Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Macaca_20fascicularis_20[refseq_20GCF_5F000364345.1_202013-06-12] 7,601 sequences; 2,946,843,737 total letters Query= NC_002188.1 Length=288539 Score E Sequences producing significant alignments: (Bits) Value seq93 109 1e-18 >seq93 Length=170955103 Score = 109 bits (120), Expect = 1e-18 Identities = 106/133 (80%), Gaps = 4/133 (3%) Strand=Plus/Plus Query 52057 GCATTTTTTGGAGCTCAGCTAAATTCTTTTATCCATGTTATTATGTACACTTATTATGGT 52116 |||||||||||||| ||| | ||||| ||||||||||| ||||||||| | || ||||| Sbjct 93938812 GCATTTTTTGGAGCCCAGATGAATTCCTTTATCCATGTGATTATGTACTCATACTATGGG 93938871 Query 52117 ATGGCCGCTTGTGGTCCTATG--TTCAGAAAGTATCTATGGTGGAAACGTTATCTTACTA 52174 | || || | ||| || ||| |||||||| ||||| ||||||||||| || || |||| Sbjct 93938872 TTAGCTGCATTTGG-CCCATGGATTCAGAAA-TATCTTTGGTGGAAACGATACCTGACTA 93938929 Query 52175 TAATGCAGTTGGT 52187 | |||| |||| Sbjct 93938930 TGTTGCAACTGGT 93938942 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 923109084764040