Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Macaca_20fascicularis_20[refseq_20GCF_5F000364345.1_202013-06-12] 7,601 sequences; 2,946,843,737 total letters Query= NC_004690.1 Length=113220 Score E Sequences producing significant alignments: (Bits) Value seq202 89.7 4e-13 seq274 86.0 5e-12 seq228 82.4 6e-11 >seq202 Length=171882078 Score = 89.7 bits (98), Expect = 4e-13 Identities = 159/232 (69%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 ||||| | | ||| || || | |||||| || || || ||||| || ||||| || Sbjct 129945898 CCACCACGAAGTCTCAACACAAGATGAAGAGTAGACTCCTTTTGAATATTGTAGTCAGAC 129945839 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 | | | | | ||||| | ||| |||||||| | |||| | ||| || || ||| Sbjct 129945838 AAAGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGGA 129945779 Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316 |||||||| || || || ||| ||||||| ||||||| |||| ||| || Sbjct 129945778 ATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATCATATCCGAGGGTTCAACC 129945719 Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATTTG 15368 || | ||| ||||| || || || || ||||| || ||||| ||||| |||| Sbjct 129945718 TCGAGGGTGATGGTCTTCCCCGTAAGGGTTTTCACGAAAATCTGCATTTTTG 129945667 >seq274 Length=96509753 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 11/227 (5%) Strand=Plus/Minus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 ||||| | | ||| || || | |||||| || || || ||||| |||||||| || Sbjct 68626131 CCACCACGAAGTCTCAACACAAGATGAAGAGTAGACTCCTTTTGAATGTTGTAGTC---- 68626076 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 ||| | ||||| ||||| |||||||| | |||| | ||| || || ||| Sbjct 68626075 AGA-------CATCTTCCAATTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGGA 68626023 Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316 |||||||| || || || ||| ||||||| ||||| | || | ||| || Sbjct 68626022 ATTCCTTCCTTATCCTGGATATTGGCCTTTACATTTTCTGTTGTGTTCAAGGGTTCAACC 68625963 Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || | ||| ||||| || ||||| || ||||| || ||||| ||||| Sbjct 68625962 TCAAGGGTGATGGTCTTCCCTGTAAGGGTTTTCACGAAAATCTGCAT 68625916 >seq228 Length=146850525 Score = 82.4 bits (90), Expect = 6e-11 Identities = 156/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 ||||| | | ||| || || | |||||| || || || ||||| || ||||| || Sbjct 76171942 CCACCACGAAGTCTCAACACAAGATGAAGAGTAGACTCCTTTTGAATATTGTAGTCAGAC 76172001 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 | | | | | ||||| | ||| |||||||| | |||| | ||| | | ||| Sbjct 76172002 AAAGTACGTCCTTCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCAGAGCAGGAGGA 76172061 Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316 |||||||| || || || ||| ||||||| ||||||| |||| ||| || Sbjct 76172062 ATTCCTTCCTTCTCCTGGATCTTGGCCTTTACATTTTCTATCGTATTCGAGGGTTCAACC 76172121 Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATT 15366 || | ||| ||||| || || || || ||||| |||||||| ||||| || Sbjct 76172122 TCGAGGGTGATGGTCTTCCCCGTAAGGGTTTTCACAAAAATCTGCATTTT 76172171 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 362145648737541