Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Macaca_20fascicularis_20[refseq_20GCF_5F000364345.1_202013-06-12] 7,601 sequences; 2,946,843,737 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq428 159 3e-34 seq163 131 1e-25 seq30 129 5e-25 seq202 125 6e-24 seq355 116 3e-21 seq228 105 6e-18 seq463 91.5 1e-13 seq293 89.7 4e-13 >seq428 Length=75711847 Score = 159 bits (176), Expect = 3e-34 Identities = 174/231 (75%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 22215 AAAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAAC 22274 ||| ||||| || ||||| || || | || || ||||| |||| || || || || | Sbjct 71761972 AAACATGCAGATCTTTGTGAAGACCCTCACGGGCAAAACCATCACCCTCGAGGTCGAGCC 71761913 Query 22275 CACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGA 22334 || || ||| | || || ||||| ||||||||||||||||||||||| ||||| || Sbjct 71761912 CAGTGACACCATTGAGAATGTCAAAGCCAAAATTCAAGACAAGGAGGGTATCCCACCTGA 71761853 Query 22335 TCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTA 22394 || || ||||| |||||||||||||||||| | || ||| |||||| |||| || || Sbjct 71761852 CCAGCAGCGTCTGATATTTGCCGGCAAACAGCTGGAAGATGGCCGCACTCTCTCAGACTA 71761793 Query 22395 CAACATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 |||||| || ||||| |||||| | || | || ||||| |||| || || Sbjct 71761792 CAACATCCAGAAAGAGTCCACCCTGCACCTGGTGTTGCGCCTGCGAGGTGG 71761742 >seq163 Length=189454096 Score = 131 bits (144), Expect = 1e-25 Identities = 168/230 (73%), Gaps = 5/230 (2%) Strand=Plus/Plus Query 22215 AAAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAAC 22274 ||| ||||| || ||||| || || | | || ||||| |||| ||||| || || | Sbjct 87956046 AAACATGCAGATCTTTGTGAAGACCCTCCCGGGCAAAACCATCACCCTTGAGGTCGAGCC 87956105 Query 22275 CACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGA 22334 || || ||| | || | ||||| ||||||||||||||||||||||| ||||| || Sbjct 87956106 CAGTGACACCATTGAGAACGTCAAAGCCAAAATTCAAGACAAGGAGGGTATCCCACCTGA 87956165 Query 22335 TCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCA--CCGTCTCCGAT 22392 || || ||||| ||||||||| |||||||| | || ||| ||||| | |||| || Sbjct 87956166 CCAGCAGCGTCTGATATTTGCCAGCAAACAGCTGGAAGATGGCCGCACTCTCTCTCAGAC 87956225 Query 22393 TACAACATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGG 22442 |||||||| | |||| |||||| | || | || ||||| |||| || Sbjct 87956226 TACAACATCC---AAGAGTCCACCCTGCACCTGGTGTTGCGCCTGCGAGG 87956272 >seq30 Length=192460366 Score = 129 bits (142), Expect = 5e-25 Identities = 164/226 (73%), Gaps = 0/226 (0%) Strand=Plus/Minus Query 22217 AGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCA 22276 ||||||| || ||||| || || | || || || || |||||||||| || | ||| Sbjct 20003287 AGATGCAGATCTTTGTGAAGACCCTTACGGGCAAGACCATCACTCTTGAGGTCAAGCCCA 20003228 Query 22277 CCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATC 22336 || ||| || ||| ||||| ||||||||||||||||||||||| ||||| || | Sbjct 20003227 GTGACACCAATGAGGATGTCAAAGCCAAAATTCAAGACAAGGAGGGTATCCCACCTGACC 20003168 Query 22337 AACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACA 22396 | || | ||| ||| |||||||||||||| | |||||| ||| || |||| || ||| Sbjct 20003167 AGCAGCATCTGATACTTGCCGGCAAACAGCTGGAGGATGGCCGAACTCTCTCAGACTACG 20003108 Query 22397 ACATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGG 22442 |||| |||| |||||| | || | || |||| |||| || Sbjct 20003107 ACATCTGGGAAGAGTCCACCCTGCACCTGGTGCTGCGCCTGCGAGG 20003062 >seq202 Length=171882078 Score = 125 bits (138), Expect = 6e-24 Identities = 151/204 (74%), Gaps = 1/204 (0%) Strand=Plus/Plus Query 22217 AGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCA 22276 ||||||| || ||||| || || | || || || || |||| ||||| | || ||| Sbjct 122414458 AGATGCAGATCTTTGTGAAGACCCTCACGGGCAAGACCATCACCCTTGAGATTGAGCCCA 122414517 Query 22277 CCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGG-TATTCCACCCGAT 22335 || ||| | | || ||||| |||||||||||||||||||| ||| ||||| || Sbjct 122414518 GTGACACCATTTAGAATGTCAAAGCCAAAATTCAAGACAAGGAGGGATATCCCACCTGAC 122414577 Query 22336 CAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTAC 22395 || || ||||| ||| |||| || |||||| | |||||| |||||| |||| | ||| Sbjct 122414578 CAGCAGCGTCTGATACTTGCTGGGAAACAGCTGGAGGATGGCCGCACTCTCTCAGGCTAC 122414637 Query 22396 AACATTCAAAAAGAATCCACCATA 22419 ||||| || ||||| |||||| || Sbjct 122414638 AACATCCAGAAAGAGTCCACCCTA 122414661 Score = 100 bits (110), Expect = 2e-16 Identities = 141/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || | ||| || || | || || | ||| |||| |||| || | ||| Sbjct 84975699 ATGCAGATCTCTGTAAAGACCCTCACAGGAAGAACCATCACCTTTGAGGTCCAGCCCAGT 84975758 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| || || ||||| || || || ||||||||||| || ||||| || || Sbjct 84975759 GACACCAGTGAAAATGTCAAAGCCAAGATCCATGACAAGGAGGGCATCCCACCTGACCAG 84975818 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || | ||| ||||||| ||||||||||| |||||| || ||| | || ||||| ||| Sbjct 84975819 CAGCATCTGATATTTGTGGGCAAACAGTTGGAGGATGGCCACACTCTTTCAGATTATAAC 84975878 Query 22399 ATTCAAAAAGAATCCACC 22416 || || ||||| |||||| Sbjct 84975879 ATCCACAAAGAGTCCACC 84975896 >seq355 Length=112612857 Score = 116 bits (128), Expect = 3e-21 Identities = 154/214 (72%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| | ||||| | || | || || || || ||| ||||| || || ||| Sbjct 56763255 ATGCAGCTCTTTGTGGAGACCCTCACGGGCAAGACCATCATCCTTGAGGTCGAGCCCAGT 56763196 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 | ||| || || ||||| |||||||||||||| |||||||| ||||| || || Sbjct 56763195 TACACCACTGAGAATTTCAAAGCCAAAATTCAAGACAAAGAGGGTATCCCACCTGACCAG 56763136 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || |||| |||||||| ||||| ||| | |||||| | |||| |||| || |||||| Sbjct 56763135 CAGTGTCTGATATTTGCTGGCAAGCAGCTGGAGGATGGCTGCACTCTCTCAGACTACAAC 56763076 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGC 22432 || |||||| | |||||||| || | ||| ||| Sbjct 56763075 ATCCAAAAACAGTCCACCATGCACCTGGTTCTGC 56763042 >seq228 Length=146850525 Score = 105 bits (116), Expect = 6e-18 Identities = 91/113 (81%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 22303 AAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAA 22362 |||||||||||||||||||| || ||||| || || || | ||| ||| |||| |||||| Sbjct 124587454 AAAATTCAAGACAAGGAGGGCATCCCACCTGACCAGCAGCATCTGATACTTGCGGGCAAA 124587513 Query 22363 CAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCAC 22415 ||| | |||||| | |||| |||| || |||||||| || ||||| ||||| Sbjct 124587514 CAGCTGGAGGATGGCTGCACTCTCTCAGACTACAACATCCAGAAAGAGTCCAC 124587566 >seq463 Length=78541002 Score = 91.5 bits (100), Expect = 1e-13 Identities = 90/115 (78%), Gaps = 1/115 (1%) Strand=Plus/Minus Query 22303 AAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTAT-ATTTGCCGGCAA 22361 ||||||||||||||| |||| || | ||| || || || |||| || ||||| ||||| Sbjct 36008006 AAAATTCAAGACAAGTAGGGCATCCTACCTGACCAGCAGTGTCTGATAATTTGAGGGCAA 36007947 Query 22362 ACAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCACC 22416 | || | |||||| |||||| |||| || |||||||| || ||||| |||||| Sbjct 36007946 ATAGCTGGAGGATGGCCGCACTCTCTCAGACTACAACATCCAGAAAGAGTCCACC 36007892 >seq293 Length=137757926 Score = 89.7 bits (98), Expect = 4e-13 Identities = 139/199 (70%), Gaps = 0/199 (0%) Strand=Plus/Minus Query 22218 GATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCAC 22277 |||||| || || || || || | || || || || |||| || || || || ||| Sbjct 129296495 GATGCAGATCTTCGTGAAGACCCTGACTGGCAAGACCATCACCCTCGAGGTCGAGCCCAG 129296436 Query 22278 CGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCA 22337 || ||| | || | ||||| ||| || ||||||||||| || || || || || || Sbjct 129296435 TGACACCATCGAGAACGTCAAAGCAAAGATCCAAGACAAGGAAGGCATCCCTCCTGACCA 129296376 Query 22338 ACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAA 22397 || | | || |||||||| |||||| | || ||| |||||| | || || ||||| Sbjct 129296375 GCAGAGGTTGATCTTTGCCGGGAAACAGCTGGAAGATGGACGCACCCTGTCTGACTACAA 129296316 Query 22398 CATTCAAAAAGAATCCACC 22416 ||| || ||||| || ||| Sbjct 129296315 CATCCAGAAAGAGTCTACC 129296297 Score = 84.2 bits (92), Expect = 2e-11 Identities = 138/199 (69%), Gaps = 0/199 (0%) Strand=Plus/Minus Query 22218 GATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCAC 22277 |||||| || || || || || | || || || || |||| || || ||||| ||| Sbjct 129295811 GATGCAGATCTTCGTGAAGACCCTGACTGGCAAGACCATCACCCTCGAGGTGGAGCCCAG 129295752 Query 22278 CGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCA 22337 || || | || || |||| ||| || || ||||||||||| || || || || || Sbjct 129295751 TGACACTATTGAAAATGTCAAGGCAAAGATCCAGGACAAGGAGGGCATCCCTCCTGACCA 129295692 Query 22338 ACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAA 22397 || | | || ||||| || || ||| | || ||| |||||| | || || ||||| Sbjct 129295691 GCAGAGGTTGATCTTTGCTGGAAAGCAGCTGGAAGATGGGCGCACCCTGTCTGACTACAA 129295632 Query 22398 CATTCAAAAAGAATCCACC 22416 ||| || ||||| |||||| Sbjct 129295631 CATCCAGAAAGAGTCCACC 129295613 Score = 84.2 bits (92), Expect = 2e-11 Identities = 138/199 (69%), Gaps = 0/199 (0%) Strand=Plus/Minus Query 22218 GATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCAC 22277 |||||| || || || || || | || || || || |||| ||||| || || ||| Sbjct 129296039 GATGCAGATCTTCGTGAAGACCCTGACTGGCAAGACCATCACCCTTGAGGTCGAGCCCAG 129295980 Query 22278 CGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCA 22337 || || | || || |||| ||| || || ||||||||||| || || || || || Sbjct 129295979 TGACACTATTGAAAATGTCAAGGCAAAGATCCAGGACAAGGAGGGCATCCCTCCTGACCA 129295920 Query 22338 ACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAA 22397 || | | || ||||| || || ||| | || ||| |||||| | || || ||||| Sbjct 129295919 GCAGAGGTTGATCTTTGCTGGAAAGCAGCTGGAAGATGGGCGCACCCTGTCTGACTACAA 129295860 Query 22398 CATTCAAAAAGAATCCACC 22416 ||| || ||||| |||||| Sbjct 129295859 CATCCAGAAAGAGTCCACC 129295841 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419689117578565