Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Macaca_20fascicularis_20[refseq_20GCF_5F000364345.1_202013-06-12] 7,601 sequences; 2,946,843,737 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq481 118 2e-21 seq323 87.8 3e-12 seq228 84.2 4e-11 >seq481 Length=152835861 Score = 118 bits (130), Expect = 2e-21 Identities = 384/585 (66%), Gaps = 16/585 (3%) Strand=Plus/Minus Query 42285 ATCGAGCACCAGGACATCTGGTCCATGTACAAGAAGGCGCAGTTCTCCAACTGGACCGCC 42344 |||||| |||| || |||||| ||||| ||||||||| | ||| |||||||||| Sbjct 42597620 ATCGAGTACCATGATATCTGGCAGATGTATAAGAAGGCGGAAGCTTCCTTCTGGACCGCC 42597561 Query 42345 GAGGAGATTGACCTGGCCAAGGACAC--GGCCGGCTGGGAGTCACTGT---CTGAGAACG 42399 |||||| | |||| | ||||||||| ||| |||||| | ||| | ||| | | Sbjct 42597560 GAGGAGGTGGACCCGTCCAAGGACATTTGGCA--CTGGGAATTCCTGAAGCCCGAGGA-G 42597504 Query 42400 AAAAGTTTTTCCTCAAAAACATACTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATG 42459 | | |||| || | | |||| ||||| || || ||| |||||||| |||| Sbjct 42597503 AGATATTTTATATCCCATG--TTCTGGTTTTCTTTGC-GCAAGTGATGGCATAGTAAATG 42597447 Query 42460 AGAACCTGGCCACCAGGTTCATGAAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACG 42519 ||| ||| | | | |||| || ||| || || ||||| |||| | Sbjct 42597446 CAAACTTGGTGGAGCGATGTAGCCAAGAAGTTCAGGTGACAGAAGCCCGCTGTTTCTGTG 42597387 Query 42520 GCTTCCAGATAGCCATAGAGAACGTGCACTCTGAGGTGTACGCCAAACTGCTCAACACGT 42579 ||||||| || ||||| || ||| | || |||| |||| || | |||| | Sbjct 42597386 GCTTCCAAATTGCCATGGAAAACATACATTCTGGAATGTATAGTTTCCTTATTGACACTT 42597327 Query 42580 ACATCCTGGATCCCGTCGAGCGTAACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCA 42639 |||| |||||| || | | | ||||| ||||| || |||||||| || Sbjct 42597326 ACATAAAAGATCCCAAAGAAAGGGAATTTCGCTTCAATGCCATTGAAACGATGCCTTGTG 42597267 Query 42640 TCAAGAAGAAGGCGGACTGGGCGCTCAACTGGATCGAGAGTCCCGACGCAACGTTCGGCG 42699 ||||||||||||| || ||||| | ||||||| | | | || || | || | Sbjct 42597266 TCAAGAAGAAGGCAGATTGGGCCTTGCACTGGATTGGGGACAAAGCAGCTACCTATGGGG 42597207 Query 42700 AGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCA 42759 | | | |||| |||| | || | || |||||||| |||| || || || || | Sbjct 42597206 AACGTGTTGTAGTCTTTGCTGCAGCGGAAGGCATCTT-TTCT--GGTTATTTTGCATCGA 42597150 Query 42760 TCTTCTGGCTCAAG-CAGAAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATC 42818 | |||||||||||| | ||| | |||||| || |||||||| || || ||||| || Sbjct 42597149 TATTCTGGCTCAAGAAACGAGGACT-GATGCCTGGCCTCACCTTTTCCAATGAACTTATT 42597091 Query 42819 AGCAGGGACGAGGGGCTGCATAGGGACTTTGCCTGCCTCCTGTTC 42863 || | || ||||| | || | || ||||| ||||| ||||| Sbjct 42597090 AGTGGAGATGAGGGTTTACACTGTGATTTTGCTTGCCTGATGTTC 42597046 >seq323 Length=111193037 Score = 87.8 bits (96), Expect = 3e-12 Identities = 96/125 (77%), Gaps = 2/125 (2%) Strand=Plus/Minus Query 42708 GTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGG 42767 ||||||||| |||| || || ||||||||||| || || | || || || || |||||| Sbjct 100856310 GTAGCCTTTGCCGCAGTGGAAGGCATCTTCTTTTCCGGTTCTTTTGCATCGATATTCTGG 100856251 Query 42768 CTCAAG-CAGAAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGA 42826 |||||| | ||| | |||||| || ||||| || || || ||||| |||||||| || Sbjct 100856250 CTCAAGAAACGAGGACT-GATGCCTGGCCTCACATTTTCCAATGAACTTATCAGCAGAGA 100856192 Query 42827 CGAGG 42831 |||| Sbjct 100856191 TGAGG 100856187 >seq228 Length=146850525 Score = 84.2 bits (92), Expect = 4e-11 Identities = 95/125 (76%), Gaps = 2/125 (2%) Strand=Plus/Minus Query 42706 TGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCT 42765 |||| |||||| | || || || || || |||||||| || | || || | || |||| Sbjct 103367794 TGGTGGCCTTTGCTGCTGTAGAAGGAATTTTCTTCTCAGGATCTTTTGCTGCTATATTCT 103367735 Query 42766 GGCTCAAGCAGA-AGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGG 42824 |||| ||| ||| |||| | ||||| |||||||| || || || |||||||||||||| Sbjct 103367734 GGCTAAAGAAGAGAGGTCTT-ATGCCAGGACTCACTTTTTCCAATGAACTCATCAGCAGA 103367676 Query 42825 GACGA 42829 || || Sbjct 103367675 GATGA 103367671 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944249475971760