Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Macaca_20fascicularis_20[refseq_20GCF_5F000364345.1_202013-06-12] 7,601 sequences; 2,946,843,737 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq375 145 8e-30 seq293 145 8e-30 seq202 111 2e-19 seq428 109 5e-19 seq1 100 3e-16 seq228 96.9 3e-15 seq355 93.3 4e-14 seq313 93.3 4e-14 seq481 89.7 5e-13 seq274 87.8 2e-12 seq51 84.2 2e-11 >seq375 Length=80997621 Score = 145 bits (160), Expect = 8e-30 Identities = 152/200 (76%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 ||||| ||||| || |||||||| || | | ||||| | ||||| ||||||||||| Sbjct 16482714 GTCGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCT 16482773 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 ||| | ||||||| |||||||||||| ||||| ||||| || ||||| ||||| ||| Sbjct 16482774 GCAAAGATGAGCCTCTGCTGGTCGGGGGGAATGCCTTCCTTATCTTGGATTTTGGCCTTC 16482833 Query 64367 ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTT 64426 ||| || | || |||| || ||||| || | || | |||||||||||||| || Sbjct 16482834 ACATTTTCGATGGTGTCACTGGGCTCCACCTCAAGGGTGATGGTCTTGCCGGTCAGGGTC 16482893 Query 64427 TTTACGAAAATTTGCATTTT 64446 || ||||| || |||||||| Sbjct 16482894 TTCACGAAGATCTGCATTTT 16482913 Score = 134 bits (148), Expect = 1e-26 Identities = 148/197 (75%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 ||||| || || || |||||||| || | | ||||| | ||||| ||||||||||| Sbjct 16482486 GTCGACTCCTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCT 16482545 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 ||| | ||||||| ||||||||||||||| || |||||||| || || || || ||| Sbjct 16482546 GCAAAGATGAGCCTCTGCTGGTCGGGAGGGATGCCTTCTTTATCCTGGATCTTGGCCTTC 16482605 Query 64367 ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTT 64426 ||| || | || |||| || |||||||| | || | |||||||||||||| || Sbjct 16482606 ACATTTTCGATGGTGTCACTGGGCTCCACTTCCAGGGTGATGGTCTTGCCGGTCAGGGTC 16482665 Query 64427 TTTACGAAAATTTGCAT 64443 || ||||| || ||||| Sbjct 16482666 TTCACGAAGATCTGCAT 16482682 Score = 131 bits (144), Expect = 2e-25 Identities = 147/197 (75%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 || || || || || |||||||| || | | ||||| | ||||| ||||||||||| Sbjct 16482258 GTTGACTCCTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCT 16482317 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 ||| | ||||||| |||||||||||| || || |||||||| ||||| || || ||| Sbjct 16482318 GCAAAGATGAGCCTCTGCTGGTCGGGGGGGATGCCTTCTTTATCTTGGATCTTGGCCTTC 16482377 Query 64367 ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTT 64426 ||| || | || |||| || ||||| || | || | |||||||||||||| ||| Sbjct 16482378 ACATTTTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCGGTCAGGGTT 16482437 Query 64427 TTTACGAAAATTTGCAT 64443 || ||||| || ||||| Sbjct 16482438 TTCACGAAGATCTGCAT 16482454 >seq293 Length=137757926 Score = 145 bits (160), Expect = 8e-30 Identities = 160/213 (75%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 ||||| || || | || || ||||| || |||||||| || | | ||||||| | ||| Sbjct 129296511 AGCACGAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCT 129296570 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || |||||||| |||||| | || |||| |||||||||||||||||| ||||| || ||| Sbjct 129296571 TCCAGCTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCGGGAGGAATGCCTTCCTTATCT 129296630 Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411 || || ||| ||| ||| ||| | || |||| || || || || | || | |||| Sbjct 129296631 TGGATCTTTGCCTTGACATTCTCAATGGTGTCACTGGGCTCAACCTCAAGGGTGATGGTC 129296690 Query 64412 TTGCCGGTCAAAGTTTTTACGAAAATTTGCATT 64444 ||||| |||| || || ||||| || |||||| Sbjct 129296691 TTGCCAGTCAGGGTCTTCACGAAGATCTGCATT 129296723 >seq202 Length=171882078 Score = 111 bits (122), Expect = 2e-19 Identities = 163/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| || || | ||| | ||| ||||||| || || || |||||||| ||||| || | Sbjct 129945899 ACCACCACGAAGTCTCAACACAAGATGAAGAGTAGACTCCTTTTGAATATTGTAGTCAGA 129945840 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 | || || | ||||| || |||||||| ||| | || || | ||||| || ||||| Sbjct 129945839 CAAAGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGG 129945780 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCAC 64395 ||||||||| || || || || || ||||||| || | |||| || || || Sbjct 129945779 AATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATCATATCCGAGGGTTCAAC 129945720 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATTTT 64446 || | || | |||||| || || | ||||| |||||||| |||||||| Sbjct 129945719 CTCGAGGGTGATGGTCTTCCCCGTAAGGGTTTTCACGAAAATCTGCATTTT 129945669 >seq428 Length=75711847 Score = 109 bits (120), Expect = 5e-19 Identities = 154/214 (72%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 64234 CACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTC 64293 ||| || || | || || ||||| || |||||||| |||| || ||||| | ||||| Sbjct 71761759 CACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCTGAGAGAGTGCGGCCATCTTC 71761818 Query 64294 AAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTG 64353 ||||| ||||||||| | || || ||||||||||| || || || || || || ||||| Sbjct 71761819 CAGCTGTTTGCCGGCAAATATCAGACGCTGCTGGTCAGGTGGGATACCCTCCTTGTCTTG 71761878 Query 64354 TATTTTTTGCTTT-ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCT 64412 | |||| ||||| ||| ||| | || |||| || || || || | || | ||| | Sbjct 71761879 -AATTTTGGCTTTGACATTCTCAATGGTGTCACTGGGCTCGACCTCGAGGGTGATGGTTT 71761937 Query 64413 TGCCGGTCAAAGTTTTTACGAAAATTTGCATTTT 64446 |||| || | || || || || || ||||| || Sbjct 71761938 TGCCCGTGAGGGTCTTCACAAAGATCTGCATGTT 71761971 >seq1 Length=227556264 Score = 100 bits (110), Expect = 3e-16 Identities = 142/200 (71%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 ||||||||||| || |||||||| || | | ||||| | ||||| |||||| |||| Sbjct 76496970 GTCGATTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCATCTTCCAGCTGCATGCCT 76497029 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 ||| | ||||||| |||| ||||||| || ||||| || || || || || ||| Sbjct 76497030 GCAAAGATGAGCCTCTGCGGGTCGGGGCAGATGCCTTCCTTATCCTGGATATTGGCCTTC 76497089 Query 64367 ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTT 64426 ||| | | || |||| || ||||| || | || | ||||||| | |||| || Sbjct 76497090 ACATTTTAGATGGTGTCACTGGGCTCCACATCAAGGGTGATGGTCTTGTCAGTCAGGGTC 76497149 Query 64427 TTTACGAAAATTTGCATTTT 64446 || ||||| | |||||||| Sbjct 76497150 TTCACGAAGACCTGCATTTT 76497169 >seq228 Length=146850525 Score = 96.9 bits (106), Expect = 3e-15 Identities = 160/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| || || | ||| | ||| ||||||| || || || |||||||| ||||| || | Sbjct 76171941 ACCACCACGAAGTCTCAACACAAGATGAAGAGTAGACTCCTTTTGAATATTGTAGTCAGA 76172000 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 | || || | ||||| || |||||||| ||| | || || | ||| | | ||||| Sbjct 76172001 CAAAGTACGTCCTTCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCAGAGCAGGAGG 76172060 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCAC 64395 ||||||||| || || || || || ||||||| || | |||| || || || Sbjct 76172061 AATTCCTTCCTTCTCCTGGATCTTGGCCTTTACATTTTCTATCGTATTCGAGGGTTCAAC 76172120 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATTTT 64446 || | || | |||||| || || | ||||| || ||||| |||||||| Sbjct 76172121 CTCGAGGGTGATGGTCTTCCCCGTAAGGGTTTTCACAAAAATCTGCATTTT 76172171 >seq355 Length=112612857 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| || || | ||| | ||| ||||||| || || || |||||||| ||||| || | Sbjct 67551063 ACCACCACGAAGTCTCAACACGAGATGAAGAGTAGACTCCTTTTGAATATTGTAGTCAGA 67551122 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 | || || | ||||| || |||||||| ||| | || || | ||||| || ||||| Sbjct 67551123 CAAAGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGG 67551182 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCAC 64395 ||||||||| || || || || | ||||||| | | ||||| || || | Sbjct 67551183 AATTCCTTCCTTATCCTGGATCTCGGCCTTTACATTTTATATCGTATCTGAGGGTTCAGC 67551242 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATTTT 64446 || | || | |||||| || | | ||||| | |||||| |||||||| Sbjct 67551243 CTCGAGGGTGATGGTCTTCCCCATAAGGGTTTTCATGAAAATCTGCATTTT 67551293 Score = 87.8 bits (96), Expect = 2e-12 Identities = 96/128 (75%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 || || || || || || || | |||||| |||||||| |||| || |||| | || Sbjct 56763044 AGAACCAGGTGCATGGTGGACTGTTTTTGGATGTTGTAGTCTGAGAGAGTGCAGCCATCC 56763103 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || ||||||||||| ||| | || || | ||||||||| || || || || ||||| ||| Sbjct 56763104 TCCAGCTGCTTGCCAGCAAATATCAGACACTGCTGGTCAGGTGGGATACCCTCTTTGTCT 56763163 Query 64352 TGTATTTT 64359 || ||||| Sbjct 56763164 TGAATTTT 56763171 >seq313 Length=132586672 Score = 93.3 bits (102), Expect = 4e-14 Identities = 140/198 (71%), Gaps = 1/198 (1%) Strand=Plus/Plus Query 64250 GATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCA 64309 || ||||| ||||||||||| || | | |||| | ||||| ||| ||||||| || Sbjct 37421162 GACTCTTTCTGAATGTTGTAGTCAGAAAGAGTGCAGCCATCTTCTAGCCGCTTGCCTACA 37421221 Query 64310 TAAATGAGCCGCTGCTGGTC-GGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTTAC 64368 | ||||| | ||||||||| | | || || |||||||| || || || || ||| || Sbjct 37421222 AAGATGAGACTCTGCTGGTCAGTGGGGGATGCCTTCTTTATCCTGGATCTTGGCCTTCAC 37421281 Query 64369 AACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTTTT 64428 | | | | |||| || ||||| || | | | ||||||||||| || ||||| Sbjct 37421282 ATTTTGGAGGATGTCACTGGGCTCCACCTCCAGGGAGATGGTCTTGCCGGGCAGGGTTTT 37421341 Query 64429 TACGAAAATTTGCATTTT 64446 | ||| ||||||||||| Sbjct 37421342 CAGGAAGATTTGCATTTT 37421359 >seq481 Length=152835861 Score = 89.7 bits (98), Expect = 5e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 64238 AGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGC 64297 ||||||| || | || |||||||||||| | || | | || || ||||||| || Sbjct 1378324 AGATGAAGAGTAGGCTCCTTTTGAATGTTGCAGTCAGACAAAGTACGTCCGTCTTCCAGT 1378265 Query 64298 TGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATT 64357 |||| ||| ||| | || || | ||||| || |||||||||||||| || || || || Sbjct 1378264 TGCTCGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGGAATTCCTTCCTTATCCTGGATC 1378205 Query 64358 TTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCG 64417 || ||||||| || | ||||| || || | || | || | ||||| || Sbjct 1378204 TTGGCCTTTACATTTTCTGCCGTATCTGAGGGTTCAATCTCAAGGGTGATAGTCTTCCCC 1378145 Query 64418 GTCAAAGTTTTTACGAAAATTTGCATTTT 64446 | | ||||| |||||||| |||||||| Sbjct 1378144 CTTAGGGTTTTCACGAAAATCTGCATTTT 1378116 Score = 82.4 bits (90), Expect = 8e-11 Identities = 113/158 (72%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 64226 AATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGC 64285 ||||| | ||| |||||| || || |||| |||| |||||||||| | | || || Sbjct 4592486 AATCTCAACACATGATGAAGAGTGGACTCTTCTTGAGTGTTGTAATCAGACAAAGTACGT 4592427 Query 64286 GCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCT 64345 | ||||| || |||| | | ||| | || || | |||||||| |||||||||||||| Sbjct 4592426 CCATCTTCCAGTTGCTCGACAGCAAAGATCAGTCTTTGCTGGTCAGGAGGAATTCCTTCC 4592367 Query 64346 TTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATC 64383 || || || | || ||||||| || | |||||| Sbjct 4592366 TTATCCTGGGTCTTGGCCTTTACATTTTCTATTGTATC 4592329 >seq274 Length=96509753 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/230 (68%), Gaps = 11/230 (5%) Strand=Plus/Minus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| || || | ||| | ||| ||||||| || || || |||||||||||||| || | Sbjct 68626132 ACCACCACGAAGTCTCAACACAAGATGAAGAGTAGACTCCTTTTGAATGTTGTAGTCAGA 68626073 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 | ||||| | |||||||| ||| | || || | ||||| || ||||| Sbjct 68626072 CA-----------TCTTCCAATTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGG 68626024 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCAC 64395 ||||||||| || || || || || ||||||| || ||| | || || || Sbjct 68626023 AATTCCTTCCTTATCCTGGATATTGGCCTTTACATTTTCTGTTGTGTTCAAGGGTTCAAC 68625964 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATTT 64445 || | || | |||||| || || | ||||| |||||||| ||||||| Sbjct 68625963 CTCAAGGGTGATGGTCTTCCCTGTAAGGGTTTTCACGAAAATCTGCATTT 68625914 >seq51 Length=192294377 Score = 84.2 bits (92), Expect = 2e-11 Identities = 135/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 64250 GATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCA 64309 || ||||| || |||||| | |||| || ||||| | || || ||||| ||||| ||| Sbjct 95087537 GACTCTTTCTGGATGTTGCAGTCTGAGAGAGTGCGGCCATCCTCCAGCTGTTTGCCCGCA 95087478 Query 64310 TAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTTACA 64369 | || || ||||||||||| | || || || || || |||| ||||| ||| ||| Sbjct 95087477 AATATCAGACGCTGCTGGTCAAGTGGGATGCCCTCCTTGGCTTGAATTTTGGCCTTGACA 95087418 Query 64370 ACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTT 64429 ||| || |||| || || || || | || | ||||||||| || | || || Sbjct 95087417 TTCTCAGTGGTGTCACTGGGCTCGACCTCGAGGGTGATGGTCTTGCCTGTGAGGGTCTTC 95087358 Query 64430 ACGAAAATTTGCAT 64443 || || || ||||| Sbjct 95087357 ACAAAGATCTGCAT 95087344 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499597327498440