Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Macaca_20fascicularis_20[refseq_20GCF_5F000364345.1_202013-06-12] 7,601 sequences; 2,946,843,737 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq481 242 3e-59 seq228 102 7e-17 seq323 82.4 7e-11 >seq481 Length=152835861 Score = 242 bits (268), Expect = 3e-59 Identities = 586/872 (67%), Gaps = 29/872 (3%) Strand=Plus/Plus Query 12863 TGATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTTTCCTTCTAACGAAATATTTTCC 12922 ||||| || | ||||| || ||||| ||||| || |||| | |||||||| ||| Sbjct 42596775 TGATACTCCTTTACTCTCTTCTCAAAGAAGTTCGTCTTTCAGT-----GAAATATTCTCC 42596829 Query 12923 ATAAAATCGAAAGGATTTT----TCGAACAATAGTATTTTTTACACCCTAATTCTAGTAA 12978 ||||| || || || || | || | || || || | || | ||| | | Sbjct 42596830 ATAAAGTCAAATGGGTTCTCTACTCTGAAAACC----TTGCTAAAACCCAGTTCCGGCAT 42596885 Query 12979 CAATCTGTCAGCAACAAACTCTATGTACTGTTTCATTAAATCACAGTTCATTCCTATTAA 13038 |||||| || |||||||| ||||| || ||||||| | || ||||| || || | Sbjct 42596886 G--TCTGTCTGCCACAAACTCAATGTATTGCTTCATTAGAGTGCAATTCATCCCAATGAG 42596943 Query 13039 TTTTACAGGCATAGCTTCTGTTAAAAAGtttttttCTATATCAACTGCTTCGATAACTAT 13098 || ||||||| || || || | || | | |||||| ||| || | ||||| | | Sbjct 42596944 CTTCACAGGCAAGGCCTCAGTGAGGAATTCCTGTTCTATCCGAACAGCATTGATAATTCT 42597003 Query 13099 GTCTCTTATTACGTTCTCTAATGGAGGATTTGATAGATGCTTAAACATCATACATGCAAA 13158 ||||||| | | ||| ||||| | | || || || ||||||| || ||||| Sbjct 42597004 TTCTCTTACTCTCTCCTCCAATGGTTTGTGTACCAGGTGATTGAACATCAGGCAAGCAAA 42597063 Query 13159 ATCACAGTGCAATCCTTCATCTCTACTTATTAGCTCGTTTGAAAATGTTAGACCCGGCAT 13218 ||||||||| || || ||||||| ||| || || || || ||||| || || || ||||| Sbjct 42597064 ATCACAGTGTAAACCCTCATCTCCACTAATAAGTTCATTGGAAAAGGTGAGGCCAGGCAT 42597123 Query 13219 AAGCCCTCGTTTTTTAATCCAAAATATAGCAGCAAACGAACCCGaaaaaaaTATTCCTTC 13278 || |||||||| || | ||| ||||| | ||||| |||| | |||| || ||||| Sbjct 42597124 CAGTCCTCGTTTCTTGAGCCAGAATATCGATGCAAAATAACC---AGAAAAGATGCCTTC 42597180 Query 13279 AACTGCTGCAAACGCTATCAAC-CTTTCACCATACGTA-CTATTTTTACTCTCTATCCAC 13336 |||| ||||| ||| |||| | ||| ||||| ||| || ||| | | | ||||| Sbjct 42597181 CGCTGCAGCAAAGACTA-CAACACGTTCCCCATAGGTAGCTGCTTTGTC-CCCAATCCAG 42597238 Query 13337 TTTCTGGCCCAGTTTGCTTTTTGTTTAACGCAGTTCATATTTTCTATTGCGTTAAATAAA 13396 | |||||| | ||| || | || || || ||| |||| || || || || | Sbjct 42597239 TGCAAGGCCCAATCTGCCTTCTTCTTGACACAAGGCATCGTTTCAATGGCATTGAAGCGA 42597298 Query 13397 TAAtttttttCCTTACTGTCTAAAATATAAGTATCTATCAATAAGCTATACATTTCTGAA 13456 | | |||| || ||| || ||||| || || | || ||||||||| | ||| Sbjct 42597299 AATTCCCTTTCTTTGGGATCTTTTATGTAAGTGTCAATAAGGAAACTATACATTCCAGAA 42597358 Query 13457 TGAATATTTTCCATCGCTATTTGGAAACCATAAAAACATCTAGCCTCTGATACCTGAACT 13516 || || |||||||| || |||||||| ||| | ||||| | || |||| ||||||||| Sbjct 42597359 TGTATGTTTTCCATGGCAATTTGGAAGCCACAGAAACAGCGGGCTTCTGTCACCTGAACT 42597418 Query 13517 TCGGAGTAAAATCTTTCTGCTAAGTTTTCGTTAACTATCCCGTCACTAGCAGCaaa-aaa 13575 || | | ||| || | |||||| | || ||||| || ||||| || ||||| ||| Sbjct 42597419 TCTTGGCTACATCGCTCCACCAAGTTTGCATTTACTATGCCATCACTTGC-GCAAAGAAA 42597477 Query 13576 aGCA-AGTATGTGCT-TAATAAAttttttttCGTTTTCTGACAACTTTAACCAATCTGGA 13633 | || | ||| | | ||| | || | | ||| | | | | || ||| | | Sbjct 42597478 ACCAGAACATGGGATATAAAATATCTCTCCTCGGGCT-TCAGGAATT--CCCAGTGCCAA 42597534 Query 13634 AAATCTTTTGATAAATCTACCTCCTCAACGGTCCAAAAAGAAGCAACAGCCTTCTTATAC 13693 | || || || || |||||||| ||||||| || ||||| | |||||||||||| Sbjct 42597535 ATGTCCTTGGACGGGTCCACCTCCTCGGCGGTCCAGAAGGAAGCTTCCGCCTTCTTATAC 42597594 Query 13694 ATCATCCATATATCCTTATAAACAATGGGAAA 13725 ||| ||| ||||| | || | ||||| || Sbjct 42597595 ATCTGCCAGATATCATGGTACTCGATGGGGAA 42597626 >seq228 Length=146850525 Score = 102 bits (112), Expect = 7e-17 Identities = 104/136 (76%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 13173 CTTCATCTCTACTTATTAGCTCGTTTGAAAATGTTAGACCCGGCATAAGCCCTCGTTTTT 13232 |||||||||| || || || || || ||||| || || || |||||||| |||| || | Sbjct 103367669 CTTCATCTCTGCTGATGAGTTCATTGGAAAAAGTGAGTCCTGGCATAAGACCTCTCTTCT 103367728 Query 13233 TAATCCAAAATATAGCAGCAAACGAACCCGaaaaaaaTATTCCTTCAACTGCTGCAAACG 13292 | | ||| |||||||||||||| || || || || || |||||||| || || ||||| | Sbjct 103367729 TTAGCCAGAATATAGCAGCAAAAGATCCTGAGAAGAAAATTCCTTCTACAGCAGCAAAGG 103367788 Query 13293 CTATCAACCTTTCACC 13308 | | || ||||| || Sbjct 103367789 CCACCACTCTTTCCCC 103367804 Score = 93.3 bits (102), Expect = 4e-14 Identities = 68/79 (86%), Gaps = 0/79 (0%) Strand=Plus/Plus Query 12863 TGATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTTTCCTTCTAACGAAATATTTTCC 12922 ||||| || ||||| ||| ||||| || ||||||||||||||||| ||||| |||||| Sbjct 103356739 TGATACTCCGAAACTCGTTTCTCAAAGAAATTTGTTTTTCCTTCTAAAGAAATGTTTTCC 103356798 Query 12923 ATAAAATCGAAAGGATTTT 12941 |||||||| |||||||||| Sbjct 103356799 ATAAAATCAAAAGGATTTT 103356817 >seq323 Length=111193037 Score = 82.4 bits (90), Expect = 7e-11 Identities = 79/99 (80%), Gaps = 2/99 (2%) Strand=Plus/Plus Query 13421 ATATAAGTATCTATCAATAAG-CTATACATTTCTGAATGAATATTTTCCATCGCTATTTG 13479 || ||||| || || || ||| ||||||||||| ||||| || |||||||| || ||||| Sbjct 100858299 ATGTAAGTGTCAAT-AAGAAGACTATACATTTCAGAATGTATGTTTTCCATGGCAATTTG 100858357 Query 13480 GAAACCATAAAAACATCTAGCCTCTGATACCTGAACTTC 13518 ||| ||||| ||||| | || |||| | ||||||||| Sbjct 100858358 GAAGCCATAGAAACAGCGGGCTTCTGTAATCTGAACTTC 100858396 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430942475002602