Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Macaca_20fascicularis_20[refseq_20GCF_5F000364345.1_202013-06-12] 7,601 sequences; 2,946,843,737 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq428 116 3e-21 seq163 87.8 2e-12 >seq428 Length=75711847 Score = 116 bits (128), Expect = 3e-21 Identities = 156/214 (73%), Gaps = 6/214 (3%) Strand=Plus/Minus Query 24991 ACGGAACAATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGG 25050 ||| || ||||| || ||||| ||||| | || || ||| ||||||| |||| || | Sbjct 71761976 ACGCAAACATGCAGATCTTTGTGAAGACCCTCACGGGCAAAACCATCACCCTCGAGGTCG 71761917 Query 25051 AGTCGTCTGACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTC 25107 || | |||||| || ||| | || |||| |||| ||| ||||| || || || | Sbjct 71761916 AGCCCAGTGACACCATTGAG--AATGTCAAAGCCAAAATTCAA-GACAAGGAGGGTATCC 71761860 Query 25108 CACCTGACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGG 25167 |||||||||| ||||| | || |||||||||||||| | ||||||| |||||| | Sbjct 71761859 CACCTGACCAGCAGCGTCTGATATTTGCCGGCAAACAGCTGGAAGATGGCCGCACTCTCT 71761800 Query 25168 GCGATTACAATATTCAAAAAGAATCCACGCTACA 25201 || ||||| || || ||||| ||||| || || Sbjct 71761799 CAGACTACAACATCCAGAAAGAGTCCACCCTGCA 71761766 >seq163 Length=189454096 Score = 87.8 bits (96), Expect = 2e-12 Identities = 127/177 (72%), Gaps = 8/177 (5%) Strand=Plus/Plus Query 24991 ACGGAACAATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGG 25050 ||| || ||||| || ||||| ||||| | | || ||| ||||||| | || || | Sbjct 87956042 ACGCAAACATGCAGATCTTTGTGAAGACCCTCCCGGGCAAAACCATCACCCTTGAGGTCG 87956101 Query 25051 AGTCGTCTGACACTATCGAG----TCACTGAAGCAAAAAATCACTGACAAAGAAGGGATT 25106 || | |||||| || ||| ||| |||| |||| ||| ||||| || || || Sbjct 87956102 AGCCCAGTGACACCATTGAGAACGTCA---AAGCCAAAATTCAA-GACAAGGAGGGTATC 87956157 Query 25107 CCACCTGACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACT 25163 ||||||||||| ||||| | || |||||| ||||||| | ||||||| |||||| Sbjct 87956158 CCACCTGACCAGCAGCGTCTGATATTTGCCAGCAAACAGCTGGAAGATGGCCGCACT 87956214 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433287857712815