Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Macaca_20fascicularis_20[refseq_20GCF_5F000364345.1_202013-06-12] 7,601 sequences; 2,946,843,737 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq481 334 1e-86 seq228 116 5e-21 seq336 114 2e-20 seq323 114 2e-20 seq313 96.9 5e-15 seq434 89.7 7e-13 >seq481 Length=152835861 Score = 334 bits (370), Expect = 1e-86 Identities = 641/938 (68%), Gaps = 25/938 (3%) Strand=Plus/Plus Query 41718 TTTAAAAGTCAACATCTAAAGAAAAATGATTGTCTTCTTGA---GACATAACTCCCATTT 41774 |||| |||||| |||| || | |||| ||| ||| | || |||| |||||||| Sbjct 42596713 TTTAGAAGTCAGCATCCAAGGTAAAAGAATTCTCTGTTGGATTCGACACCACTCCCATCC 42596772 Query 41775 TTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTCTTTCCTTCCAATGATATATTTT 41834 | || || || || | || || || || || ||||||| | ||| ||||| | Sbjct 42596773 TCTGATACTCCTTTACTCTCTTCTCAAAGAAGTTCGTCTTTC-----AGTGAAATATTCT 42596827 Query 41835 CCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAATCA 41894 |||| || ||||| || || || | ||| || |||| |||| ||| | || Sbjct 42596828 CCATAAAGTCAAATGGGTTCTCTACTCTGAAAACCTTGCTAAAACCCAGTTCCGGCATG- 42596886 Query 41895 ATCTATCTGCGATGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGTT 41954 ||| ||||| | || || || ||| ||||| | |||||||| || || || | Sbjct 42596887 -TCTGTCTGCCACAAACTCAATGTATTGCTTCATTAGAGTGCAATTCATCCCAATGAGCT 42596945 Query 41955 TAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAATAG 42014 | || || | ||| |||| || ||||| ||||| || || || | | || | Sbjct 42596946 TCACAGGCAAGGCCTCAGTGAGGAATTCCTGTTCTATCCGAACAGCATTGATAATTCTTT 42597005 Query 42015 ATCTTACTGTTTCTTCACTCGGTGGATACAATAAATGTTTAAACATCAAACATGCGAAAT 42074 ||||||| | || || ||| | | | || || ||||||| || || |||| Sbjct 42597006 CTCTTACTCTCTCCTCCAATGGTTTGTGTACCAGGTGATTGAACATCAGGCAAGCAAAAT 42597065 Query 42075 CGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTA 42134 | ||||| | ||||||||||| |||||| | ||| |||||||| ||||| || ||||| | Sbjct 42597066 CACAGTGTAAACCCTCATCTCCACTAATAAGTTCATTGGAAAAGGTGAGGCCAGGCATCA 42597125 Query 42135 GGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCTA 42194 | || || || || ||||| ||||| || ||||| | |||||||||| | ||||| Sbjct 42597126 GTCCTCGTTTCTTGAGCCAGAATATCGATGCAAAATAACCAGAAAAGATG---CCTTCCG 42597182 Query 42195 CTGCCGCAAAGGCAATAAGTCTCTCTCCATA---ACCGGCACTGTCATGTATCCACTTTT 42251 |||| |||||| | | || | || ||||| | | || |||| ||||| | Sbjct 42597183 CTGCAGCAAAGACTACAACACGTTCCCCATAGGTAGCTGCTTTGTCCCCAATCCAGTGCA 42597242 Query 42252 GAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGt 42311 |||||||| |||||||| || ||||||||||||||||| |||||||| ||| || | | Sbjct 42597243 AGGCCCAATCTGCCTTCTTCTTGACACAAGGCATCGTTTCAATGGCATTGAAGCGAAATT 42597302 Query 42312 ttttttCATTACTATCTTTAACATATGTATCGATCAAAAGACTATACATTTCTGAATGAA 42371 |||| || |||||| | || || || || | | |||||||||| | ||||| | Sbjct 42597303 CCCTTTCTTTGGGATCTTTTATGTAAGTGTCAATAAGGAAACTATACATTCCAGAATGTA 42597362 Query 42372 TGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTCGGTAACCTGTACTTCTG 42431 ||||||| ||||| || || || || ||||||| | ||| || || ||||| |||||| Sbjct 42597363 TGTTTTCCATGGCAATTTGGAAGCCACAGAAACAGCGGGCTTCTGTCACCTGAACTTCTT 42597422 Query 42432 TACAAAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCACTGGCTGCAAAAAACGCCA 42491 | | |||| || | || ||| | || ||||| || ||||| || ||||| || ||| Sbjct 42597423 GGCTACATCGCTCCACCAAGTTTGCATTTACTATGCCATCACTTGC-GCAAAGAAAACCA 42597481 Query 42492 ATACATGTTTTATAAAATATTTTTCGTCCGGTGTTAATTTATTCCAATCATTG----ATA 42547 ||||| |||||||||| | || | ||| || | ||||| || || || Sbjct 42597482 GAACATGGGATATAAAATATCTCTCCT-CGGGCTTCAGGAATTCC---CAGTGCCAAATG 42597537 Query 42548 TCTTTAGATATATCTACTTCTTCTACCGTCCAAAATGATGCTTCTGCCTTTTTATACATA 42607 || || || || || || || | ||||| || || ||||| ||||| |||||||| Sbjct 42597538 TCCTTGGACGGGTCCACCTCCTCGGCGGTCCAGAAGGAAGCTTCCGCCTTCTTATACATC 42597597 Query 42608 TTCCAGATATCATGATATTGAATTGGGAAAATAACAAA 42645 | |||||||||||| || | || ||||| || ||||| Sbjct 42597598 TGCCAGATATCATGGTACTCGATGGGGAAGATGACAAA 42597635 Score = 197 bits (218), Expect = 2e-45 Identities = 381/554 (69%), Gaps = 16/554 (3%) Strand=Plus/Minus Query 42077 CAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGG 42136 ||||| | ||||||||| || ||||| | ||| |||||||| ||||| || ||||| || Sbjct 141149864 CAGTGTAAACCCTCATCACTGCTAATAAGTTCATTGGAAAATGTGAGGCCAGGCATCAGT 141149805 Query 42137 CCACGCTTTTTAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCTACT 42196 || | || || ||||| ||||| ||||| || |||||||||||| | | ||| ||| Sbjct 141149804 CCTTGTTTCTTGAGCCAGAATATCAGTGCAAAAGAACCAGAAAAGAAGGTGCTTTCCACT 141149745 Query 42197 GCCGCAAAGGCAATAAGTCTCTCTCCAT---AACCGGCACTGTCATGTATCC-ACTTTTG 42252 |||||||| || | ||||||| | || | ||| |||| || | | Sbjct 141149744 AGGGCAAAGGCTGCAACACGTTCTCCATGGGTAACGTCTTTGTTCCCAATCCAACACTAG 141149685 Query 42253 AGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGtt 42312 | ||||| | |||||||| || |||| |||||| ||| | |||||||| |||||| | | Sbjct 141149684 A-CCCAAACTGCCTTCTTCTTGACAC-AGGCATTGTTCCAATGGCATTGAAGAGAAATTC 141149627 Query 42313 tttttCATTACTATCTTTAACATATGTATCGATCAAAAGACTATACATTTCTGAATGAAT 42372 |||| || |||||||| || ||| || || | ||||||| || || ||||| || Sbjct 141149626 CCTTTCTTTGTTATCTTTA--ATGTGTGTCAATAAGGAGACTATTTATGTCAGAATGTAT 141149569 Query 42373 GTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTCGGTAACCTGTACTTCTGT 42432 |||||| | || || || || || | ||| || || || |||| ||| | |||| Sbjct 141149568 GTTTTCTGTAGCAATTTGGAAGCCATGGAAGCAGAAGGTTTCTGTAATCTGAATTTCTTG 141149509 Query 42433 ACAAAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCACTGGCTGCAAAAAACGCCAA 42492 | |||| |||| | || ||||| | ||||| || |||| |||||||| || |||| Sbjct 141149508 AACAAATTGTTCCACCAAGTTTTCATCTACTATCCCATCACATGCTGCAAAGAAAGCCAG 141149449 Query 42493 TACATGTTTTATAAAATATTTTTCGTCCGGTGTTAATTTATTCCAATCATTG----ATAT 42548 | || |||||||||| |||| || || || | |||| || || || | Sbjct 141149448 AATATAGGATATAAAATATCTTTCCTCAGG-CTTCAGGGCTTCC---CAGTGCCAAATGT 141149393 Query 42549 CTTTAGATATATCTACTTCTTCTACCGTCCAAAATGATGCTTCTGCCTTTTTATACATAT 42608 | || || | | || || | || |||| || || | ||| | || |||||| | | Sbjct 141149392 CCTTGGACAGGTTCACCTCCTGGGCCATCCAGAAAGAAACCTCTACTTTCTTATACGTTT 141149333 Query 42609 TCCAGATATCATGA 42622 |||| ||||||||| Sbjct 141149332 TCCAAATATCATGA 141149319 >seq228 Length=146850525 Score = 116 bits (128), Expect = 5e-21 Identities = 97/119 (82%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 42089 TCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 42148 |||||||| || || | ||| |||||||| |||||||| ||||| || || | ||| || Sbjct 103367671 TCATCTCTGCTGATGAGTTCATTGGAAAAAGTGAGTCCTGGCATAAGACCTCTCTTCTTT 103367730 Query 42149 AGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGGC 42207 ||||| ||||||| ||||| ||||| || ||||| ||||||||||| || |||||||| Sbjct 103367731 AGCCAGAATATAGCAGCAAAAGATCCTGAGAAGAAAATTCCTTCTACAGCAGCAAAGGC 103367789 >seq336 Length=130733371 Score = 114 bits (126), Expect = 2e-20 Identities = 128/171 (75%), Gaps = 0/171 (0%) Strand=Plus/Plus Query 70868 TCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAGCTAGGATCGGCTATGTGAATAT 70927 |||| ||||| || |||||||| || |||||| |||| |||| || || ||||| |||| Sbjct 66502180 TCCAGCCGTAGAAGTGCATACTAGTGAGTTTGCCATAGTTAGGCTCAGCAATGTGGATAT 66502239 Query 70928 TCATCGACTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 70987 ||| || || |||||||| ||||| || || || || || ||||| || | | || | Sbjct 66502240 TCAAAGATTGGCTTTGATCAATGAAAGCACCTCTCTCAGCTGCCATCTTGAGAACGGTTT 66502299 Query 70988 TTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAA 71038 | || | |||||||| | ||||||||||| | |||| | || || |||| Sbjct 66502300 TCTGAGAGATTTCCCACACAGTTTTATAAAGTTGCTTCAGGTCATCAGGAA 66502350 Score = 113 bits (124), Expect = 6e-20 Identities = 106/135 (79%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 72021 TACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATG 72080 |||||||||||| |||||||| |||||||||||||| | || |||||||||| | || Sbjct 66516549 TACTCGTTTCATGAAGAGATCCGGAATCCAAAGAGCAAAGAAAAGATCTCTGGCACGCTG 66516608 Query 72081 CTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGG 72140 |||||| |||||||| ||||| || | ||| ||||| | | || || ||||||| || Sbjct 66516609 CTCCTCCTTTCCTGTGTTCTTCTTTAAATCAAGGAATTCAAAGATGTCTAAATGCCAAGG 66516668 Query 72141 TTCCAAGTATATGGC 72155 |||| ||| || || Sbjct 66516669 CTCCAGGTAAATAGC 66516683 Score = 105 bits (116), Expect = 9e-18 Identities = 105/136 (77%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 71143 ACTTGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATACGGTTCCACT 71202 || ||||||||||| ||||| ||||| ||||| || || || ||||| || ||||| | Sbjct 66505027 ACCTGAAATTCTCCTGACAAGACTCTGCGAGTATAGATGTTGCTGGTGTAAGGTTCAATG 66505086 Query 71203 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAGA 71262 ||||||||||| |||| || |||||||| || || || ||||| || || | | || | Sbjct 66505087 GACTCATTATTCCCCAGGATCTGAGCAGTGGAAGCTGTAGGCATCGGGGCAATAAGTAAA 66505146 Query 71263 CTATTTCTAAGACCAT 71278 || ||||| | ||||| Sbjct 66505147 CTGTTTCTTATACCAT 66505162 >seq323 Length=111193037 Score = 114 bits (126), Expect = 2e-20 Identities = 98/121 (81%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 42087 CCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 42146 |||||||||| || || | ||| |||||||| ||||| || ||||| || || || || | Sbjct 100856187 CCTCATCTCTGCTGATAAGTTCATTGGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTCT 100856246 Query 42147 TAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGG 42206 | ||||| ||||| || ||||| || || ||||||||||| ||||| ||||| ||||||| Sbjct 100856247 TGAGCCAGAATATCGATGCAAAAGAACCGGAAAAGAAGATGCCTTCCACTGCGGCAAAGG 100856306 Query 42207 C 42207 | Sbjct 100856307 C 100856307 Score = 95.1 bits (104), Expect = 2e-14 Identities = 93/120 (78%), Gaps = 0/120 (0%) Strand=Plus/Plus Query 42325 ATCTTTAACATATGTATCGATCAAAAGACTATACATTTCTGAATGAATGTTTTCAATGGC 42384 |||||| | || || || || | ||||||||||||||| ||||| |||||||| ||||| Sbjct 100858292 ATCTTTTATGTAAGTGTCAATAAGAAGACTATACATTTCAGAATGTATGTTTTCCATGGC 100858351 Query 42385 CATCTGAAATCCGTAGAAACATCTGGCCTCGGTAACCTGTACTTCTGTACAAAATCGTTC 42444 || || || || |||||||| | ||| || |||| ||| |||||| | |||||| || Sbjct 100858352 AATTTGGAAGCCATAGAAACAGCGGGCTTCTGTAATCTGAACTTCTTGGCTAAATCGCTC 100858411 Score = 87.8 bits (96), Expect = 2e-12 Identities = 118/163 (72%), Gaps = 6/163 (4%) Strand=Plus/Plus Query 41697 AAATATCGGCATTTAT---GTTTCTTTAAAAGTCAACATCTAAAGAAAAATGATTGTCTT 41753 ||||| ||||| | | ||| |||| |||||| |||| || | |||| ||| ||| Sbjct 100854011 AAATAAGGGCATATCTTCAGTTCATTTAGAAGTCAGCATCCAAGGTAAAAGAATTCTCTG 100854070 Query 41754 CTTGA---GACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAG 41810 | || ||||| |||||||| | || || || || || | || || || || |||| Sbjct 100854071 TTGGACTTGACATCACTCCCATCCTCTGATACTCGCCTACTCTCTTCTCAAAGAAGTTAG 100854130 Query 41811 TCTTTCCTTCCAATGATATATTTTCCATGAAATCAAACGGATT 41853 |||||||||||| ||| ||||| ||||| || ||||| || || Sbjct 100854131 TCTTTCCTTCCAGTGAAATATTCTCCATAAAGTCAAATGGGTT 100854173 >seq313 Length=132586672 Score = 96.9 bits (106), Expect = 5e-15 Identities = 175/255 (69%), Gaps = 6/255 (2%) Strand=Plus/Minus Query 39798 TCCAGTTGATCCAAATCCTTGAGCTCCTCTATCTGTACTATCTAGAGATTGTACTTCTTC 39857 |||||| || ||||| || | || || || || ||| | || ||| |||||| Sbjct 63792738 TCCAGTGGAACCAAACCCACCTGAACCCCTTTCGGTGTCATCCAAAGCTTGAACTTCT-- 63792681 Query 39858 CAGTTCTGGATAATATATACGTTGATAGATTAGCTGAGCTATTCTATCTCCCGTATTTAC 39917 | |||||||||| | || |||| | || ||||| || |||| ||| ||| | || || Sbjct 63792680 -ATTTCTGGATAAAAAATCCGTTCGCAAATGAGCTGTGCAATTCGATCACCCTTTTTGAC 63792622 Query 39918 ATTGAAAGTACATTTTCCATTATTAATAAGAATGACTCCTATGTTTCCCCTATAATCTTC 39977 | || | ||| ||| ||||| || | || || | ||||| ||||||||||| Sbjct 63792621 TTCAAACTTTTCTTTGCCAAAATTAAACAGTACAACACCAACATTTCCTCTATAATCTTC 63792562 Query 39978 GTCTATTACACCGCCTCCTATATCAATA---CCTTTTAGGGACAGACCAGACCTAGGAGC 40034 ||||| ||||| |||||| ||||||| |||| | || || ||||| ||||| Sbjct 63792561 ATCTATGACACCAGCTCCTACATCAATAAAGTGTTTTGCAGCCAAGCCTGACCTTGGAGC 63792502 Query 40035 TATTCTACCATAGCA 40049 || ||| ||||| || Sbjct 63792501 TACTCTTCCATAACA 63792487 >seq434 Length=59248254 Score = 89.7 bits (98), Expect = 7e-13 Identities = 176/255 (69%), Gaps = 9/255 (4%) Strand=Plus/Minus Query 39798 TCCAGTTGATCCAAATCCT--TGAGCTCCTCTATCTGTACTATCTAGAGATTGTACTTCT 39855 |||||| || ||||| ||| ||| | ||| | ||| ||| | || ||| |||||| Sbjct 53168802 TCCAGTAGAACCAAAACCTCCTGAACCCCTTTTGGTGTC--ATCCAAAGCTTGAACTTCT 53168745 Query 39856 TCCAGTTCTGGATAATATATACGTTGATAGATTAGCTGAGCTATTCTATCTCCCGTATTT 39915 || | ||||||||| | || |||| | | || ||||| || |||| ||| | ||||| Sbjct 53168744 TCTATTTCTGGATAGAACATCCGTTCACAAATGAGCTGTGCAATTCGATCACGT-TATTT 53168686 Query 39916 ACATTGAAAGTACATTTT-CCATTATTAATAAGAATGACTCCTATGTTTCCCCTATAATC 39974 || ||| | ||| ||| ||||| | | || || || ||||| |||||||| Sbjct 53168685 GACTTCAAACTTTTCTTTGCCAAAATTAAAGACTACAACACCAATATTTCCTCTATAATC 53168626 Query 39975 TTCGTCTATTACACCGCCTCCTATATCAATACC---TTTTAGGGACAGACCAGACCTAGG 40031 ||| ||| | ||||| |||||| ||| | | | |||| | || ||||||| || Sbjct 53168625 TTCATCTGTGACACCAGCTCCTACATCTACAACGGGTTTTGCAGCCAAGCCAGACCGTGG 53168566 Query 40032 AGCTATTCTACCATA 40046 ||||| ||| ||||| Sbjct 53168565 AGCTACTCTTCCATA 53168551 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671075433386760