Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Macaca_20fascicularis_20[refseq_20GCF_5F000364345.1_202013-06-12] 7,601 sequences; 2,946,843,737 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq336 96.9 9e-15 seq481 95.1 3e-14 >seq336 Length=130733371 Score = 96.9 bits (106), Expect = 9e-15 Identities = 113/153 (74%), Gaps = 0/153 (0%) Strand=Plus/Minus Query 364111 GCACAGAAGCTATGGTTTGCCATCATGGATTCGCAGATTGAGACAGGAACACCCTATATG 364170 || ||| |||| |||| ||||||||| || || || | || ||||| || || |||||| Sbjct 66515066 GCTCAGCAGCTTTGGTATGCCATCATTGAGTCTCAAACAGAAACAGGCACCCCATATATG 66515007 Query 364171 TTGTACAAAGATTCGTGCAACCGCAAGTCCAACCAGCAGCACCTTGGTACAATTCAGCAG 364230 | ||||||||||| || || || ||| |||||||||| |||| || || || | Sbjct 66515006 CTCTACAAAGATTCCTGTAATCGAAAGAGCAACCAGCAGAACCTGGGAACCATCAAATGC 66514947 Query 364231 AGCAACCTATGTACCGAGATTATTGAATACACC 364263 |||||||| || || || || | || |||||| Sbjct 66514946 AGCAACCTGTGCACAGAAATAGTGGAGTACACC 66514914 >seq481 Length=152835861 Score = 95.1 bits (104), Expect = 3e-14 Identities = 151/213 (71%), Gaps = 8/213 (4%) Strand=Plus/Minus Query 22435 AAGAATAAGGCAGATTGGGCGCTGAAATGGAT---GAACAATGAACGTTCATTCGCGGAA 22491 ||||| |||||||||||||| || | ||||| | |||| | | | | | | |||| Sbjct 42597264 AAGAAGAAGGCAGATTGGGCCTTGCACTGGATTGGGGACAAAGCAGCTACCTATGGGGAA 42597205 Query 22492 CGTCTTATTGCATTTGCTGTGGTTGAAGGCATTTTCTTTTCTGGAGCATTTTGTG-CAAT 22550 ||| || | | ||||||| | |||||||| ||||||||| |||||| | || Sbjct 42597204 CGTGTTGTAGTCTTTGCTGCAGCGGAAGGCAT---CTTTTCTGGTT-ATTTTGCATCGAT 42597149 Query 22551 CTTTTGGCTaaaaaaaCGTGCAATTATGCCGGGTCTAACGTTTTCAAATGAGTTAATTAG 22610 || ||||| || ||||| | | | ||||| || || || ||||| ||||| | ||||| Sbjct 42597148 ATTCTGGCTCAAGAAACGAGGACTGATGCCTGGCCTCACCTTTTCCAATGAACTTATTAG 42597089 Query 22611 CCGAGATGAGGGTCTTCATACCGATTTTGCGTG 22643 ||||||||||| | || |||||||| || Sbjct 42597088 TGGAGATGAGGGTTTACACTGTGATTTTGCTTG 42597056 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303226669243982