Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Macaca_20fascicularis_20[refseq_20GCF_5F000364345.1_202013-06-12] 7,601 sequences; 2,946,843,737 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq93 168 1e-37 seq7143 127 3e-25 seq2030 127 3e-25 >seq93 Length=170955103 Score = 168 bits (186), Expect = 1e-37 Identities = 198/268 (74%), Gaps = 0/268 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 |||||||||||| |||| | | || || ||||| || || ||||| |||||||| || Sbjct 144291926 CGCTAAGCGTCACCGCAAGGTTTTGCGGGACAACATTCAGGGCATCACTAAGCCAGCCAT 144291985 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| || || ||||| || || || ||||||||| | ||||| | ||||||| |||| Sbjct 144291986 CCGCCGCCTTGCTCGCCGCGGCGGTGTCAAGCGTATTTCTGGCCTTATCTATGAGGAGAC 144292045 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 |||| |||| ||||| | ||||| ||| ||| || | |||||| || || || || Sbjct 144292046 CCGTGGTGTTCTGAAGGTGTTCCTGGAGAACGTGATTCGTGATGCAGTCACTTACACGGA 144292105 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 ||| |||||||| |||||||| || | |||||| | |||||||| |||| || || || Sbjct 144292106 GCATGCTAAACGCAAGACTGTAACAGCAATGGATGTGGTCTATGCGCTGAAGCGACAGGG 144292165 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAA 16699 || | |||| || || || ||||| Sbjct 144292166 ACGCACTCTTTACGGCTTCGGTGGTTAA 144292193 Score = 158 bits (174), Expect = 2e-34 Identities = 191/260 (73%), Gaps = 0/260 (0%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 |||||||| ||||| | || || ||||||||||| || ||||| ||||| ||||| Sbjct 144469333 GCTAAGCGCCATCGTAAGGTGCTCCGGGATAACATCCAGGGCATCACAAAGCCGGCTATT 144469274 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 || ||| ||||||| || ||||| |||||||| | || || | ||||||| || | | Sbjct 144469273 CGCCGTTTGGCTCGGCGCGGTGGCGTCAAGCGCATTTCCGGTCTCATCTATGAGGAAACT 144469214 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 || | ||| ||||| | ||| | ||| |||||| | || ||| | |||||| ||| Sbjct 144469213 CGAGGTGTGCTGAAGGTTTTCTTAGAGAACGTTATTCGAGACGCTGTTACCTATACGGAG 144469154 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 ||||| || || || |||||||| |||||||| | || ||||| | |||||||| || Sbjct 144469153 CACGCCAAGCGCAAAACTGTCACAGCCATGGATGTAGTATATGCTCTAAAACGTCAGGGG 144469094 Query 16673 CGTAAGATTTATGGTTTTGG 16692 || | | |||||||| || Sbjct 144469093 CGCACTCTGTATGGTTTCGG 144469074 Score = 154 bits (170), Expect = 2e-33 Identities = 190/260 (73%), Gaps = 0/260 (0%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || ||||| || |||| | || || || |||||||| || |||||||||||||| ||| Sbjct 143693166 GCCAAGCGCCACCGCAAAGTGCTGCGCGACAACATCCAGGGCATCACCAAGCCAGCCATC 143693107 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 || || || ||||| || || || || ||||| |||| || | ||||||| |||| Sbjct 143693106 CGGCGCCTTGCTCGCCGCGGCGGTGTGAAGCGCATCTCCGGCCTCATCTATGAGGAGACC 143693047 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 || | || ||||| ||||||| ||| ||| |||| || || | ||| || ||| Sbjct 143693046 CGCGGGGTGCTGAAGGTCTTCCTGGAGAACGTGATCCGGGACGCCGTGACCTACACGGAG 143692987 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 ||||| || || ||||| |||||| ||||||| | |||||||| |||| || || ||| Sbjct 143692986 CACGCCAAGCGCAAGACGGTCACCGCCATGGACGTAGTCTATGCGCTGAAGCGCCAGGGC 143692927 Query 16673 CGTAAGATTTATGGTTTTGG 16692 || | ||||||| || || Sbjct 143692926 CGCACCCTTTATGGCTTCGG 143692907 Score = 154 bits (170), Expect = 2e-33 Identities = 193/262 (74%), Gaps = 2/262 (1%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTT-CGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||| |||||||| |||| | | || || || || ||||||||||||||||||||||| | Sbjct 144384490 CGCCAAGCGTCACCGCA-AGGTGTTGCGCGACAATATCCAAGGAATCACCAAGCCAGCCA 144384548 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 |||| || |||||||| || || || ||||||||| | ||||| | ||||||| |||| Sbjct 144384549 TCCGCCGCCTGGCTCGCCGCGGCGGCGTCAAGCGTATTTCTGGCCTCATCTATGAGGAGA 144384608 Query 16551 TTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCG 16610 ||| | || ||||| | || || | | || |||| |||||| || ||| || | Sbjct 144384609 CTCGCGGAGTGCTGAAGGTTTTTCTGGAAAATGTAATCCGCGATGCTGTCACCTACACGG 144384668 Query 16611 AGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAG 16670 ||||||| ||||| ||||| ||||| ||||||| | || ||||| | || || || | Sbjct 144384669 AGCACGCCAAACGCAAGACGGTCACAGCCATGGACGTGGTGTATGCGCTCAAGCGCCAGG 144384728 Query 16671 GCCGTAAGATTTATGGTTTTGG 16692 | || | | ||||| || || Sbjct 144384729 GACGCACTCTGTATGGCTTCGG 144384750 Score = 145 bits (160), Expect = 1e-30 Identities = 193/268 (72%), Gaps = 0/268 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||||||||| || |||| || || || |||||||| || ||||||||||| || || Sbjct 142974679 CGCTAAGCGCCACCGCAAGGTGCTGCGTGACAACATCCAGGGCATCACCAAGCCGGCCAT 142974738 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| || || ||||| || || || || ||||| ||||||| | |||| || |||| Sbjct 142974739 CCGGCGCCTTGCTCGCCGCGGCGGCGTGAAGCGCATCTCTGGTCTCATCTACGAGGAGAC 142974798 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 |||| || |||| ||||||| ||| ||| |||| || ||| | ||| || || Sbjct 142974799 CCGTGGGGTGCTGAAAGTCTTCCTGGAGAACGTGATCCGGGACGCTGTGACCTACACGGA 142974858 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || || ||||| |||||| |||||||| | || || || |||| || || || Sbjct 142974859 GCACGCCAAGCGCAAGACGGTCACCGCCATGGATGTGGTTTACGCGCTGAAGCGCCAGGG 142974918 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAA 16699 || | | || ||||| || ||||| Sbjct 142974919 TCGCACCCTCTACGGTTTCGGCGGTTAA 142974946 Score = 143 bits (158), Expect = 4e-30 Identities = 199/279 (71%), Gaps = 0/279 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||| || || | | || || |||||||||||||| ||||| ||||| || || Sbjct 144546223 CGCCAAGCGCCACCGGAAAGTGCTGCGGGATAACATCCAAGGCATCACTAAGCCGGCCAT 144546282 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 || || || ||| | |||||||| || || || |||| || ||| | || || |||| Sbjct 144546283 TCGGCGCCTTGCTAGGCGTGGTGGGGTTAAACGGATCTCCGGTTTGATTTACGAGGAGAC 144546342 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | |||| | ||| | || || ||| ||| |||| || || | |||||| || Sbjct 144546343 CCGAGGTGTTCTCAAGGTTTTTCTGGAGAACGTGATCCGGGACGCCGTGACCTATACGGA 144546402 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || || ||||||||||| |||||||| | || || || | || || ||||| Sbjct 144546403 GCACGCCAAGCGCAAGACTGTCACTGCCATGGATGTGGTTTACGCGCTCAAGCGCCAAGG 144546462 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAATCTTCTAATCA 16710 || | | || ||||| || |||||| || || ||| Sbjct 144546463 ACGCACTCTATACGGTTTCGGCGGTTAATATTTTAGTCA 144546501 Score = 141 bits (156), Expect = 1e-29 Identities = 188/261 (72%), Gaps = 0/261 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||||||||| || |||| || || || |||||||| || ||||||||||| || || Sbjct 142979291 CGCTAAGCGCCACCGCAAGGTGCTGCGTGACAACATCCAGGGCATCACCAAGCCGGCCAT 142979232 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| || || ||||| || || || || ||||| ||||||| | |||| || |||| Sbjct 142979231 CCGGCGCCTTGCTCGCCGCGGCGGCGTGAAGCGCATCTCTGGTCTCATCTACGAGGAGAC 142979172 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 |||| || |||| ||||||| ||| ||| |||| || ||| | ||| || || Sbjct 142979171 CCGTGGGGTGCTGAAAGTCTTCCTGGAGAACGTGATCCGGGACGCTGTGACCTACACGGA 142979112 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || || ||||| |||||| |||||||| | || || || |||| || || || Sbjct 142979111 GCACGCCAAGCGCAAGACGGTCACCGCCATGGATGTGGTTTACGCGCTGAAGCGCCAGGG 142979052 Query 16672 CCGTAAGATTTATGGTTTTGG 16692 || | | || ||||| || Sbjct 142979051 TCGCACCCTCTACGGTTTCGG 142979031 Score = 141 bits (156), Expect = 1e-29 Identities = 190/262 (73%), Gaps = 2/262 (1%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTT-CGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||| |||||||| |||| | |||| |||||||||||||| || || ||||| || || | Sbjct 144367590 CGCCAAGCGTCACCGCAAAG-TCTTGCGAGATAACATCCAGGGTATTACCAAACCTGCCA 144367532 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 |||| ||||| ||||| || || || |||||||| | |||||| | ||||||| |||| Sbjct 144367531 TCCGGCGTCTTGCTCGGCGCGGCGGTGTCAAGCGCATTTCTGGACTCATCTATGAGGAGA 144367472 Query 16551 TTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCG 16610 || | || ||||| | || || ||| ||| |||| ||| ||| | || || | Sbjct 144367471 CCCGCGGGGTGCTGAAGGTGTTTCTAGAGAACGTGATCCGTGACGCTGTTACTTACACGG 144367412 Query 16611 AGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAG 16670 ||||||| || || ||||| || || | |||||| | ||||| || | ||||| || | Sbjct 144367411 AGCACGCCAAGCGCAAGACCGTAACAGCGATGGATGTGGTCTACGCTCTCAAACGACAGG 144367352 Query 16671 GCCGTAAGATTTATGGTTTTGG 16692 | || | |||| || || || Sbjct 144367351 GACGCACTCTTTACGGCTTCGG 144367330 Score = 140 bits (154), Expect = 5e-29 Identities = 189/261 (72%), Gaps = 2/261 (1%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTT-CGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 || ||||| || |||| | | || || || |||||||| || ||||||||||| || || Sbjct 144551601 GCCAAGCGCCACCGCA-AGGTGTTGCGCGACAACATCCAGGGCATCACCAAGCCGGCCAT 144551543 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| |||||||| || ||||| || |||||| | ||||||| || |||| || |||| Sbjct 144551542 CCGGCGTCTGGCCCGGCGTGGAGGTGTCAAGAGGATCTCTGGTCTGATCTACGAGGAGAC 144551483 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 ||| | || | ||| | || | ||| ||| |||| ||| ||| || |||||| || Sbjct 144551482 TCGCGGGGTGCTCAAGGTGTTTTTGGAGAACGTGATCCGTGACGCTGTCACCTATACGGA 144551423 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 ||||| || || ||||| ||||| | ||||| | ||||| || | || || || || Sbjct 144551422 ACACGCCAAGCGCAAGACGGTCACTGCTATGGACGTGGTCTACGCGCTCAAGCGCCAGGG 144551363 Query 16672 CCGTAAGATTTATGGTTTTGG 16692 || | ||||||| ||||| Sbjct 144551362 ACGCACCCTTTATGGCTTTGG 144551342 Score = 102 bits (112), Expect = 1e-17 Identities = 179/261 (69%), Gaps = 0/261 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||||||||| || |||| | || || || || || || || |||||||||||||| || Sbjct 142933025 CGCTAAGCGCCACCGCAAAGTCCTGCGCGACAATATTCAGGGTATCACCAAGCCAGCCAT 142933084 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| || ||||| || || || || || ||||| |||| || | | || || |||| Sbjct 142933085 CCGACGCCTGGCACGGCGAGGAGGCGTTAAGCGCATCTCAGGCCTTATATACGAGGAGAC 142933144 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | ||| | ||| | || | ||| || |||| ||||| | ||| || || Sbjct 142933145 GCGCGGAGTTCTTAAGGTGTTTTTGGAGAATGTGATCCGCGATGCAGTTACCTACACGGA 142933204 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 || || ||||| ||||| ||||| ||||||| | || || || | || || || || Sbjct 142933205 ACATGCCAAACGCAAGACAGTCACGGCCATGGACGTGGTTTACGCGCTCAAGCGCCAGGG 142933264 Query 16672 CCGTAAGATTTATGGTTTTGG 16692 || | | ||||| ||||| Sbjct 142933265 TCGCACCCTCTATGGCTTTGG 142933285 >seq7143 Length=10825 Score = 127 bits (140), Expect = 3e-25 Identities = 176/244 (72%), Gaps = 2/244 (1%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||||||||| || |||| | || || |||| ||||| || || ||||||||||| || | Sbjct 7260 CGCTAAGCGCCACCGCAAGGTC-CTGAGAGACAACATTCAGGGCATCACCAAGCCTGCCA 7202 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 | || ||||| ||||| ||||| || || ||||| ||||||| | | || || |||| Sbjct 7201 TTCGGCGTCTAGCTCGGCGTGGCGGCGTTAAGCGGATCTCTGGCCTCATTTACGAGGAGA 7142 Query 16551 TTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCG 16610 || | ||| ||||| | || || ||| ||| || | || || || ||| |||| Sbjct 7141 CCCGCGGTGTGCTGAAGGTGTTTCTGGAGAACGTGATTCGGGACGCAGTCACCTACACCG 7082 Query 16611 AGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAG 16670 ||||||| || || ||||| ||||| |||||||| | || || || | || || || | Sbjct 7081 AGCACGCCAAGCGCAAGACCGTCACAGCCATGGATGTGGTGTACGCGCTCAAGCGCCAGG 7022 Query 16671 GCCG 16674 | || Sbjct 7021 GGCG 7018 >seq2030 Length=9066 Score = 127 bits (140), Expect = 3e-25 Identities = 176/244 (72%), Gaps = 2/244 (1%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||||||||| || |||| | || || |||| ||||| || || ||||||||||| || | Sbjct 3034 CGCTAAGCGCCACCGCAAGGTC-CTGAGAGACAACATTCAGGGCATCACCAAGCCTGCCA 2976 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 | || ||||| ||||| ||||| || || ||||| ||||||| | | || || |||| Sbjct 2975 TTCGGCGTCTAGCTCGGCGTGGCGGCGTTAAGCGGATCTCTGGCCTCATTTACGAGGAGA 2916 Query 16551 TTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCG 16610 || | ||| ||||| | || || ||| ||| || | || || || ||| |||| Sbjct 2915 CCCGCGGTGTGCTGAAGGTGTTTCTGGAGAACGTGATTCGGGACGCAGTCACCTACACCG 2856 Query 16611 AGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAG 16670 ||||||| || || ||||| ||||| |||||||| | || || || | || || || | Sbjct 2855 AGCACGCCAAGCGCAAGACCGTCACAGCCATGGATGTGGTGTACGCGCTCAAGCGCCAGG 2796 Query 16671 GCCG 16674 | || Sbjct 2795 GGCG 2792 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79068250352493