Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Macaca_20fascicularis_20[refseq_20GCF_5F000364345.1_202013-06-12] 7,601 sequences; 2,946,843,737 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq481 230 2e-55 seq323 111 2e-19 >seq481 Length=152835861 Score = 230 bits (254), Expect = 2e-55 Identities = 521/775 (67%), Gaps = 15/775 (2%) Strand=Plus/Plus Query 13312 TAAAAATCAACATCTAATGAAAAAACATTATCGTCTTTG-TTAGAAATAACGCCCATTTT 13370 || || ||| |||| || | |||| ||| || | || | || || | || ||||| | Sbjct 42596715 TAGAAGTCAGCATCCAAGGTAAAAGAATTCTC-TGTTGGATTCGACACCACTCCCATCCT 42596773 Query 13371 TTGATATTCACTAACTCTTTTTTCAAAAAAGTTAGTTTTACCTTCCAGTGATATATTTTC 13430 ||||| || | ||||| || ||||| ||||| || ||| |||||| ||||| || Sbjct 42596774 CTGATACTCCTTTACTCTCTTCTCAAAGAAGTTCGT-----CTTTCAGTGAAATATTCTC 42596828 Query 13431 CATAAAATCGAATGGATTTGTTGACATAAACACTTTATCACAACCTAGTTCTAATAATAA 13490 |||||| || ||||| || | | || || || | |||| ||||| | Sbjct 42596829 CATAAAGTCAAATGGGTTCTCTACTCTGAAAACCTTGCTAAAACCCAGTTCCGGCATG-- 42596886 Query 13491 TCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAGTTT 13550 ||| || || | ||||||||| ||||| ||||| | |||||||| || || || || Sbjct 42596887 TCTGTCTGCCACAAACTCAATGTATTGCTTCATTAGAGTGCAATTCATCCCAATGAGCTT 42596946 Query 13551 TACAGGAATTATATTAGTTAAAAATTCTTTTTCTATAGACACAGCCTCGTTTATAATAA- 13609 ||||| | | ||| | ||||| | |||||| ||||| | | | || | Sbjct 42596947 CACAGGCAAGGCCTCAGTGAGGAATTCCTGTTCTATCCGAACAGCATTGATAATTCTTTC 42597006 Query 13610 TCTTAATAATGTCATTAGAAGGAGGATATTTTAGATGTTTAAAAATTAAACACGCAAAAT 13669 ||||| | | || | | || | | || || || || || | || ||||||| Sbjct 42597007 TCTTACTC-TCTCCTCCAATGGTTTGTGTACCAGGTGATTGAACATCAGGCAAGCAAAAT 42597065 Query 13670 CACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCA 13729 |||| || | |||||||||| |||||||||||| || ||||| || | || ||||||| Sbjct 42597066 CACAGTGTAAACCCTCATCTCCACTAATAAGTTCATTGGAAAAGGTGAGGCCAGGCATCA 42597125 Query 13730 ATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAA 13789 ||||||||| || | ||| ||||| | || || | || ||||||| | || || Sbjct 42597126 GTCCTCGTTTCTTGAGCCAGAATATCGATGCAAAATAACCAGAAAAGA---TGCCTTCCG 42597182 Query 13790 CTGCAGCAAACGCTATTAGTCGTTCTCCAAACGATGCTTTTTTGTTTGATATCCATTTTC 13849 |||||||||| ||| | ||||| ||| | | ||| ||||| ||||| | Sbjct 42597183 CTGCAGCAAAGACTACAACACGTTCCCCATAGGTAGCTGCTTTGTCCCCAATCCAGTGCA 42597242 Query 13850 TAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCGATTGCATTGAATAAATGTT 13909 ||||| || | || || || | | || ||| ||||| || |||||||| | || Sbjct 42597243 AGGCCCAATCTGCCTTCTTCTTGACACAAGGCATCGTTTCAATGGCATTGAAGCGAAATT 42597302 Query 13910 CCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTA 13969 || | ||||| | | | ||||| || |||||||| || ||||||||| |||| |||| Sbjct 42597303 CCCTTTCTTTGGGATCTTTTATGTAAGTGTCAATAAGGAAACTATACATTCCAGAATGTA 42597362 Query 13970 TGTTTTCTATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGACCATTGTACCTCCG 14029 ||||||| || || || || || ||| | ||||| | ||||||| | || || || Sbjct 42597363 TGTTTTCCATGGCAATTTGGAAGCCACAGAAACAGCGGGCTTCTGTCACCTGAACTTCTT 42597422 Query 14030 AGTAAAATCTTTCTGCCAAGTTTTCATTAACAATACCATCACTAGCTGCAAAAAA 14084 | | ||| || |||||||| |||| || || |||||||| || ||||| || Sbjct 42597423 GGCTACATCGCTCCACCAAGTTTGCATTTACTATGCCATCACTTGC-GCAAAGAA 42597476 Score = 141 bits (156), Expect = 9e-29 Identities = 293/431 (68%), Gaps = 5/431 (1%) Strand=Plus/Minus Query 13660 CACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAAT 13719 || ||||| | ||| || | |||||||| || ||||||||||| || |||||||| | Sbjct 141149876 CAAGCAAAGTAACAGTGTAAACCCTCATCACTGCTAATAAGTTCATTGGAAAATGTGAGG 141149817 Query 13720 CCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAAT 13779 || ||||||| |||| |||| || | ||| ||||| || || || || |||||||| Sbjct 141149816 CCAGGCATCAGTCCTTGTTTCTTGAGCCAGAATATCAGTGCAAAAGAACCAGAAAAGAAG 141149757 Query 13780 ATTCCCTCAACTGCAGCAAACGCTATTAGTCGTTCTCCAAACGATGCTTTTTTGTTTGAT 13839 | | || ||| ||||| ||| | ||||||||| | | | |||||| Sbjct 141149756 GTGCTTTCCACTAGGGCAAAGGCTGCAACACGTTCTCCATGGGTAACGTCTTTGTTCCCA 141149697 Query 13840 ATCCATTTTCTAG-CCCATTCAGAtttttttttAATAAAATCCATTGTTTCGATTGCATT 13898 ||||| |||| |||| | | || || || | | | ||||||| | || ||||| Sbjct 141149696 ATCCA-ACACTAGACCCAAACTGCCTTCTTCTTGA-CACAGGCATTGTTCCAATGGCATT 141149639 Query 13899 GAATAAATGTTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACAT 13958 ||| | | |||| | ||||| || | |||| ||| |||||||| | |||| || Sbjct 141149638 GAAGAGAAATTCCCTTTCTTTGTTATCTTTAATG--TGTGTCAATAAGGAGACTATTTAT 141149581 Query 13959 TTCAGAGTGTATGTTTTCTATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGACCA 14018 ||||| |||||||||||| |||| || || || |||| || || | ||||| Sbjct 141149580 GTCAGAATGTATGTTTTCTGTAGCAATTTGGAAGCCATGGAAGCAGAAGGTTTCTGTAAT 141149521 Query 14019 TTGTACCTCCGAGTAAAATCTTTCTGCCAAGTTTTCATTAACAATACCATCACTAGCTGC 14078 || | || |||| ||| |||||||||||| || || ||||||| ||||| Sbjct 141149520 CTGAATTTCTTGAACAAATTGTTCCACCAAGTTTTCATCTACTATCCCATCACATGCTGC 141149461 Query 14079 AAAAAATGCCA 14089 ||| || |||| Sbjct 141149460 AAAGAAAGCCA 141149450 >seq323 Length=111193037 Score = 111 bits (122), Expect = 2e-19 Identities = 106/136 (78%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 13682 CCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttt 13741 |||||||||| || |||||||| || |||||||| | || ||||||| ||||||||| | Sbjct 100856187 CCTCATCTCTGCTGATAAGTTCATTGGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTCT 100856246 Query 13742 ttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACG 13801 | | ||| ||||| | || || || ||||||||||| || || || ||||| ||||| | Sbjct 100856247 TGAGCCAGAATATCGATGCAAAAGAACCGGAAAAGAAGATGCCTTCCACTGCGGCAAAGG 100856306 Query 13802 CTATTAGTCGTTCTCC 13817 ||| | ||||| || Sbjct 100856307 CTACGACACGTTCACC 100856322 Score = 84.2 bits (92), Expect = 2e-11 Identities = 103/138 (75%), Gaps = 2/138 (1%) Strand=Plus/Plus Query 13312 TAAAAATCAACATCTAATGAAAAAACATTATCGTCTTTGT-TAGAAATAACGCCCATTTT 13370 || || ||| |||| || | |||| ||| || | || | | || || || ||||| | Sbjct 100854037 TAGAAGTCAGCATCCAAGGTAAAAGAATTCTC-TGTTGGACTTGACATCACTCCCATCCT 100854095 Query 13371 TTGATATTCACTAACTCTTTTTTCAAAAAAGTTAGTTTTACCTTCCAGTGATATATTTTC 13430 ||||| || | ||||| || ||||| |||||||| || ||||||||||| ||||| || Sbjct 100854096 CTGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTTCCTTCCAGTGAAATATTCTC 100854155 Query 13431 CATAAAATCGAATGGATT 13448 |||||| || ||||| || Sbjct 100854156 CATAAAGTCAAATGGGTT 100854173 Score = 82.4 bits (90), Expect = 7e-11 Identities = 69/85 (81%), Gaps = 0/85 (0%) Strand=Plus/Plus Query 13930 ATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCTATAGCTATCTGA 13989 ||||| || |||||||| | |||||||||||||| ||||||||||| || || || || Sbjct 100858299 ATGTAAGTGTCAATAAGAAGACTATACATTTCAGAATGTATGTTTTCCATGGCAATTTGG 100858358 Query 13990 AAACCATAAAAACATCTAGCTTCTG 14014 || ||||| ||||| | ||||||| Sbjct 100858359 AAGCCATAGAAACAGCGGGCTTCTG 100858383 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478543328081640