Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Macaca_20fascicularis_20[refseq_20GCF_5F000364345.1_202013-06-12] 7,601 sequences; 2,946,843,737 total letters Query= NC_005336.1 Length=139962 Score E Sequences producing significant alignments: (Bits) Value seq1 116 3e-21 seq313 114 1e-20 seq246 109 5e-19 >seq1 Length=227556264 Score = 116 bits (128), Expect = 3e-21 Identities = 117/152 (77%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 128874 GGCTACCTCGGGTGCCAGGCACTCTCTGAGATGATACAGTTTTACTTGGAAGAGGTGATG 128933 || ||||| || ||||| || | ||||||||||| ||||||||| |||| ||||||||| Sbjct 65343388 GGTTACCTGGGTTGCCAAGCCTTGTCTGAGATGATCCAGTTTTACCTGGAGGAGGTGATG 65343329 Query 128934 CCGCAGGCGGAAAATCACGGGCCGGACATCAAAGAGCACGTTAACTCGCTGGGAGAAAAG 128993 || || || || || |||| || |||||||| ||||| || ||||| ||||| || || Sbjct 65343328 CCCCAAGCTGAGAACCACGACCCAGACATCAAGGAGCATGTGAACTCCCTGGGGGAGAAT 65343269 Query 128994 CTCAAAACGCTGCGTCTTCGACTGCGTCGCTG 129025 || || || || | || | ||||| ||||| Sbjct 65343268 CTGAAGACCCTCAGGCTGAGGCTGCGGCGCTG 65343237 Score = 82.4 bits (90), Expect = 7e-11 Identities = 56/63 (89%), Gaps = 0/63 (0%) Strand=Plus/Minus Query 129104 AGGCGTTTACAAGGCCATGAGCGAGTTCGACATATTCATCAACTACATAGAATCATACAT 129163 |||||| ||||| |||||||| ||||| ||||| |||||||||||||||||| | ||||| Sbjct 65340981 AGGCGTCTACAAAGCCATGAGTGAGTTTGACATCTTCATCAACTACATAGAAGCCTACAT 65340922 Query 129164 GAC 129166 ||| Sbjct 65340921 GAC 65340919 >seq313 Length=132586672 Score = 114 bits (126), Expect = 1e-20 Identities = 178/254 (70%), Gaps = 3/254 (1%) Strand=Plus/Minus Query 5270 TCGGTGTCGTCCAAGCGGTTAACCTCTTGAACTGCTGGGTGCGATATGCGTTCGCATATT 5329 |||||||| ||||| | ||| ||| | | |||| | | || |||||||| || Sbjct 63792707 TCGGTGTCATCCAAAGCTTGAACTTCT---ATTTCTGGATAAAAAATCCGTTCGCAAATG 63792651 Query 5330 AGCTGAGCTATCCTGTCTCCCTTCTTAACCTCAAAGTCGCTGTTTCCGAAGTTAAACAGC 5389 ||||| || || | || ||||| || || ||||| | || || || |||||||| Sbjct 63792650 AGCTGTGCAATTCGATCACCCTTTTTGACTTCAAACTTTTCTTTGCCAAAATTAAACAGT 63792591 Query 5390 ACCACCCCGACATTGCCTCGGTAGTCTTCGTCGATAACGCCAGCGCCCACGTCGATAAAG 5449 || || || ||||| |||| || ||||| || || || ||||| || || || |||||| Sbjct 63792590 ACAACACCAACATTTCCTCTATAATCTTCATCTATGACACCAGCTCCTACATCAATAAAG 63792531 Query 5450 TGTTTGACCGCAAGGCCGGAACGTGGTGCTATGCGTCCGTAGCAACCAGGTGGGAGCTTT 5509 ||||| | || | ||| || | ||| |||| | ||| || || |||| |||||| | Sbjct 63792530 TGTTTTGCAGCCAAGCCTGACCTTGGAGCTACTCTTCCATAACACCCAGAAGGGAGCGCT 63792471 Query 5510 ATCAGAAGGTCAGT 5523 ||| ||| ||| || Sbjct 63792470 ATCTGAATGTCCGT 63792457 >seq246 Length=133195287 Score = 109 bits (120), Expect = 5e-19 Identities = 178/255 (70%), Gaps = 1/255 (0%) Strand=Plus/Plus Query 5270 TCGGTGTCGTCCAAGCGGTTAACCTCTTGAACTGCTGGGTGCGATATGCGTTCGCATATT 5329 |||||||| ||||| | ||| |||| | | |||| | | || |||||||| || Sbjct 91140583 TCGGTGTCATCCAAAGCTTGAACTTCTTCTATTTCTGGATAAAAAATCCGTTCGCAAATG 91140642 Query 5330 AGCTGAGCTATCCTGTCTCCCTTCTTAACCTCAAAGTCGCTGTTTCCGAAGTTAAACAGC 5389 ||||| || || | || | ||| || || ||||| | || || ||||||||||| Sbjct 91140643 AGCTGTGCAATTCGATCACACTTTTTGACTTCAAACTTTTCTTTGCCAAAGTTAAACAGT 91140702 Query 5390 ACCACCCCGACATTGCCTCGGTAGTCTTCGTCGATAACGCCAGCGCCCACGTCGATAAAG 5449 || | || ||||| |||| || ||||| || || || ||||| || || || |||||| Sbjct 91140703 ACACCACCAACATTTCCTCTATAATCTTCATCTATGACACCAGCTCCTACATCAATAAAG 91140762 Query 5450 TG-TTTGACCGCAAGGCCGGAACGTGGTGCTATGCGTCCGTAGCAACCAGGTGGGAGCTT 5508 || |||| || | ||| || |||| |||| | ||| || || |||| |||||| Sbjct 91140763 TGTTTTGCAAGCCAAGCCTGACTGTGGAGCTACTCTTCCATAACACCCAGAAGGGAGCGC 91140822 Query 5509 TATCAGAAGGTCAGT 5523 |||| ||| ||| || Sbjct 91140823 TATCTGAATGTCCGT 91140837 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 447707858115120