Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Macaca_20fascicularis_20[refseq_20GCF_5F000364345.1_202013-06-12] 7,601 sequences; 2,946,843,737 total letters Query= NC_003083.1 Length=118584 Score E Sequences producing significant alignments: (Bits) Value seq375 104 2e-17 seq293 91.5 1e-13 seq428 86.0 5e-12 seq202 86.0 5e-12 seq355 82.4 6e-11 >seq375 Length=80997621 Score = 104 bits (114), Expect = 2e-17 Identities = 152/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 18114 AGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCT 18173 || |||| ||| || || || ||||| || ||||||||||| | | || | |||| Sbjct 16482699 AGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCATCT 16482758 Query 18174 TCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCG 18233 |||| || ||||| ||| |||| || || || || || ||| | |||||||||||| Sbjct 16482759 TCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCGGGGGGAATGCCTTCCTTATCT 16482818 Query 18234 GCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTT 18293 |||| ||| || | | | | ||||||| |||||| |||| ||||||| | Sbjct 16482819 TGGATTTTGGCCTTCACATTTTCGATGGTGTCACTGGGCTCCACCTCAAGGGTGATGGTC 16482878 Query 18294 TTGCCGGTCAATGTTTTTACAAAAATTTGCATTTT 18328 |||||||||| || || || || || |||||||| Sbjct 16482879 TTGCCGGTCAGGGTCTTCACGAAGATCTGCATTTT 16482913 Score = 89.7 bits (98), Expect = 4e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 18114 AGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCT 18173 || |||| ||| || ||||| || || || ||||||||||| | | || | |||| Sbjct 16482243 AGGACCAGGTGCAGGGTTGACTCCTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCATCT 16482302 Query 18174 TCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCG 18233 |||| || ||||| ||| |||| || || || || || ||| | |||||| ||||| Sbjct 16482303 TCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCGGGGGGGATGCCTTCTTTATCT 16482362 Query 18234 GCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTT 18293 || | ||| || | | | | ||||||| |||||| || | ||||||| | Sbjct 16482363 TGGATCTTGGCCTTCACATTTTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTC 16482422 Query 18294 TTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 |||||||||| ||||| || || || ||||| Sbjct 16482423 TTGCCGGTCAGGGTTTTCACGAAGATCTGCAT 16482454 >seq293 Length=137757926 Score = 91.5 bits (100), Expect = 1e-13 Identities = 148/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 18114 AGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCT 18173 || || | ||| || || || ||||| || ||||||||||| | || || | |||| Sbjct 129296511 AGCACGAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCT 129296570 Query 18174 TCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCG 18233 |||| || || || ||| |||| || || || || || || | |||||||||||| Sbjct 129296571 TCCAGCTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCGGGAGGAATGCCTTCCTTATCT 129296630 Query 18234 GCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTT 18293 || | | |||||| | ||| ||||||| |||||| |||| ||||||| | Sbjct 129296631 TGGATCTTTGCCTTGACATTCTCAATGGTGTCACTGGGCTCAACCTCAAGGGTGATGGTC 129296690 Query 18294 TTGCCGGTCAATGTTTTTACAAAAATTTGCATT 18326 ||||| |||| || || || || || |||||| Sbjct 129296691 TTGCCAGTCAGGGTCTTCACGAAGATCTGCATT 129296723 Score = 89.7 bits (98), Expect = 4e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 18114 AGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCT 18173 || || | ||| || || || ||||| || ||||||||||| | || || | |||| Sbjct 129295827 AGCACGAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCT 129295886 Query 18174 TCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCG 18233 |||| || || || ||| |||| | || || || || || | ||| ||||| || Sbjct 129295887 TCCAGCTGCTTTCCAGCAAAGATCAACCTCTGCTGGTCAGGAGGGATGCCCTCCTTGTCC 129295946 Query 18234 GCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTT 18293 || | | |||||| | | ||| |||||||| ||||||| |||| ||||||| | Sbjct 129295947 TGGATCTTTGCCTTGACATTTTCAATAGTGTCACTGGGCTCGACCTCAAGGGTGATGGTC 129296006 Query 18294 TTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 ||||| |||| || || || || || ||||| Sbjct 129296007 TTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 129296038 Score = 86.0 bits (94), Expect = 5e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 18114 AGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCT 18173 || |||| ||| || || || ||||| || ||||||||||| | || || | |||| Sbjct 129295371 AGCACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCT 129295430 Query 18174 TCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCG 18233 |||| ||||| || ||| |||| | || || || || || | |||||||||||| Sbjct 129295431 TCCAGCTGTTTCCCAGCAAAGATCAACCTCTGCTGGTCAGGAGGGATGCCTTCCTTATCC 129295490 Query 18234 GCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTT 18293 || | | |||||| | ||| ||||| | |||||| || | ||||||| | Sbjct 129295491 TGGATCTTTGCCTTGACATTCTCAATGGTGTCGCTGGGCTCCACCTCGAGGGTGATGGTC 129295550 Query 18294 TTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 ||||| |||| || || || || || ||||| Sbjct 129295551 TTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 129295582 Score = 84.2 bits (92), Expect = 2e-11 Identities = 148/213 (69%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 18114 AGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCT 18173 || |||| ||| || || || ||||| || ||||||||||| | || || | |||| Sbjct 129296283 AGCACCAGGTGCAGGGTAGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGTCCATCT 129296342 Query 18174 TCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCG 18233 |||| ||||| || ||| |||| | || || || || || | ||||||||| || Sbjct 129296343 TCCAGCTGTTTCCCGGCAAAGATCAACCTCTGCTGGTCAGGAGGGATGCCTTCCTTGTCT 129296402 Query 18234 GCAATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCT 18292 || | |||| ||||| | | | ||||||| ||||||| || | ||||||| | Sbjct 129296403 TGGATCT-TTGCTTTGACGTTCTCGATGGTGTCACTGGGCTCGACCTCGAGGGTGATGGT 129296461 Query 18293 TTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 ||||| |||| || || || || || ||||| Sbjct 129296462 CTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 129296494 >seq428 Length=75711847 Score = 86.0 bits (94), Expect = 5e-12 Identities = 149/214 (70%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 18117 ACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCC 18176 |||| ||| || || || ||||| || ||||||||||| | | || | ||||||| Sbjct 71761760 ACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCTGAGAGAGTGCGGCCATCTTCC 71761819 Query 18177 AATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCA 18236 | |||||||| ||| | || || | || || || || | || ||||| || | Sbjct 71761820 AGCTGTTTGCCGGCAAATATCAGACGCTGCTGGTCAGGTGGGATACCCTCCTTGTCTTGA 71761879 Query 18237 ATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTT 18295 |||| | || ||||| | ||| ||||||| ||||||| || | ||||||| |||| Sbjct 71761880 ATTT-TGGCTTTGACATTCTCAATGGTGTCACTGGGCTCGACCTCGAGGGTGATGGTTTT 71761938 Query 18296 GCCGGTCAATGTTTTTACAAAAATTTGCATTTTT 18329 ||| || | || || ||||| || ||||| ||| Sbjct 71761939 GCCCGTGAGGGTCTTCACAAAGATCTGCATGTTT 71761972 >seq202 Length=171882078 Score = 86.0 bits (94), Expect = 5e-12 Identities = 167/246 (68%), Gaps = 2/246 (1%) Strand=Plus/Minus Query 18086 TTCTTTTTGTTATC--CTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGA 18143 ||| |||| ||| | | || || ||||| | || | ||||| || || || |||||| Sbjct 129945913 TTCCTTTTCTTAGCACCACCACGAAGTCTCAACACAAGATGAAGAGTAGACTCCTTTTGA 129945854 Query 18144 ATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTT 18203 || |||||||| | || || | |||||||| ||| ||||| ||| |||| |||||| Sbjct 129945853 ATATTGTAGTCAGACAAAGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTT 129945794 Query 18204 TGTTGATCCACGGGCACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTG 18263 || ||||| || | ||||||||||| || | ||| || | | | | | Sbjct 129945793 TGCTGATCAGGAGGAATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATCATA 129945734 Query 18264 TCACCGGGCTCGGTTTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGC 18323 || ||| || || | ||||||| | || || || | ||||| || ||||| ||| Sbjct 129945733 TCCGAGGGTTCAACCTCGAGGGTGATGGTCTTCCCCGTAAGGGTTTTCACGAAAATCTGC 129945674 Query 18324 ATTTTT 18329 |||||| Sbjct 129945673 ATTTTT 129945668 >seq355 Length=112612857 Score = 82.4 bits (90), Expect = 6e-11 Identities = 113/157 (72%), Gaps = 2/157 (1%) Strand=Plus/Plus Query 18078 AATACATTTTCTTTTTGTTATC--CTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATT 18135 || || | ||| |||| ||| | | || || ||||| | || | ||||| || || | Sbjct 67551041 AAGACTTCTTCCTTTTCTTAGCACCACCACGAAGTCTCAACACGAGATGAAGAGTAGACT 67551100 Query 18136 CTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGA 18195 | |||||||| |||||||| | || || | |||||||| ||| ||||| ||| ||| Sbjct 67551101 CCTTTTGAATATTGTAGTCAGACAAAGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAGA 67551160 Query 18196 TAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATC 18232 | |||||||| ||||| || | ||||||||||| Sbjct 67551161 TCAGTCTTTGCTGATCAGGAGGAATTCCTTCCTTATC 67551197 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 379308858638745