Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Macaca_20fascicularis_20[refseq_20GCF_5F000364345.1_202013-06-12] 7,601 sequences; 2,946,843,737 total letters Query= NC_006146.1 Length=171096 Score E Sequences producing significant alignments: (Bits) Value seq1 147 2e-30 >seq1 Length=227556264 Score = 147 bits (162), Expect = 2e-30 Identities = 116/139 (83%), Gaps = 0/139 (0%) Strand=Plus/Minus Query 10140 AGGGCTACCTGGGATGTCAGGCCCTGTCTGAAATGATCCAGTTTTACCTGGAGGAAGTAA 10199 |||| |||||||| || || ||| ||||||| ||||||||||||||||||||||| || | Sbjct 65343390 AGGGTTACCTGGGTTGCCAAGCCTTGTCTGAGATGATCCAGTTTTACCTGGAGGAGGTGA 65343331 Query 10200 TGCCACAGGCTGAAAATCAGGACCCCCACGCCAAAGAGCACGTGAACTCTCTGGGCGAGA 10259 |||| || ||||| || || ||||| || ||| ||||| |||||||| ||||| |||| Sbjct 65343330 TGCCCCAAGCTGAGAACCACGACCCAGACATCAAGGAGCATGTGAACTCCCTGGGGGAGA 65343271 Query 10260 ATCTAAAGACCCTAAGGCT 10278 |||| |||||||| ||||| Sbjct 65343270 ATCTGAAGACCCTCAGGCT 65343252 Score = 100 bits (110), Expect = 3e-16 Identities = 73/85 (86%), Gaps = 0/85 (0%) Strand=Plus/Minus Query 10359 AGCTGCAGGAAAAAGGAGTCTACAAAGCCATGAGTGAATTTGACATTTTTATTAACTATA 10418 |||| || || ||||| |||||||||||||||||||| |||||||| || || ||||| | Sbjct 65340994 AGCTCCAAGAGAAAGGCGTCTACAAAGCCATGAGTGAGTTTGACATCTTCATCAACTACA 65340935 Query 10419 TAGAAGCATACATGACCATGAAAAT 10443 ||||||| |||||||| ||||| || Sbjct 65340934 TAGAAGCCTACATGACAATGAAGAT 65340910 Score = 82.4 bits (90), Expect = 8e-11 Identities = 56/63 (89%), Gaps = 0/63 (0%) Strand=Plus/Minus Query 10301 TTTCTCCCGTGTGAAAACAAGAGCAAGGCTGTGGAGCAGGTCAAGAATGCCTTCAGCAAG 10360 ||||| || |||||||||||||||||||| ||||||||||| ||||||||||| || ||| Sbjct 65342176 TTTCTTCCCTGTGAAAACAAGAGCAAGGCCGTGGAGCAGGTGAAGAATGCCTTTAGTAAG 65342117 Query 10361 CTG 10363 || Sbjct 65342116 GTG 65342114 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547327192133760