||| |||||| Sbjct 63792738 TCCAGTGGAACCAAACCCACCTGAACCCCTTTCGGTGTC--ATCCAAAGCTTGAACTTCT 63792681 Query 21941 TTCAGTTCTGGATAATATATACGTTGATAGATTAGCTGAGCTATTCTATCCCCCGTATTT 22000 | |||||||||| | || |||| | || ||||| || |||| ||| ||| | || Sbjct 63792680 AT---TTCTGGATAAAAAATCCGTTCGCAAATGAGCTGTGCAATTCGATCACCCTTTTTG 63792624 Query 22001 ACATTAAATGTATATTTTCCATTATTAATAAGAATGACTCCTATATTTCCCCTATAATCT 22060 || | ||| | | ||| ||| ||||| || | || || | |||||| ||||||||| Sbjct 63792623 ACTTCAAACTTTTCTTTGCCAAAATTAAACAGTACAACACCAACATTTCCTCTATAATCT 63792564 Query 22061 TCGTCTATTACACCGCCTCCTATATCAAT---GCCTTTTAGGGACAGACCAGACCTAGGA 22117 || ||||| ||||| |||||| |||||| | |||| | || || ||||| ||| Sbjct 63792563 TCATCTATGACACCAGCTCCTACATCAATAAAGTGTTTTGCAGCCAAGCCTGACCTTGGA 63792504 Query 22118 GCTATTCTACCATAGCA 22134 |||| ||| ||||| || Sbjct 63792503 GCTACTCTTCCATAACA 63792487 >seq323 Length=111193037 Score = 104 bits (114), Expect = 3e-17 Identities = 95/120 (79%), Gaps = 0/120 (0%) Strand=Plus/Plus Query 24395 ATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGC 24454 |||||| | || || ||||| | ||||||||||||||| ||||| |||||||| ||||| Sbjct 100858292 ATCTTTTATGTAAGTGTCAATAAGAAGACTATACATTTCAGAATGTATGTTTTCCATGGC 100858351 Query 24455 CATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTATACAAAATCGTTC 24514 ||||| || || |||||||| | || || |||||||| |||||| | |||||| || Sbjct 100858352 AATTTGGAAGCCATAGAAACAGCGGGCTTCTGTAATCTGAACTTCTTGGCTAAATCGCTC 100858411 >seq434 Length=59248254 Score = 95.1 bits (104), Expect = 1e-14 Identities = 177/255 (69%), Gaps = 9/255 (4%) Strand=Plus/Minus Query 21883 TCCGGTTGATCCAAACCCT--TGATCTCCTCTATCTGTACTATCTAGAGATTGTACTTCT 21940 ||| || || ||||| ||| ||| | ||| | ||| ||| | || ||| |||||| Sbjct 53168802 TCCAGTAGAACCAAAACCTCCTGAACCCCTTTTGGTGTC--ATCCAAAGCTTGAACTTCT 53168745 Query 21941 TTCAGTTCTGGATAATATATACGTTGATAGATTAGCTGAGCTATTCTATCCCCCGTATTT 22000 | | ||||||||| | || |||| | | || ||||| || |||| ||| | ||||| Sbjct 53168744 TCTATTTCTGGATAGAACATCCGTTCACAAATGAGCTGTGCAATTCGATCACGT-TATTT 53168686 Query 22001 -ACATTAAATGTATATTTTCCATTATTAATAAGAATGACTCCTATATTTCCCCTATAATC 22059 || | ||| | | ||| ||| ||||| | | || || |||||||| |||||||| Sbjct 53168685 GACTTCAAACTTTTCTTTGCCAAAATTAAAGACTACAACACCAATATTTCCTCTATAATC 53168626 Query 22060 TTCGTCTATTACACCGCCTCCTATAT---CAATGCCTTTTAGGGACAGACCAGACCTAGG 22116 ||| ||| | ||||| |||||| || ||| | |||| | || ||||||| || Sbjct 53168625 TTCATCTGTGACACCAGCTCCTACATCTACAACGGGTTTTGCAGCCAAGCCAGACCGTGG 53168566 Query 22117 AGCTATTCTACCATA 22131 ||||| ||| ||||| Sbjct 53168565 AGCTACTCTTCCATA 53168551 >seq246 Length=133195287 Score = 87.8 bits (96), Expect = 2e-12 Identities = 120/168 (71%), Gaps = 0/168 (0%) Strand=Plus/Plus Query 21922 ATCTAGAGATTGTACTTCTTTCAGTTCTGGATAATATATACGTTGATAGATTAGCTGAGC 21981 ||| | || ||| ||||||| | |||||||||| | || |||| | || ||||| || Sbjct 91140591 ATCCAAAGCTTGAACTTCTTCTATTTCTGGATAAAAAATCCGTTCGCAAATGAGCTGTGC 91140650 Query 21982 TATTCTATCCCCCGTATTTACATTAAATGTATATTTTCCATTATTAATAAGAATGACTCC 22041 |||| ||| | | | || || | ||| | | ||| ||| |||| || | | || Sbjct 91140651 AATTCGATCACACTTTTTGACTTCAAACTTTTCTTTGCCAAAGTTAAACAGTACACCACC 91140710 Query 22042 TATATTTCCCCTATAATCTTCGTCTATTACACCGCCTCCTATATCAAT 22089 | |||||| ||||||||||| ||||| ||||| |||||| |||||| Sbjct 91140711 AACATTTCCTCTATAATCTTCATCTATGACACCAGCTCCTACATCAAT 91140758 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593665189026480