Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Macaca_20fascicularis_20[refseq_20GCF_5F000364345.1_202013-06-12] 7,601 sequences; 2,946,843,737 total letters Query= NC_002520.1 Length=232392 Score E Sequences producing significant alignments: (Bits) Value seq355 102 1e-16 seq202 102 1e-16 seq313 98.7 1e-15 seq398 87.8 3e-12 seq228 84.2 3e-11 >seq355 Length=112612857 Score = 102 bits (112), Expect = 1e-16 Identities = 107/138 (78%), Gaps = 2/138 (1%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTC-TTTAGATATATTATAATCTGA 146109 ||||| | |||||| || || | ||| | |||||| || ||| || ||||| || || || Sbjct 67551064 CCACCACGAAGTCTCAACACGAGATGAAGAGTAGACTCCTTTTGA-ATATTGTAGTCAGA 67551122 Query 146110 AAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGG 146169 | ||| | | ||| || | ||| || |||||||| |||| |||||||||||| ||||| Sbjct 67551123 CAAAGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGG 67551182 Query 146170 AATTCCTTCTTTATCTTG 146187 ||||||||| ||||| || Sbjct 67551183 AATTCCTTCCTTATCCTG 67551200 >seq202 Length=171882078 Score = 102 bits (112), Expect = 1e-16 Identities = 107/138 (78%), Gaps = 2/138 (1%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTC-TTTAGATATATTATAATCTGA 146109 ||||| | |||||| || || | ||| | |||||| || ||| || ||||| || || || Sbjct 129945898 CCACCACGAAGTCTCAACACAAGATGAAGAGTAGACTCCTTTTGA-ATATTGTAGTCAGA 129945840 Query 146110 AAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGG 146169 | ||| | | ||| || | ||| || |||||||| |||| |||||||||||| ||||| Sbjct 129945839 CAAAGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGG 129945780 Query 146170 AATTCCTTCTTTATCTTG 146187 ||||||||| ||||| || Sbjct 129945779 AATTCCTTCCTTATCCTG 129945762 >seq313 Length=132586672 Score = 98.7 bits (108), Expect = 1e-15 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 10437 GGATGTTATGCAAGATTAGCTCCCAGATCTGATTTAGCTCTAAATAAATTTATTGATATT 10496 || ||||||| |||| ||||||| || || | || ||| ||| | ||||||||| | Sbjct 63792484 GGGTGTTATGGAAGAGTAGCTCCAAGGTCAGGCTTGGCTGCAAAACACTTTATTGATGTA 63792543 Query 10497 GGAGCTGGAGTAATTGACGAAGATTATAGAGGAAATGTGGGAGTAATATTATTTAATCAT 10556 |||||||| || || || |||||||||||||||||||| || || || | |||||| | Sbjct 63792544 GGAGCTGGTGTCATAGATGAAGATTATAGAGGAAATGTTGGTGTTGTACTGTTTAATTTT 63792603 Query 10557 TCTAATGAAGATTTTATAATAAATAGAGGAGATAGAATATCTCAATTAATATGTGAAAAA 10616 || ||| | ||| | | || | || ||| |||| | || | || || ||| Sbjct 63792604 GGCAAAGAAAAGTTTGAAGTCAAAAAGGGTGATCGAATTGCACAGCTCATTTGCGAACGG 63792663 Query 10617 ATTTTATATCCTAAAAT 10633 ||||| ||||| |||| Sbjct 63792664 ATTTTTTATCCAGAAAT 63792680 >seq398 Length=96864807 Score = 87.8 bits (96), Expect = 3e-12 Identities = 106/139 (76%), Gaps = 4/139 (3%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTC-TTTAGATATATTATAATCTGA 146109 ||||| | |||||| || || | ||| | |||||| || ||| || ||||| || || || Sbjct 66392983 CCACCACGAAGTCTCAACACAAGATGAAGAGTAGACTCCTTTTGA-ATATTGTAGTCAGA 66392925 Query 146110 AAGAGTTC-TGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAG 146168 | ||| | ||| ||| || | ||| || |||||||| ||| ||||||||| | |||| Sbjct 66392924 CAAAGTCCATGC-ATCTTCCAGTTGCTTGCCAGCAAAGATCCCCCTTTGCTGAGCAGGAG 66392866 Query 146169 GAATTCCTTCTTTATCTTG 146187 |||||||||| ||||| || Sbjct 66392865 GAATTCCTTCCTTATCCTG 66392847 >seq228 Length=146850525 Score = 84.2 bits (92), Expect = 3e-11 Identities = 103/138 (75%), Gaps = 2/138 (1%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTC-TTTAGATATATTATAATCTGA 146109 ||||| | |||||| || || | ||| | |||||| || ||| || ||||| || || || Sbjct 76171942 CCACCACGAAGTCTCAACACAAGATGAAGAGTAGACTCCTTTTGA-ATATTGTAGTCAGA 76172000 Query 146110 AAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGG 146169 | ||| | | || || | ||| || |||||||| |||| ||||||| || | ||||| Sbjct 76172001 CAAAGTACGTCCTTCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCAGAGCAGGAGG 76172060 Query 146170 AATTCCTTCTTTATCTTG 146187 ||||||||| || || || Sbjct 76172061 AATTCCTTCCTTCTCCTG 76172078 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 743455755697920