Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Macaca_20fascicularis_20[refseq_20GCF_5F000364345.1_202013-06-12] 7,601 sequences; 2,946,843,737 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq428 131 2e-25 seq163 107 2e-18 seq375 102 9e-17 seq293 102 9e-17 seq93 96.9 4e-15 seq1 91.5 2e-13 seq313 89.7 6e-13 seq202 89.7 6e-13 seq51 89.7 6e-13 >seq428 Length=75711847 Score = 131 bits (144), Expect = 2e-25 Identities = 162/219 (74%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 41994 CGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCG 42053 |||||||||| |||| ||| ||| || || || ||||| || | ||||| || | Sbjct 71761754 CGCAACACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCTGAGAGAGTGCGGCCA 71761813 Query 42054 TCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTG 42113 || || ||||| || || || ||||| || ||||||||||| | ||| | | ||||||| Sbjct 71761814 TCTTCCAGCTGTTTGCCGGCAAATATCAGACGCTGCTGGTCAGGTGGGATACCCTCCTTG 71761873 Query 42114 TCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGAT 42172 | | ||| |||| | ||||| || | | ||||| || | || || |||| ||||| Sbjct 71761874 T-CTTGAATTTTGGCTTTGACATTCTCAATGGTGTCACTGGGCTCGACCTCGAGGGTGAT 71761932 Query 42173 GGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTTT 42211 |||||||||||| || ||||| |||||||| ||||| || Sbjct 71761933 GGTTTTGCCCGTGAGGGTCTTCACAAAGATCTGCATGTT 71761971 >seq163 Length=189454096 Score = 107 bits (118), Expect = 2e-18 Identities = 159/221 (72%), Gaps = 7/221 (3%) Strand=Plus/Minus Query 41994 CGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATC--AGCCAGAGTCCGCT 42051 |||||||||| |||| ||| ||| ||| || ||||| || || ||||| || Sbjct 87956263 CGCAACACCAGGTGCAGGGTGGACTC---TTGGATGTTGTAGTCTGAGAGAGAGTGCGGC 87956207 Query 42052 CGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCT 42111 | || || ||||| || | || ||||| || ||||||||||| | ||| | | ||||| Sbjct 87956206 CATCTTCCAGCTGTTTGCTGGCAAATATCAGACGCTGCTGGTCAGGTGGGATACCCTCCT 87956147 Query 42112 TGTCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTG 42170 |||| ||| |||| | ||||| || | | ||||| || | || || || | ||| Sbjct 87956146 TGTCT-TGAATTTTGGCTTTGACGTTCTCAATGGTGTCACTGGGCTCGACCTCAAGGGTG 87956088 Query 42171 ATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTTT 42211 ||||||||||||| || ||||| |||||||| ||||| || Sbjct 87956087 ATGGTTTTGCCCGGGAGGGTCTTCACAAAGATCTGCATGTT 87956047 >seq375 Length=80997621 Score = 102 bits (112), Expect = 9e-17 Identities = 163/234 (70%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 41981 ACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 42040 ||| ||||| | |||| |||| |||| || ||| || || || ||||| |||| Sbjct 16482683 ACCACCTCTCAGGCGCAGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAGTCAGA 16482742 Query 42041 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGG 42100 ||||| || | || || |||||||| || || || ||||| | ||||||||||| || Sbjct 16482743 AAGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCGGGGGG 16482802 Query 42101 CACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCAC 42160 | || ||||| || |||||| || | | | | ||||| || | ||||| Sbjct 16482803 AATGCCTTCCTTATCTTGGATTTTGGCCTTCACATTTTCGATGGTGTCACTGGGCTCCAC 16482862 Query 42161 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTTTCAC 42214 || | |||||||| ||||| || || ||||| || ||||| |||||||| || Sbjct 16482863 CTCAAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCATTTTGAC 16482916 Score = 96.9 bits (106), Expect = 4e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 41981 ACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 42040 ||| ||||| | |||| |||| |||| || |||||| || || ||||| |||| Sbjct 16482455 ACCACCTCTCAGGCGCAGGACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCAGA 16482514 Query 42041 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGG 42100 ||||| || | || || |||||||| || || || ||||| | ||||||||||| || Sbjct 16482515 AAGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCGGGAGG 16482574 Query 42101 CACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCAC 42160 | || || || ||| ||| || || | | | | ||||| || | ||||| Sbjct 16482575 GATGCCTTCTTTATCCTGGATCTTGGCCTTCACATTTTCGATGGTGTCACTGGGCTCCAC 16482634 Query 42161 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 || | |||||||| ||||| || || ||||| || ||||| ||||| Sbjct 16482635 TTCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 16482682 Score = 82.4 bits (90), Expect = 8e-11 Identities = 56/63 (89%), Gaps = 0/63 (0%) Strand=Plus/Plus Query 57020 AATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTATACTACCGAGGAT 57079 ||| |||||| ||||||||||||||||||||| |||||||||||||||||| | |||| Sbjct 8336479 AATGGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTATACTAACCAGGAG 8336538 Query 57080 TGA 57082 ||| Sbjct 8336539 TGA 8336541 Score = 82.4 bits (90), Expect = 8e-11 Identities = 147/215 (68%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 41994 CGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCG 42053 |||| |||| |||| || |||||| || || ||||| |||| ||||| || | Sbjct 16482240 CGCAGGACCAGGTGCAGGGTTGACTCCTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCA 16482299 Query 42054 TCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTG 42113 || || |||||||| || || || ||||| | ||||||||||| || | || || || Sbjct 16482300 TCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCGGGGGGGATGCCTTCTTTA 16482359 Query 42114 TCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATG 42173 || ||| || || | | | | ||||| || | ||||| || | |||||| Sbjct 16482360 TCTTGGATCTTGGCCTTCACATTTTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATG 16482419 Query 42174 GTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 || ||||| || || || || || ||||| ||||| Sbjct 16482420 GTCTTGCCGGTCAGGGTTTTCACGAAGATCTGCAT 16482454 >seq293 Length=137757926 Score = 102 bits (112), Expect = 9e-17 Identities = 161/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 41982 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 42041 || ||||| | || | ||| | |||| ||| ||| || || || ||||| |||| | Sbjct 129296496 CCACCTCTGAGGCGGAGCACGAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGAC 129296555 Query 42042 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGC 42101 || || ||| | || || |||||||| || || || || || | ||||||||||| || Sbjct 129296556 AGGGTGCGCCCATCTTCCAGCTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCGGGAGGA 129296615 Query 42102 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 42161 | || ||||| || ||| ||| |||| || | | ||||| || | || || Sbjct 129296616 ATGCCTTCCTTATCTTGGATCTTTGCCTTGACATTCTCAATGGTGTCACTGGGCTCAACC 129296675 Query 42162 TCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTTTC 42212 || | |||||||| ||||| || || ||||| || ||||| |||||| || Sbjct 129296676 TCAAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCATTGTC 129296726 Score = 89.7 bits (98), Expect = 6e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | |||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 99735411 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 99735352 Query 57067 TACTACCGAGGA 57078 ||||| |||||| Sbjct 99735351 TACTAACGAGGA 99735340 Score = 89.7 bits (98), Expect = 6e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | |||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 129310278 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 129310337 Query 57067 TACTACCGAGGA 57078 ||||| |||||| Sbjct 129310338 TACTAACGAGGA 129310349 Score = 89.7 bits (98), Expect = 6e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | |||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 129315336 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 129315395 Query 57067 TACTACCGAGGA 57078 ||||| |||||| Sbjct 129315396 TACTAACGAGGA 129315407 Score = 84.2 bits (92), Expect = 2e-11 Identities = 64/76 (84%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 57006 TCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 57065 ||||| || | | ||| |||||| ||||||||||||||||||||| ||||| |||||| Sbjct 102210030 TCTCCCCGTCGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACT 102209971 Query 57066 ATACTACCGAGGATTG 57081 |||||| |||||| || Sbjct 102209970 ATACTAACGAGGAGTG 102209955 >seq93 Length=170955103 Score = 96.9 bits (106), Expect = 4e-15 Identities = 67/76 (88%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 57003 TTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACC 57062 |||||||| || | | |||||||||| ||||||||||||||||||||| ||||||||| Sbjct 143330212 TTTTCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACC 143330271 Query 57063 ACTATACTACCGAGGA 57078 ||||||||| |||||| Sbjct 143330272 ACTATACTAACGAGGA 143330287 Score = 93.3 bits (102), Expect = 5e-14 Identities = 66/76 (87%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 57003 TTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACC 57062 || ||||| || | | |||||||||| ||||||||||||||||||||| ||||||||| Sbjct 143248236 TTGTCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACC 143248177 Query 57063 ACTATACTACCGAGGA 57078 ||||||||| |||||| Sbjct 143248176 ACTATACTAACGAGGA 143248161 Score = 89.7 bits (98), Expect = 6e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | |||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 143356380 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 143356439 Query 57067 TACTACCGAGGA 57078 ||||| |||||| Sbjct 143356440 TACTAACGAGGA 143356451 >seq1 Length=227556264 Score = 91.5 bits (100), Expect = 2e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 57006 TCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 57065 ||||| || | | |||||||||| ||||||||||||||||||||| |||||||||||| Sbjct 90153568 TCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACT 90153627 Query 57066 ATACTACCGAGGA 57078 |||||| |||||| Sbjct 90153628 ATACTAACGAGGA 90153640 Score = 89.7 bits (98), Expect = 6e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | |||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 90218712 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 90218653 Query 57067 TACTACCGAGGA 57078 ||||| |||||| Sbjct 90218652 TACTAACGAGGA 90218641 >seq313 Length=132586672 Score = 89.7 bits (98), Expect = 6e-13 Identities = 55/59 (93%), Gaps = 0/59 (0%) Strand=Plus/Minus Query 57020 AATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTATACTACCGAGGA 57078 |||||||||| ||||||||||||||||||||| |||||||||||||||||| |||||| Sbjct 34791563 AATCGAACCCGGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTATACTAACGAGGA 34791505 >seq202 Length=171882078 Score = 89.7 bits (98), Expect = 6e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | |||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 98637848 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 98637789 Query 57067 TACTACCGAGGA 57078 ||||| |||||| Sbjct 98637788 TACTAACGAGGA 98637777 Score = 87.8 bits (96), Expect = 2e-12 Identities = 138/194 (71%), Gaps = 3/194 (2%) Strand=Plus/Minus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 ||| || || || ||||| | | ||||| || | || || ||||| || ||||| | Sbjct 122414652 CTCTTTCTGGATGTTGTAGCCTGAGAGAGTGCGGCCATCCTCCAGCTGTTTCCCAGCAAG 122414593 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCA-CGCTCTCCTTGTCCATGATTTTTTG-TTTGAGC 42134 ||| || ||||||||||| | ||| | | |||||||| | ||| |||| | ||||| Sbjct 122414592 TATCAGACGCTGCTGGTCAGGTGGGATATCCCTCCTTGT-CTTGAATTTTGGCTTTGACA 122414534 Query 42135 GTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTT 42194 || | ||||| || | || | || | |||||||| |||||||| || ||||| Sbjct 122414533 TTCTAAATGGTGTCACTGGGCTCAATCTCAAGGGTGATGGTCTTGCCCGTGAGGGTCTTC 122414474 Query 42195 ACAAAGATTTGCAT 42208 |||||||| ||||| Sbjct 122414473 ACAAAGATCTGCAT 122414460 >seq51 Length=192294377 Score = 89.7 bits (98), Expect = 6e-13 Identities = 137/193 (71%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 ||| || || || ||| | || | ||||| || | || || ||||| || || || || Sbjct 95087535 CTCTTTCTGGATGTTGCAGTCTGAGAGAGTGCGGCCATCCTCCAGCTGTTTGCCCGCAAA 95087476 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCG 42135 ||| || ||||||||||| ||| | || ||||||| | ||| |||| | |||| Sbjct 95087475 TATCAGACGCTGCTGGTCAAGTGGGATGCCCTCCTTG-GCTTGAATTTTGGCCTTGACAT 95087417 Query 42136 TCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 42195 || | ||||| || | || || |||| |||||||| ||||| || || ||||| | Sbjct 95087416 TCTCAGTGGTGTCACTGGGCTCGACCTCGAGGGTGATGGTCTTGCCTGTGAGGGTCTTCA 95087357 Query 42196 CAAAGATTTGCAT 42208 ||||||| ||||| Sbjct 95087356 CAAAGATCTGCAT 95087344 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 543161187993840