Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Macaca_20fascicularis_20[refseq_20GCF_5F000364345.1_202013-06-12] 7,601 sequences; 2,946,843,737 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq1 95.1 2e-14 seq463 93.3 9e-14 seq186 91.5 3e-13 seq93 87.8 4e-12 >seq1 Length=227556264 Score = 95.1 bits (104), Expect = 2e-14 Identities = 65/72 (90%), Gaps = 1/72 (1%) Strand=Plus/Plus Query 142053 GTCTCTGTGGCGCAATGGAC-AGCGCGTTGGACTTCTAATCCAAAGGTTGCGGGTTCGAC 142111 |||||||||||||||||||| |||||| ||||||||||||||| ||||| ||||||||| Sbjct 92567700 GTCTCTGTGGCGCAATGGACGAGCGCGCTGGACTTCTAATCCAGAGGTTCCGGGTTCGAG 92567759 Query 142112 CCCCGCCAGAGA 142123 |||| |||||| Sbjct 92567760 TCCCGGCAGAGA 92567771 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| |||||||||||||||||| ||||||||||||| |||||||||||||||| Sbjct 104285733 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 104285674 Query 142564 CCCACATCGGGC 142575 ||||| | |||| Sbjct 104285673 CCCACGTTGGGC 104285662 Score = 87.8 bits (96), Expect = 4e-12 Identities = 69/83 (83%), Gaps = 0/83 (0%) Strand=Plus/Plus Query 142492 GGTGGTGAGATAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTC 142551 ||||||| | ||||| |||||||||||| ||||||| ||||||||||||| |||| Sbjct 172467431 GGTGGTGTAAAAGCCCAGTTAGCTCAGTCAGTAGAGCATGAGACTCTTAATCTCAGGGTC 172467490 Query 142552 GTGGGTTCGAGCCCCACATCGGG 142574 ||||||| |||||||||| ||| Sbjct 172467491 ATGGGTTCAAGCCCCACATTGGG 172467513 >seq463 Length=78541002 Score = 93.3 bits (102), Expect = 9e-14 Identities = 69/81 (85%), Gaps = 0/81 (0%) Strand=Plus/Plus Query 142495 GGTGAGATAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTG 142554 ||| || ||||||| |||||||||||||||||| ||||||||||||| ||||||| Sbjct 3458127 GGTAAGGGAGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTG 3458186 Query 142555 GGTTCGAGCCCCACATCGGGC 142575 |||||||||||||| | |||| Sbjct 3458187 GGTTCGAGCCCCACGTTGGGC 3458207 Score = 91.5 bits (100), Expect = 3e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 ||||||| |||||||||||||||||| ||||||||||||| ||||||||||||||| Sbjct 3445861 AGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 3445802 Query 142563 CCCCACATCGGGC 142575 |||||| | |||| Sbjct 3445801 CCCCACGTTGGGC 3445789 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| |||||||||||||||||| ||||||||||||| |||||||||||||||| Sbjct 3429427 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 3429368 Query 142564 CCCACATCGGGC 142575 ||||| | |||| Sbjct 3429367 CCCACGTTGGGC 3429356 Score = 87.8 bits (96), Expect = 4e-12 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 ||||||| |||||||||||||||||| ||||||||||||| |||||||||||| || Sbjct 3437168 AGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCAAG 3437227 Query 142563 CCCCACATCGGGC 142575 |||||| | |||| Sbjct 3437228 CCCCACGTTGGGC 3437240 >seq186 Length=181584905 Score = 91.5 bits (100), Expect = 3e-13 Identities = 65/75 (87%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| |||||||||||||||||| ||||||||||||| |||||||||||||||| Sbjct 181282880 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 181282821 Query 142564 CCCACATCGGGCAGA 142578 ||||| | |||| || Sbjct 181282820 CCCACGTTGGGCGGA 181282806 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| |||||||||||||||||| ||||||||||||| |||||||||||||||| Sbjct 181268466 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 181268525 Query 142564 CCCACATCGGGC 142575 ||||| | |||| Sbjct 181268526 CCCACGTTGGGC 181268537 >seq93 Length=170955103 Score = 87.8 bits (96), Expect = 4e-12 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 ||||||| |||||||||||||||||| |||||||||||| ||||||||||||||| Sbjct 144008499 AGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCCCAGGGTCGTGGGTTCGAG 144008440 Query 142563 CCCCACATCGGGC 142575 |||||| | |||| Sbjct 144008439 CCCCACGTTGGGC 144008427 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027736701222441