Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Macaca_20fascicularis_20[refseq_20GCF_5F000364345.1_202013-06-12] 7,601 sequences; 2,946,843,737 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq481 325 6e-84 seq336 120 4e-22 seq323 120 4e-22 seq228 111 2e-19 seq313 105 1e-17 seq434 95.1 2e-14 seq246 86.0 9e-12 >seq481 Length=152835861 Score = 325 bits (360), Expect = 6e-84 Identities = 640/938 (68%), Gaps = 25/938 (3%) Strand=Plus/Plus Query 49613 TTTAAAAGTCAACATCTAGAGAAAAATGATTATCTTCTTGA---GACATAACTCCCATTT 49669 |||| |||||| |||| | | |||| ||| ||| | || |||| |||||||| Sbjct 42596713 TTTAGAAGTCAGCATCCAAGGTAAAAGAATTCTCTGTTGGATTCGACACCACTCCCATCC 42596772 Query 49670 TTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATTTT 49729 | || || || || | || || || || || || |||| | ||| ||||| | Sbjct 42596773 TCTGATACTCCTTTACTCTCTTCTCAAAGAAGTTCGTCTTTC-----AGTGAAATATTCT 42596827 Query 49730 CCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAATCA 49789 |||| || ||||| || || || | ||| || |||| |||| ||| | || Sbjct 42596828 CCATAAAGTCAAATGGGTTCTCTACTCTGAAAACCTTGCTAAAACCCAGTTCCGGCATG- 42596886 Query 49790 ATCTATCCGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGTT 49849 ||| || || ||||| || || ||| ||||| | |||||||| || || || | Sbjct 42596887 -TCTGTCTGCCACAAACTCAATGTATTGCTTCATTAGAGTGCAATTCATCCCAATGAGCT 42596945 Query 49850 TAACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGATACCGCATCTGTTATAATAG 49909 | || || | ||| |||| || ||||| ||||| || || |||| | || | Sbjct 42596946 TCACAGGCAAGGCCTCAGTGAGGAATTCCTGTTCTATCCGAACAGCATTGATAATTCTTT 42597005 Query 49910 ATCTAACGGTTTCTTCACTCGGTGGATGCAATAAATGTTTAAACATCAAACATGCGAAAT 49969 ||| || | || || ||| || | | || || ||||||| || || |||| Sbjct 42597006 CTCTTACTCTCTCCTCCAATGGTTTGTGTACCAGGTGATTGAACATCAGGCAAGCAAAAT 42597065 Query 49970 CGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTA 50029 | ||||| | |||||| |||| |||||| ||||| |||||||| ||||| || ||||| | Sbjct 42597066 CACAGTGTAAACCCTCATCTCCACTAATAAGTTCATTGGAAAAGGTGAGGCCAGGCATCA 42597125 Query 50030 GGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTTCTA 50089 | || || || || ||||| ||||| || ||||| | |||||||||| | ||||| Sbjct 42597126 GTCCTCGTTTCTTGAGCCAGAATATCGATGCAAAATAACCAGAAAAGATG---CCTTCCG 42597182 Query 50090 CTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGGC-GCT--GTCATGTATCCACTTTT 50146 |||| |||||| | |||| | || ||||| | || ||| ||| ||||| | Sbjct 42597183 CTGCAGCAAAGACTACAACACGTTCCCCATAGGTAGCTGCTTTGTCCCCAATCCAGTGCA 42597242 Query 50147 GAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGt 50206 |||||||| |||||||| || ||||||||||||||||| |||||||| ||| || | | Sbjct 42597243 AGGCCCAATCTGCCTTCTTCTTGACACAAGGCATCGTTTCAATGGCATTGAAGCGAAATT 42597302 Query 50207 ttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAA 50266 |||| || |||||| | ||||| || || | | |||||||||| | ||||| | Sbjct 42597303 CCCTTTCTTTGGGATCTTTTATGTAAGTGTCAATAAGGAAACTATACATTCCAGAATGTA 42597362 Query 50267 TGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCTG 50326 ||||||| ||||| || || || || ||||||| | || || || | ||| |||||| Sbjct 42597363 TGTTTTCCATGGCAATTTGGAAGCCACAGAAACAGCGGGCTTCTGTCACCTGAACTTCTT 42597422 Query 50327 TACAAAATCGTTCAGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCA 50386 | | |||| || | || ||| |||| ||||| || ||||| || ||||| || ||| Sbjct 42597423 GGCTACATCGCTCCACCAAGTTTGCATTTACTATGCCATCACTTGC-GCAAAGAAAACCA 42597481 Query 50387 ATACATGTTTTATAAAATGTTTTTCGTTGGGTGTTAGTTTATTCCAATCATTG----ATA 50442 ||||| |||||||| | | || | ||| | || ||||| || || || Sbjct 42597482 GAACATGGGATATAAAATATCTCTCCTCGGGCTTCAG-GAATTCC---CAGTGCCAAATG 42597537 Query 50443 TCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATA 50502 || || || || || || || | ||||| || || || || ||||| |||||||| Sbjct 42597538 TCCTTGGACGGGTCCACCTCCTCGGCGGTCCAGAAGGAAGCTTCCGCCTTCTTATACATC 42597597 Query 50503 TTCCAGATGTCATGATATTGGATTGGGAAAATAACAAA 50540 | |||||| ||||| || | ||| ||||| || ||||| Sbjct 42597598 TGCCAGATATCATGGTACTCGATGGGGAAGATGACAAA 42597635 Score = 199 bits (220), Expect = 6e-46 Identities = 315/445 (71%), Gaps = 10/445 (2%) Strand=Plus/Minus Query 49972 CAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGG 50031 ||||| | |||||| || || ||||| ||||| |||||||| ||||| || ||||| || Sbjct 141149864 CAGTGTAAACCCTCATCACTGCTAATAAGTTCATTGGAAAATGTGAGGCCAGGCATCAGT 141149805 Query 50032 CCACGCTTTTTAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTTCTACT 50091 || | || || ||||| ||||| ||||| || |||||||||||| | | ||| ||| Sbjct 141149804 CCTTGTTTCTTGAGCCAGAATATCAGTGCAAAAGAACCAGAAAAGAAGGTGCTTTCCACT 141149745 Query 50092 GCGGCAAAGGCAACAAGTCTCTCTCCA----TAACTGGCGCTGTCATGTATCC-ACTTTT 50146 ||||||||| ||| | |||||| |||| | | ||| |||| || | Sbjct 141149744 AGGGCAAAGGCTGCAACACGTTCTCCATGGGTAAC-GTCTTTGTTCCCAATCCAACACTA 141149686 Query 50147 GAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGt 50206 || ||||| | |||||||| || |||| |||||| ||| | |||||||| |||||| | | Sbjct 141149685 GA-CCCAAACTGCCTTCTTCTTGACAC-AGGCATTGTTCCAATGGCATTGAAGAGAAATT 141149628 Query 50207 ttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAA 50266 |||| || |||||||| || || || || | ||||||| || || ||||| | Sbjct 141149627 CCCTTTCTTTGTTATCTTTA--ATGTGTGTCAATAAGGAGACTATTTATGTCAGAATGTA 141149570 Query 50267 TGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCTG 50326 ||||||| | || || || || || | ||| || | || |||||||| | |||| Sbjct 141149569 TGTTTTCTGTAGCAATTTGGAAGCCATGGAAGCAGAAGGTTTCTGTAATCTGAATTTCTT 141149510 Query 50327 TACAAAATCGTTCAGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCA 50386 | |||| |||| | || ||||||| ||||| || |||| |||||||| || |||| Sbjct 141149509 GAACAAATTGTTCCACCAAGTTTTCATCTACTATCCCATCACATGCTGCAAAGAAAGCCA 141149450 Query 50387 ATACATGTTTTATAAAATGTTTTTC 50411 | || |||||||| | |||| Sbjct 141149449 GAATATAGGATATAAAATATCTTTC 141149425 >seq336 Length=130733371 Score = 120 bits (132), Expect = 4e-22 Identities = 129/171 (75%), Gaps = 0/171 (0%) Strand=Plus/Plus Query 78785 TCCATCCGTAGAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 78844 |||| |||||||| |||||||| || |||||| ||| | || || || || ||||||| Sbjct 66502180 TCCAGCCGTAGAAGTGCATACTAGTGAGTTTGCCATAGTTAGGCTCAGCAATGTGGATAT 66502239 Query 78845 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 78904 ||| |||||| |||||||| ||||| || || || || || ||||| || | | || | Sbjct 66502240 TCAAAGATTGGCTTTGATCAATGAAAGCACCTCTCTCAGCTGCCATCTTGAGAACGGTTT 66502299 Query 78905 TTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAA 78955 | || | |||||||| | ||||||||||| | |||| | || || |||| Sbjct 66502300 TCTGAGAGATTTCCCACACAGTTTTATAAAGTTGCTTCAGGTCATCAGGAA 66502350 Score = 114 bits (126), Expect = 2e-20 Identities = 108/138 (78%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 79935 CTTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCT 79994 || |||||||||||| |||||||| |||||||||||||| | || |||||||||| | Sbjct 66516546 CTCTACTCGTTTCATGAAGAGATCCGGAATCCAAAGAGCAAAGAAAAGATCTCTGGCACG 66516605 Query 79995 ATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCA 80054 |||||||| |||||||| ||||| || | ||| ||||| | | || || ||||||| Sbjct 66516606 CTGCTCCTCCTTTCCTGTGTTCTTCTTTAAATCAAGGAATTCAAAGATGTCTAAATGCCA 66516665 Query 80055 CGGTTCCAAGTATATGGC 80072 || |||| ||| || || Sbjct 66516666 AGGCTCCAGGTAAATAGC 66516683 Score = 104 bits (114), Expect = 3e-17 Identities = 105/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 79060 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATATGGTTCCACC 79119 || ||||||||||| ||||| ||||| ||||| || || || ||||| || ||||| | Sbjct 66505027 ACCTGAAATTCTCCTGACAAGACTCTGCGAGTATAGATGTTGCTGGTGTAAGGTTCAATG 66505086 Query 79120 GATTCATTATTTCCCAAAATTTGAGCAGTTGATGCCGTTGGCATAGGTGCCACCAATAAA 79179 || |||||||| |||| || |||||||| || || || ||||| || || | | |||| Sbjct 66505087 GACTCATTATTCCCCAGGATCTGAGCAGTGGAAGCTGTAGGCATCGGGGCAATAAGTAAA 66505146 Query 79180 CTATTTCTAAGACCGTA 79196 || ||||| | ||| || Sbjct 66505147 CTGTTTCTTATACCATA 66505163 >seq323 Length=111193037 Score = 120 bits (132), Expect = 4e-22 Identities = 101/124 (81%), Gaps = 0/124 (0%) Strand=Plus/Plus Query 49982 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 50041 |||| ||||| || || ||||| |||||||| ||||| || ||||| || || || || | Sbjct 100856187 CCTCATCTCTGCTGATAAGTTCATTGGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTCT 100856246 Query 50042 TAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGG 50101 | ||||| ||||| || ||||| || || ||||||||||| ||||| ||||||||||||| Sbjct 100856247 TGAGCCAGAATATCGATGCAAAAGAACCGGAAAAGAAGATGCCTTCCACTGCGGCAAAGG 100856306 Query 50102 CAAC 50105 | || Sbjct 100856307 CTAC 100856310 Score = 100 bits (110), Expect = 4e-16 Identities = 94/120 (78%), Gaps = 0/120 (0%) Strand=Plus/Plus Query 50220 ATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGC 50279 |||||| | ||||| || || | ||||||||||||||| ||||| |||||||| ||||| Sbjct 100858292 ATCTTTTATGTAAGTGTCAATAAGAAGACTATACATTTCAGAATGTATGTTTTCCATGGC 100858351 Query 50280 CATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCTGTACAAAATCGTTC 50339 || || || || |||||||| | || || |||||||| |||||| | |||||| || Sbjct 100858352 AATTTGGAAGCCATAGAAACAGCGGGCTTCTGTAATCTGAACTTCTTGGCTAAATCGCTC 100858411 >seq228 Length=146850525 Score = 111 bits (122), Expect = 2e-19 Identities = 105/134 (78%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 49984 TCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 50043 || ||||| || || ||||| |||||||| |||||||| ||||| || || | ||| || Sbjct 103367671 TCATCTCTGCTGATGAGTTCATTGGAAAAAGTGAGTCCTGGCATAAGACCTCTCTTCTTT 103367730 Query 50044 AGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGGCA 50103 ||||| ||||| | ||||| || || || ||||| ||||||||||| || |||||||| Sbjct 103367731 AGCCAGAATATAGCAGCAAAAGATCCTGAGAAGAAAATTCCTTCTACAGCAGCAAAGGCC 103367790 Query 50104 ACAAGTCTCTCTCC 50117 || | ||| || || Sbjct 103367791 ACCACTCTTTCCCC 103367804 >seq313 Length=132586672 Score = 105 bits (116), Expect = 1e-17 Identities = 177/255 (69%), Gaps = 6/255 (2%) Strand=Plus/Minus Query 47703 TCCAGTTGATCCAAACCCTTGAGCTCCTCTATCTGTACTATCTAGAGATTGTACTTCCTC 47762 |||||| || |||||||| | || || || || ||| | || ||| ||||| Sbjct 63792738 TCCAGTGGAACCAAACCCACCTGAACCCCTTTCGGTGTCATCCAAAGCTTGAACTTCT-- 63792681 Query 47763 CAGTTCTGGATAATATATACGTTGATAGATTAGCTGAGCTATTCTATCTCCCGTATTTAC 47822 | |||||||||| | || |||| | || ||||| || |||| ||| ||| | || || Sbjct 63792680 -ATTTCTGGATAAAAAATCCGTTCGCAAATGAGCTGTGCAATTCGATCACCCTTTTTGAC 63792622 Query 47823 ATTGAACGTACATTTTCCATTATTAATAAGAATGACTCCTATGTTTCCCCTATAATCTTC 47882 | ||| | ||| ||| ||||| || | || || | ||||| ||||||||||| Sbjct 63792621 TTCAAACTTTTCTTTGCCAAAATTAAACAGTACAACACCAACATTTCCTCTATAATCTTC 63792562 Query 47883 GTCTATTACACCACCTCCTATATCAAT---GCCTTTTAGTGACAGTCCAGACCTAGGAGC 47939 ||||| |||||| |||||| |||||| | |||| | || || ||||| ||||| Sbjct 63792561 ATCTATGACACCAGCTCCTACATCAATAAAGTGTTTTGCAGCCAAGCCTGACCTTGGAGC 63792502 Query 47940 TATTCTACCATAGCA 47954 || ||| ||||| || Sbjct 63792501 TACTCTTCCATAACA 63792487 >seq434 Length=59248254 Score = 95.1 bits (104), Expect = 2e-14 Identities = 177/255 (69%), Gaps = 9/255 (4%) Strand=Plus/Minus Query 47703 TCCAGTTGATCCAAACCCT--TGAGCTCCTCTATCTGTACTATCTAGAGATTGTACTTCC 47760 |||||| || ||||| ||| ||| | ||| | ||| ||| | || ||| ||||| Sbjct 53168802 TCCAGTAGAACCAAAACCTCCTGAACCCCTTTTGGTGTC--ATCCAAAGCTTGAACTTCT 53168745 Query 47761 TCCAGTTCTGGATAATATATACGTTGATAGATTAGCTGAGCTATTCTATCTCCCGTATTT 47820 || | ||||||||| | || |||| | | || ||||| || |||| ||| | ||||| Sbjct 53168744 TCTATTTCTGGATAGAACATCCGTTCACAAATGAGCTGTGCAATTCGATCACGT-TATTT 53168686 Query 47821 -ACATTGAACGTACATTTTCCATTATTAATAAGAATGACTCCTATGTTTCCCCTATAATC 47879 || | ||| | ||| ||| ||||| | | || || || ||||| |||||||| Sbjct 53168685 GACTTCAAACTTTTCTTTGCCAAAATTAAAGACTACAACACCAATATTTCCTCTATAATC 53168626 Query 47880 TTCGTCTATTACACCACCTCCTATAT---CAATGCCTTTTAGTGACAGTCCAGACCTAGG 47936 ||| ||| | |||||| |||||| || ||| | |||| | || ||||||| || Sbjct 53168625 TTCATCTGTGACACCAGCTCCTACATCTACAACGGGTTTTGCAGCCAAGCCAGACCGTGG 53168566 Query 47937 AGCTATTCTACCATA 47951 ||||| ||| ||||| Sbjct 53168565 AGCTACTCTTCCATA 53168551 >seq246 Length=133195287 Score = 86.0 bits (94), Expect = 9e-12 Identities = 143/207 (69%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 47703 TCCAGTTGATCCAAACCCTTGAGCTCCTCTATCTGTACTATCTAGAGATTGTACTTCCTC 47762 |||||| || ||||| || | || || || || ||| | || ||| ||||| || Sbjct 91140552 TCCAGTGGAACCAAAACCGCCTGAACCCCTTTCGGTGTCATCCAAAGCTTGAACTTCTTC 91140611 Query 47763 CAGTTCTGGATAATATATACGTTGATAGATTAGCTGAGCTATTCTATCTCCCGTATTTAC 47822 | |||||||||| | || |||| | || ||||| || |||| ||| | | | || || Sbjct 91140612 TATTTCTGGATAAAAAATCCGTTCGCAAATGAGCTGTGCAATTCGATCACACTTTTTGAC 91140671 Query 47823 ATTGAACGTACATTTTCCATTATTAATAAGAATGACTCCTATGTTTCCCCTATAATCTTC 47882 | ||| | ||| ||| |||| || | | || | ||||| ||||||||||| Sbjct 91140672 TTCAAACTTTTCTTTGCCAAAGTTAAACAGTACACCACCAACATTTCCTCTATAATCTTC 91140731 Query 47883 GTCTATTACACCACCTCCTATATCAAT 47909 ||||| |||||| |||||| |||||| Sbjct 91140732 ATCTATGACACCAGCTCCTACATCAAT 91140758 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718200555485640