Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Macaca_20fascicularis_20[refseq_20GCF_5F000364345.1_202013-06-12] 7,601 sequences; 2,946,843,737 total letters Query= NC_001623.1 Length=133894 Score E Sequences producing significant alignments: (Bits) Value seq355 113 4e-20 seq202 111 1e-19 seq228 86.0 5e-12 seq481 84.2 2e-11 >seq355 Length=112612857 Score = 113 bits (124), Expect = 4e-20 Identities = 154/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 28959 AAAATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCC 29018 |||||||| || ||||| ||||| | | ||| || ||||| ||| ||| | |||||| Sbjct 67551293 AAAATGCAGATTTTCATGAAAACCCTTATGGGGAAGACCATCACCCTCGAGGCTGAACCC 67551234 Query 29019 GCAGAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGAT 29078 |||| ||| | || | ||| | || ||||| ||||| | || ||| Sbjct 67551233 TCAGATACGATATAAAATGTAAAGGCCGAGATCCAGGATAAGGAAGGAATTCCTCCTGAT 67551174 Query 29079 CAACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTAC 29138 || |||||||| |||||||| ||||| |||||||||||| ||| || | || ||| Sbjct 67551173 CAGCAAAGACTGATCTTTGCTGGCAAGCAACTGGAAGATGGACGTACTTTGTCTGACTAC 67551114 Query 29139 AATATTCAGAAGGAATCTACTCTTCACATGGTGTT 29173 |||||||| ||||| ||||||||||| | ||||| Sbjct 67551113 AATATTCAAAAGGAGTCTACTCTTCATCTCGTGTT 67551079 >seq202 Length=171882078 Score = 111 bits (122), Expect = 1e-19 Identities = 154/216 (71%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 28958 AAAAATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACC 29017 ||||||||| || ||| | ||||| | ||||| || ||||| ||| ||| ||||| Sbjct 129945668 AAAAATGCAGATTTTCGTGAAAACCCTTACGGGGAAGACCATCACCCTCGAGGTTGAACC 129945727 Query 29018 CGCAGAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGA 29077 | | || | | | | || | ||| || || ||||| ||||| | || || Sbjct 129945728 CTCGGATATGATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGA 129945787 Query 29078 TCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTA 29137 ||| |||||||| |||||||| ||||| |||||||||||| ||| || | || || Sbjct 129945788 TCAGCAAAGACTGATCTTTGCTGGCAAGCAACTGGAAGATGGACGTACTTTGTCTGACTA 129945847 Query 29138 CAATATTCAGAAGGAATCTACTCTTCACATGGTGTT 29173 ||||||||| ||||| ||||||||||| | ||||| Sbjct 129945848 CAATATTCAAAAGGAGTCTACTCTTCATCTTGTGTT 129945883 >seq228 Length=146850525 Score = 86.0 bits (94), Expect = 5e-12 Identities = 148/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 28959 AAAATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCC 29018 |||||||| || || | ||||| | ||||| || ||||| ||| ||| |||||| Sbjct 76172171 AAAATGCAGATTTTTGTGAAAACCCTTACGGGGAAGACCATCACCCTCGAGGTTGAACCC 76172112 Query 29019 GCAGAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGAT 29078 | | ||| | | || | ||| || || || || ||||| | || | | Sbjct 76172111 TCGAATACGATAGAAAATGTAAAGGCCAAGATCCAGGAGAAGGAAGGAATTCCTCCTGCT 76172052 Query 29079 CAACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTAC 29138 | |||||||| |||||||| ||||| ||||||||||| ||| || | || ||| Sbjct 76172051 CTGCAAAGACTGATCTTTGCTGGCAAGCAACTGGAAGAAGGACGTACTTTGTCTGACTAC 76171992 Query 29139 AATATTCAGAAGGAATCTACTCTTCACATGGTGTT 29173 |||||||| ||||| ||||||||||| | ||||| Sbjct 76171991 AATATTCAAAAGGAGTCTACTCTTCATCTTGTGTT 76171957 >seq481 Length=152835861 Score = 84.2 bits (92), Expect = 2e-11 Identities = 142/206 (69%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 28959 AAAATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCC 29018 |||||||| || ||| | ||||| | | ||| || || || ||| || | |||||| Sbjct 1378116 AAAATGCAGATTTTCGTGAAAACCCTAAGGGGGAAGACTATCACCCTTGAGATTGAACCC 1378175 Query 29019 GCAGAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGAT 29078 |||| |||| | || | ||| || || ||||| ||||| | || ||| Sbjct 1378176 TCAGATACGGCAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGAT 1378235 Query 29079 CAACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTAC 29138 || |||||||| |||||||| ||| | ||||||||||| ||| || | || | | Sbjct 1378236 CAGCAAAGACTGATCTTTGCTGGCGAGCAACTGGAAGACGGACGTACTTTGTCTGACTGC 1378295 Query 29139 AATATTCAGAAGGAATCTACTCTTCA 29164 || ||||| ||||| |||||||||| Sbjct 1378296 AACATTCAAAAGGAGCCTACTCTTCA 1378321 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 428296320157655