Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Macaca_20fascicularis_20[refseq_20GCF_5F000364345.1_202013-06-12] 7,601 sequences; 2,946,843,737 total letters Query= NC_002665.1 Length=108873 Score E Sequences producing significant alignments: (Bits) Value seq202 1561 0.0 seq355 127 1e-24 >seq202 Length=171882078 Score = 1561 bits (1730), Expect = 0.0 Identities = 1370/1697 (81%), Gaps = 51/1697 (3%) Strand=Plus/Plus Query 107097 AGCTGGTTTGCAGCATCAGGTTACAGATGTCCATCCACAA------------GGGTCT-T 107143 |||| ||||| || ||||||||||||| |||||| || | |||| | | Sbjct 36818996 AGCTAGTTTGTAGGGTCAGGTTACAGATCTCCATCAACGAACCAGATGTAAGGGGTTTCT 36819055 Query 107144 AGGCAGGACTTGACTGAGGATATTTGTCTATAGAAGACATCTATCTTTACCATCACTCTG 107203 ||||||| ||| ||| |||||| ||||| | |||| | | | ||| |||||| | || Sbjct 36819056 AGGCAGGTCTTTACTAAGGATACTTGTCCAGGTAAGAACTATTT-TTTGCCATCAGTTTG 36819114 Query 107204 GAGTTGAACTTGATGTT-CTGG-----ATTAGTTTGTAATTAAAGGCATTTTGTTCTGTC 107257 || |||||||||||||| |||| || ||||||||| | || |||||||||||||| Sbjct 36819115 GAATTGAACTTGATGTTTCTGGGAATGATGAGTTTGTAACTGGAGTCATTTTGTTCTGTC 36819174 Query 107258 CAAGGATC---TCCTCCTCCACCTTGCCTGTGCCCAAACTCT-CCTGATCTCCCATCCCA 107313 ||||||| |||||||| |||| |||||| ||| ||| |||| ||| || | || Sbjct 36819175 CAAGGATTGTGTCCTCCTCTTCCTTCCCTGTGGTCAATCTCCACCTG-TCTACCCTTCCG 36819233 Query 107314 TGAAGATGGCTGGGTGGAAGAAGAAGCTTTGCCGGGGACATCATCTGTGGGCCCTGGGCT 107373 ||| |||| | ||||||| || || |||||| ||| | ||||||||||||||| Sbjct 36819234 TGACAATGGTTCAATGGAAGA-GA--CTCTGCCGGCAGCATTACTTGTGGGCCCTGGGCT 36819290 Query 107374 GCTATATGCTGCTGGCCGTTGTTTCTCTGAGACTTTCCCTCAGGTTTAAATGTGATGTAG 107433 ||||||||||||||||| |||| |||||| |||||| | ||||| || ||||| | Sbjct 36819291 GCTATATGCTGCTGGCCATTGTGGCTCTGAAACTTTCTTTAAGGTTGAAGTGTGACTCTG 36819350 Query 107434 ATTCCTTGGATCTGGAGTCCAGGGACTTCCAGAGTCAGCACTGTAGGGACATGTTGTACA 107493 | ||||| ||||||||||||||| || || || ||| |||||||| | || ||||| | Sbjct 36819351 ACCACTTGGGTCTGGAGTCCAGGGAATTTCAAAGCCAGTACTGTAGGAATATCTTGTATA 36819410 Query 107494 ATAGCCTGAAGCTGCCAGCAAAGAGATCCATCAACTGTTCTGGGATCACGCGAGGGGACC 107553 || |||||| |||||||||||||| || ||||||||||| |||||||| |||||||||| Sbjct 36819411 ATTCCCTGAAACTGCCAGCAAAGAGGTCTATCAACTGTTCAGGGATCACCCGAGGGGACC 36819470 Query 107554 AGGAAGCAGTGGTCCAGGCCCTCCTAGACAACCTGGAAGTGAAGAAAAAGCGGTCGCCTC 107613 ||||| ||| | ||||| | || | |||||||| || ||||| |||||| |||| Sbjct 36819471 CAGAAGCCGTGTTTCAGGCTATTCTGAATAACCTGGAGGTCAAGAAGAAGCGGGAGCCTT 36819530 Query 107614 TCACTGGCACCTATTACCTCAACATAACCAGAGACTGTGAGCGCTTCAAGGCCCAAAGGA 107673 | || | |||| | || ||| | | |||||||||||||| ||||||||||| |||||| Sbjct 36819531 TTACAGACACCCACTATCTCTCCCTCACCAGAGACTGTGAACGCTTCAAGGCGGAAAGGA 36819590 Query 107674 AGTTCATACAGTTCCCACTGAGTAAAGAAGAGCTAGACTTCCCCATTGCCTACTCGATGG 107733 |||||||||||||||||||||| ||||||||| | || ||||| ||||| |||||||||| Sbjct 36819591 AGTTCATACAGTTCCCACTGAGCAAAGAAGAGGTGGAGTTCCCTATTGCGTACTCGATGG 36819650 Query 107734 TGGTCCATGAGAAGATTGAAAACTTTGAACGGCTGCTGCGAGCCGTGTATGCCCCTCAGA 107793 || | |||||||||||||||||||||||| |||| |||||||| |||||||||||||||| Sbjct 36819651 TGATTCATGAGAAGATTGAAAACTTTGAAAGGCTACTGCGAGCTGTGTATGCCCCTCAGA 36819710 Query 107794 ACATATACTGTGTCCACGTGGATGTGAAGTCCCCAGAGACTTTCAAAGAGGCGGTCAAGG 107853 |||||||||| |||||||||||| |||||||||||| |||||||||||||||||||| | Sbjct 36819711 ACATATACTGCATCCACGTGGATGAGAAGTCCCCAGAAACTTTCAAAGAGGCGGTCAAAG 36819770 Query 107854 CCATTATTTCCTGCTTCCCCAATGTCTTCATGGCCAGTAAGTTGGTCCCGGTGGTTTATG 107913 | |||||||| |||||||| ||||||||||| ||||||||| |||| | |||| |||| | Sbjct 36819771 CAATTATTTCATGCTTCCCAAATGTCTTCATAGCCAGTAAGCTGGTTCGGGTGATTTACG 36819830 Query 107914 CCTCCTGGTCCAGAGTGCAAGCTGACCTGAACTGTATGGAAGACTTGCTCCAGAGCTCAG 107973 ||||||||||||| |||||||||||||| ||||| ||||||||||||||||||||||||| Sbjct 36819831 CCTCCTGGTCCAGGGTGCAAGCTGACCTCAACTGCATGGAAGACTTGCTCCAGAGCTCAG 36819890 Query 107974 TGCCATGGAAGTACTTACTGAATACATGCGGGACAGACTTCCCCATAAAGACCAATGCCG 108033 |||||||||| ||||| ||||||||||||||||| ||||| || |||||| |||||||| Sbjct 36819891 TGCCATGGAAATACTTCCTGAATACATGCGGGACGGACTTTCCTCTAAAGAGCAATGCCG 36819950 Query 108034 AGATGGTCCTGGCCCTCAAGATGTTGAAGGGTAAGAACAGTATGGAGTCTGAGGTACCTT 108093 ||||||||| ||| |||||||||||||| || | ||| || |||||| | ||||||||| Sbjct 36819951 AGATGGTCCAGGCTCTCAAGATGTTGAATGGGAGGAATAGCATGGAGACAGAGGTACCTC 36820010 Query 108094 CTGAGTCCaaaaaaaaTCGCTGGAAATACCGCTATGAG---GTGACAGACACACTGTACC 108150 | || |||| ||| |||||| |||| | || |||| ||| |||||| | ||| Sbjct 36820011 CCAAGCACAAACAAACCCGCTGGGAATATCACTTTGAGGTAGTGGGGGACACATTACACC 36820070 Query 108151 CTACCAGCAAGATGAAGGACCCTCCCCCTGATAATTTACCCATGTTCACAGGGAATGCCT 108210 |||| ||||| |||||| ||||||||| |||||||| | ||||| ||||||||||| | Sbjct 36820071 TAACCAACAAGAAGAAGGATCCTCCCCCTTATAATTTAACTATGTTTACAGGGAATGCGT 36820130 Query 108211 ATTTTGTGGCCTCTCGAGCCTTTGTCCAACATGTCTTAGACAACCCTAAATCCCAAAGAC 108270 || ||||||| || |||| |||||||||||||| || | ||||||||||||||| || Sbjct 36820131 ATATTGTGGCTTCCCGAGATTTTGTCCAACATGTTTTGAAGAACCCTAAATCCCAACAAC 36820190 Query 108271 TGGTTGAATGGGTCAAAGACACCTATAGCCCCGACGAACACCTCTGGGCCACCCTTCAGC 108330 || |||||||||| ||||||||||||||||| || ||||||||||||||||||||||||| Sbjct 36820191 TGATTGAATGGGTAAAAGACACCTATAGCCCTGATGAACACCTCTGGGCCACCCTTCAGC 36820250 Query 108331 GTGCTCCGTGGATGCCTGGCTCTGTTCCTAGCCACCCCAAGTATCACATCTCAGACATGA 108390 |||| | ||||||||||||||||||||||| |||||||||||| ||||||||||||||| Sbjct 36820251 GTGCACGGTGGATGCCTGGCTCTGTTCCTAACCACCCCAAGTACGACATCTCAGACATGA 36820310 Query 108391 CTGCCATCGCCAGGCTCGTCAAGTGGCAGTACCACGAGGGAGATGTCAGCATGGGGGCGC 108450 || | || |||||||| |||||||||||| | || |||||||| || | ||| || | Sbjct 36820311 CTTCTATTGCCAGGCTGGTCAAGTGGCAGGATCATGAGGGAGACATCGATAAGGGTGCTC 36820370 Query 108451 CTTATGCACCCTGCTCTGGAATCCATCGGAGGGCCATCTGCATTTACGGGGCCGGGGACC 108510 ||||||| || |||||||||||||| | | |||| |||| |||| ||||| |||||| Sbjct 36820371 CTTATGCCCCTTGCTCTGGAATCCACCAGCGGGCTGTCTGTGTTTATGGGGCTGGGGACT 36820430 Query 108511 TGTACTGGATTCTCCAGAACCATCACCTCTTGGCAAACAAGTTTGACCCGAGGGTGGATG 108570 || ||||||| || || ||||||||||| ||||| |||||||||||||| | ||| |||| Sbjct 36820431 TGCACTGGATGCTTCAAAACCATCACCTGTTGGCCAACAAGTTTGACCCAAAGGTAGATG 36820490 Query 108571 ATAACGTCCTGCAGTGCTTAGAAGAGTACCTACGTCATAAGGCCATCTATGGGACTGAAC 108630 |||| | || |||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 36820491 ATAATGCTCTTCAGTGCTTAGAAGAGTACCTACGTTATAAGGCCATCTATGGGACTGAAC 36820550 Query 108631 TTTGAG-----CT------GCA-------CTGT-GGGCCAGGGACTGTGCCAACATGCCC 108671 |||||| || ||| |||| |||| || | ||| | ||||||| | Sbjct 36820551 TTTGAGACACACTATGGGAGCATTGCTACCTGTGGGGCAAGAGCATGTACAAACATGCTC 36820610 Query 108672 AGGGCGTACTGGTACTGTGTGGGGTGGGGGACGAGGGCTGTGGAATCCATGGCATCCCCC 108731 || | | |||| || ||| ||||||| ||| |||||| || ||| | ||||||||| Sbjct 36820611 AGAACTTGCTGGGACAGTG-CGGGTGGGAGACCAGGGCTTTGCAATTCGTGGCATCCCTT 36820669 Query 108732 AGGGTCAGAGGGCTGCT 108748 ||| | || || ||||| Sbjct 36820670 AGGATAAGGGGTCTGCT 36820686 >seq355 Length=112612857 Score = 127 bits (140), Expect = 1e-24 Identities = 573/897 (64%), Gaps = 51/897 (6%) Strand=Plus/Plus Query 107688 CCACTGAGTAAAGAAGAGCTAGACTTCCCCATTGCCTACTCGATGGTGGTCCATGAGAAG 107747 || || |||||||||||| ||| || || || || || || || ||||| ||| | ||| Sbjct 87282115 CCCCTTAGTAAAGAAGAGGCAGAGTTTCCAATAGCATATTCTATAGTGGTTCATCACAAG 87282174 Query 107748 ATTGAAAACTTTGAACGGCTGCTGCGAGCCGTGTATGCCCCTCAGAACATATACTGTGTC 107807 ||||||| |||| |||||||| | ||| | ||| |||||||| | || || | Sbjct 87282175 ATTGAAATGCTTGACAGGCTGCTGAGGGCCATCTATATGCCTCAGAATTTCTATTGCATT 87282234 Query 107808 CACGTGGATGTGAAGTCCCCAGAGACTTTCAA---AGAGGCGGTCAAGGCCATTATTTCC 107864 || ||||| || ||| ||| || | | || || || | || ||| |||| Sbjct 87282235 CATGTGGACACAAAATCC---GAGGATTCCTATTTAGCTGCAGTGATGGGCATCGCTTCC 87282291 Query 107865 TGCTTCCCCAATGTCTTCATGGCCAGTAAGTTGGTCCCGGTGGTTTATGCCTCCTGGTCC 107924 || ||| |||||||| ||||||| |||| ||||||||||| || ||| Sbjct 87282292 TGTTTCAGTAATGTCTTTGTGGCCAGCCGATTGGAGAGTGTGGTTTATGCATCATGGAGT 87282351 Query 107925 AGAGTGCAAGCTGACCTGAACTGTATGGAAGACTTGCTCCA-GAGCTCAGTGCCA--TGG 107981 | || || |||||||| ||||| ||| | ||| ||| | | | ||||| | ||| Sbjct 87282352 CGGGTTCAGGCTGACCTCAACTGCATGAAGGAC---CTCTATGCAATGAGTGCAAACTGG 87282408 Query 107982 AAGTACTTACTGAATACATGCGGGACAGACTTCCCCATAAAGACCAATGCCGAGATGGTC 108041 |||||||| | ||| || || | || || || || || ||||| || || ||| Sbjct 87282409 AAGTACTTGATAAATCTTTGTGGTATGGATTTTCCTATTAAAACCAACCTAGAAATTGTC 87282468 Query 108042 CTGGCCCTCAAGATGTTGAAGGGTAAGAACAGTATGGAGTCTGA---GGTACCTTCTGAG 108098 | |||||| |||| | ||| | ||||| |||| | || | | || || | Sbjct 87282469 AGGAAGCTCAAGTTGTTAATGGGAGAAAACAGCCTGGAAACGGAGAGGATGCCATCCCA- 87282527 Query 108099 TCCaaaaaaaaTCGCTGGAAATACCGCTATGAGG---------------TGACAGACACA 108143 ||| || | | |||||| | || ||||||| ||||| ||||| Sbjct 87282528 --TAAAGAAGAAAGGTGGAAAAAGCGGTATGAGGTCGTTAATGGAAAGCTGACAAACACA 87282585 Query 108144 CTGTACCCTACCAGCAAGATGAAGGACCCTCCCCCTGATAATTTACCCATGTTCACAGGG 108203 | || ||| || | ||||| | || | ||| | || | || Sbjct 87282586 GGG------ACTGTCAAAAT---GCTTCCTCCGCTCGAAA---CACCTCTTTTTTCTGGC 87282633 Query 108204 AATGCCTATTTTGTGGCCTCTCGAGCCTTTGTCCAACATGTCTTAGACAACCCTAA-ATC 108262 | |||||| ||||||| | | | | | ||| |||| || | || || ||| Sbjct 87282634 AGTGCCTACTTTGTGGTCAGTAGGGAGTATGTGGGGTATGTACTACAGAATGAAAACATC 87282693 Query 108263 CCAAAGACTGGTTGAATGGGTCAAAGACACCTATAGCCCCGACGAACACCTCTGGGCCAC 108322 | ||| | | || |||| ||||||| || ||||| || || | ||||||||||| Sbjct 87282694 CAGAAG-TTTATGGAGTGGGCGCAAGACACATACAGCCCTGATGAGTATCTCTGGGCCAC 87282752 Query 108323 CCTTCAGCGTGCTCCGTGGA-TGCCTGGCTCTGTTCCTAGCCA-CCCCAAGTATCACATC 108380 | | ||| | | | | || | | || ||||| || || |||| || ||||| | | Sbjct 87282753 CATCCAGAG-GATTCCTGAAGTCCCGGGCTCACTTTCT-GCCAGCCATAAGTACGATTTG 87282810 Query 108381 TCAGACATGACTGCCATCGCCAGGCTCGTCAAGTGGCAGTACCACGAGGGAGATGTCAGC 108440 || |||||| || | |||||| | ||||||||||| ||| ||||| ||||| | Sbjct 87282811 TCTGACATGCAAGCAGTTGCCAGGTTTGTCAAGTGGCAATACTTTGAGGGTGATGTTTCC 87282870 Query 108441 ATGGGGGCGCCTTATGCACCCTGCTCTGGAATCCATCGGAGGGCCATCTGCATTTACGGG 108500 | ||| || || || | |||||| |||| |||| | | | | ||||||| || Sbjct 87282871 AAGGGTGCCCCCTACCCTCCCTGCGATGGAGTCCACGTGCGCTCGGTGTGCATTTTTGGA 87282930 Query 108501 GCCGGGGACCTGTACTGGATTCTCCAGAACCATCACCTCTTGGCAAACAAGTTTGAC 108557 || || ||| || ||||||| || | || || ||| | || || || ||||||||| Sbjct 87282931 GCTGGTGACTTGAACTGGATGCTGCGCAAACACCACTTGTTTGCCAATAAGTTTGAC 87282987 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 348236537357874