Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Macaca_20fascicularis_20[refseq_20GCF_5F000364345.1_202013-06-12] 7,601 sequences; 2,946,843,737 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq481 239 4e-58 seq228 114 1e-20 seq336 93.3 4e-14 >seq481 Length=152835861 Score = 239 bits (264), Expect = 4e-58 Identities = 611/918 (67%), Gaps = 38/918 (4%) Strand=Plus/Plus Query 11308 ATTCTCTTCTTTATTTGTAAACACCCCCATCTTTTGATATTCACTAACTCGTCGT-TCGA 11366 ||||||| | ||| | | ||| |||||| | ||||| || | |||| || | || | Sbjct 42596741 ATTCTCTGTTGGATTCGACACCACTCCCATCCTCTGATACTCCTTTACTC-TCTTCTCAA 42596799 Query 11367 AAAAATTAGTCTTACCTTCTAGTGATATATACTCCATAAAGCTAAAAGGATTATATACAT 11426 | || || ||||| | ||||| |||| |||||||||| ||| || || | ||| Sbjct 42596800 AGAAGTTCGTCTTTC-----AGTGAAATATTCTCCATAAAGTCAAATGGGTTCTCTACTC 42596854 Query 11427 TGAAGACTTTTTCACAACCTAACTCTGTTAATAATCTATCTGCGACGAATTCTATATACT 11486 |||| || || | |||| | || | | ||| ||||| || || || || || | Sbjct 42596855 TGAAAACCTTGCTAAAACCCAGTTCCGGCATG--TCTGTCTGCCACAAACTCAATGTATT 42596912 Query 11487 GAGACATTAAACAACAATTCATACCTATAAGATCCACCGGAATAGCAACTGTCAAAAACT 11546 | ||||| | |||||||| || || || | ||| || | || | || | || | Sbjct 42596913 GCTTCATTAGAGTGCAATTCATCCCAATGAGCTTCACAGGCAAGGCCTCAGTGAGGAATT 42596972 Query 11547 CCTTTTCTATATTAACCGCATCAATGATTATCGACGTTATAACTTCCTTAGATGGTGGAT 11606 ||| |||||| ||| |||| || ||| | ||| |||| ||||| | Sbjct 42596973 CCTGTTCTATCCGAACAGCATTGATAATTCTTTCTCTTACTCTCTCCTCCAATGGTTTGT 42597032 Query 11607 GTAATAAATGTTTAAACATTAAACACGCAAAATCACAATGTAAACCTTCGTCTCTACTTA 11666 ||| | || || ||||| | || ||||||||||| |||||||| || |||| ||| | Sbjct 42597033 GTACCAGGTGATTGAACATCAGGCAAGCAAAATCACAGTGTAAACCCTCATCTCCACTAA 42597092 Query 11667 TTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGtttttttATCCAAAATATAG 11726 | |||||||| ||||| || | || ||||||| ||||||||| || | ||| ||||| | Sbjct 42597093 TAAGTTCATTGGAAAAGGTGAGGCCAGGCATCAGTCCTCGTTTCTTGAGCCAGAATATCG 42597152 Query 11727 CAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATGCTACTACTCTTTCTC 11786 ||||| ||||||||||| || || ||| | || ||||| |||| || | ||| | Sbjct 42597153 ATGCAAAATAACCAGAAAAG---ATGCCTTCCGCTGCAGCAAAGACTACAACACGTTCCC 42597209 Query 11787 CATA------TACCTTGTTGCTAGATATCCATTTTCTGGCCCAATCAGCTTTCTTTTTTA 11840 |||| | | |||| | | ||||| | ||||||||| || ||||| || | Sbjct 42597210 CATAGGTAGCTGCTTTGTCCCCA---ATCCAGTGCAAGGCCCAATCTGCCTTCTTCTTGA 42597266 Query 11841 CGCATTCCATTGTTTCTATAGCGTTAAA--TAAATGCATTTTTTCTATATTATCTCTTAC 11898 | || ||| ||||| || || || || |||| | ||||| | |||| ||| Sbjct 42597267 CACAAGGCATCGTTTCAATGGCATTGAAGCGAAATTC--CCTTTCTTTGGGATCTTTTAT 42597324 Query 11899 ATATGTATCTATTAATAAACTATACATTTCTGAATGAATATTTTCCATAGCTATTTGAAA 11958 || || || || | |||||||||||| | ||||| || |||||||| || ||||| || Sbjct 42597325 GTAAGTGTCAATAAGGAAACTATACATTCCAGAATGTATGTTTTCCATGGCAATTTGGAA 42597384 Query 11959 TCCATAGAAACATCGTGCCTCTGAACACTGTACATCCACATAAAATCTTTCCGCTAAATT 12018 ||| ||||||| || || |||| ||| || || | ||| ||| | || || Sbjct 42597385 GCCACAGAAACAGCGGGCTTCTGTCACCTGAACTTCTTGGCTACATCGCTCCACCAAGTT 42597444 Query 12019 CTCATTTACAATACCATCACTAGATGCAAAAAATGCTAGTATATGTTTTATAAAGTATTT 12078 ||||||| || |||||||| | ||||| || | || | ||| |||||| ||| | Sbjct 42597445 TGCATTTACTATGCCATCACTTG-CGCAAAGAAAACCAGAACATGGGATATAAAATATCT 42597503 Query 12079 TTC----GTCTTTAGTTAATTTATCCCAATCATCTAAA--TCTTTTGATAAATCTACTTC 12132 || | ||| || ||| ||||| | | ||| || || || || || || Sbjct 42597504 CTCCTCGGGCTTCAG-GAAT---TCCCAGT--GCCAAATGTCCTTGGACGGGTCCACCTC 42597557 Query 12133 TTCAACGGTCCAAAAACTTGCCACTGATTGTTTATACATTTTCCAGATATCATGATACTT 12192 || ||||||| || || | | | |||||||| | |||||||||||| |||| Sbjct 42597558 CTCGGCGGTCCAGAAGGAAGCTTCCGCCTTCTTATACATCTGCCAGATATCATGGTACTC 42597617 Query 12193 AATAGGGAAAATAACGAA 12210 || ||||| || || || Sbjct 42597618 GATGGGGAAGATGACAAA 42597635 Score = 156 bits (172), Expect = 4e-33 Identities = 317/463 (68%), Gaps = 16/463 (3%) Strand=Plus/Minus Query 11630 CACGCAAAATCACAATGTAAACCTTCGTCTCTACTTATTAGTTCATTAGAAAATGTTAAT 11689 || ||||| | ||| |||||||| || || || || || |||||||| |||||||| | Sbjct 141149876 CAAGCAAAGTAACAGTGTAAACCCTCATCACTGCTAATAAGTTCATTGGAAAATGTGAGG 141149817 Query 11690 CCGGGCATCAATCCTCGtttttttATCCAAAATATAGCAGCAAATGAACCAGAAAAGAAT 11749 || ||||||| |||| |||| || | ||| ||||| ||||| |||||||||||||| Sbjct 141149816 CCAGGCATCAGTCCTTGTTTCTTGAGCCAGAATATCAGTGCAAAAGAACCAGAAAAGAAG 141149757 Query 11750 ATTCCCTCCACAGCTGCAAATGCTACTACTCTTTCTCCAT--ATA----CCTTGTTGCTA 11803 | | ||||| ||||| ||| | || | |||||||| || | ||||| | | Sbjct 141149756 GTGCTTTCCACTAGGGCAAAGGCTGCAACACGTTCTCCATGGGTAACGTCTTTGTTCCCA 141149697 Query 11804 GATATCCATTTTCTGGCCCAATCAGCTTTCTTTTTTACGCATTCCATTGTTTCTATAGCG 11863 ||||| | ||||| | || ||||| || || || ||||||| | || || Sbjct 141149696 ---ATCCAACACTAGACCCAAACTGCCTTCTTCTTGACACA-GGCATTGTTCCAATGGCA 141149641 Query 11864 TT--AAATAAATGCATTTTTTCTATATTATCTCTTACATATGTATCTATTAATAAACTAT 11921 || | | |||| | ||||| | |||||| ||| || ||| || || | | ||||| Sbjct 141149640 TTGAAGAGAAATTC--CCTTTCTTTGTTATCT-TTA-ATGTGTGTCAATAAGGAGACTAT 141149585 Query 11922 ACATTTCTGAATGAATATTTTCCATAGCTATTTGAAATCCATAGAAACATCGTGCCTCTG 11981 || || ||||| || ||||| |||| ||||| || |||| ||| || | |||| Sbjct 141149584 TTATGTCAGAATGTATGTTTTCTGTAGCAATTTGGAAGCCATGGAAGCAGAAGGTTTCTG 141149525 Query 11982 AACACTGTACATCCACATAAAATCTTTCCGCTAAATTCTCATTTACAATACCATCACTAG 12041 | ||| | || | |||| |||| | || || |||| ||| || ||||||| | Sbjct 141149524 TAATCTGAATTTCTTGAACAAATTGTTCCACCAAGTTTTCATCTACTATCCCATCACATG 141149465 Query 12042 ATGCAAAAAATGCTAGTATATGTTTTATAAAGTATTTTTCGTC 12084 |||||| || || || |||| |||||| ||| |||| || Sbjct 141149464 CTGCAAAGAAAGCCAGAATATAGGATATAAAATATCTTTCCTC 141149422 >seq228 Length=146850525 Score = 114 bits (126), Expect = 1e-20 Identities = 107/136 (79%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 11652 CTTCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGttttt 11711 |||| ||||| || || |||||||| ||||| || | ||| ||||| | |||| || | Sbjct 103367669 CTTCATCTCTGCTGATGAGTTCATTGGAAAAAGTGAGTCCTGGCATAAGACCTCTCTTCT 103367728 Query 11712 ttATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATG 11771 ||| ||| |||||||||||||| || || || ||||| ||||| || ||||| ||||| | Sbjct 103367729 TTAGCCAGAATATAGCAGCAAAAGATCCTGAGAAGAAAATTCCTTCTACAGCAGCAAAGG 103367788 Query 11772 CTACTACTCTTTCTCC 11787 | || |||||||| || Sbjct 103367789 CCACCACTCTTTCCCC 103367804 >seq336 Length=130733371 Score = 93.3 bits (102), Expect = 4e-14 Identities = 102/136 (75%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 37138 ACCTGAAAATCTCCAGATAATACTCTTCTTGTATATATATTGCTAGTATATGGTTCAATG 37197 |||||||| ||||| || || ||||| | ||||| || ||||| || || ||||||||| Sbjct 66505027 ACCTGAAATTCTCCTGACAAGACTCTGCGAGTATAGATGTTGCTGGTGTAAGGTTCAATG 66505086 Query 37198 GACTCATTATTACTTAATATTTGAGATGTAGATGCAGTAGGCATTGGTGCTATTAGAAGG 37257 ||||||||||| | | || |||| || || || |||||||| || || || || | Sbjct 66505087 GACTCATTATTCCCCAGGATCTGAGCAGTGGAAGCTGTAGGCATCGGGGCAATAAGTAAA 66505146 Query 37258 CTATTTCTCAATCCAT 37273 || ||||| | |||| Sbjct 66505147 CTGTTTCTTATACCAT 66505162 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468480284287440