Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Macaca_20fascicularis_20[refseq_20GCF_5F000364345.1_202013-06-12] 7,601 sequences; 2,946,843,737 total letters Query= NC_011423.1 Length=111724 Score E Sequences producing significant alignments: (Bits) Value seq428 120 2e-22 seq202 95.1 9e-15 seq274 91.5 1e-13 seq228 86.0 4e-12 >seq428 Length=75711847 Score = 120 bits (132), Expect = 2e-22 Identities = 167/234 (71%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 14948 TGCCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGC 15007 |||||||||||| | || || | || ||||| || ||||| || |||||||| || Sbjct 71761740 TGCCACCTCGCAGGCGCAACACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCTG 71761799 Query 15008 TGAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTG 15067 |||| | | | ||||| | |||||||| || |||||| |||||| ||||| || Sbjct 71761800 AGAGAGTGCGGCCATCTTCCAGCTGTTTGCCGGCAAATATCAGACGCTGCTGGTCAGGTG 71761859 Query 15068 GAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTA 15127 | || || |||||||| ||||||| ||| ||| | || || || || || || | Sbjct 71761860 GGATACCCTCCTTGTCTTGAATTTTGGCTTTGACATTCTCAATGGTGTCACTGGGCTCGA 71761919 Query 15128 CGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATTTG 15181 | || | ||| |||||||| || || || || || ||||| || ||||| |||| Sbjct 71761920 CCTCGAGGGTGATGGTTTTGCCCGTGAGGGTCTTCACAAAGATCTGCATGTTTG 71761973 >seq202 Length=171882078 Score = 95.1 bits (104), Expect = 9e-15 Identities = 160/232 (69%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||| || | ||| || || | |||||| ||||| || ||||| || ||||| || Sbjct 129945898 CCACCACGAAGTCTCAACACAAGATGAAGAGTAGACTCCTTTTGAATATTGTAGTCAGAC 129945839 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 | | | | | ||||| | ||| |||||||| | |||| | || || || ||| Sbjct 129945838 AAAGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGGA 129945779 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 ||||||||||| || || ||| |||||| ||||||| |||| ||| || Sbjct 129945778 ATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATCATATCCGAGGGTTCAACC 129945719 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATTTG 15181 || | ||| ||||| || || || || ||||| || ||||| ||||| |||| Sbjct 129945718 TCGAGGGTGATGGTCTTCCCCGTAAGGGTTTTCACGAAAATCTGCATTTTTG 129945667 >seq274 Length=96509753 Score = 91.5 bits (100), Expect = 1e-13 Identities = 156/227 (69%), Gaps = 11/227 (5%) Strand=Plus/Minus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||| || | ||| || || | |||||| ||||| || ||||| |||||||| || Sbjct 68626131 CCACCACGAAGTCTCAACACAAGATGAAGAGTAGACTCCTTTTGAATGTTGTAGTC---- 68626076 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 ||| | ||||| ||||| |||||||| | |||| | || || || ||| Sbjct 68626075 AGA-------CATCTTCCAATTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGGA 68626023 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 ||||||||||| || || ||| |||||| ||||| | || | ||| || Sbjct 68626022 ATTCCTTCCTTATCCTGGATATTGGCCTTTACATTTTCTGTTGTGTTCAAGGGTTCAACC 68625963 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || | ||| ||||| || ||||| || ||||| || ||||| ||||| Sbjct 68625962 TCAAGGGTGATGGTCTTCCCTGTAAGGGTTTTCACGAAAATCTGCAT 68625916 >seq228 Length=146850525 Score = 86.0 bits (94), Expect = 4e-12 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||| || | ||| || || | |||||| ||||| || ||||| || ||||| || Sbjct 76171942 CCACCACGAAGTCTCAACACAAGATGAAGAGTAGACTCCTTTTGAATATTGTAGTCAGAC 76172001 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 | | | | | ||||| | ||| |||||||| | |||| | || | | ||| Sbjct 76172002 AAAGTACGTCCTTCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCAGAGCAGGAGGA 76172061 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 ||||||||||| || || ||| |||||| ||||||| |||| ||| || Sbjct 76172062 ATTCCTTCCTTCTCCTGGATCTTGGCCTTTACATTTTCTATCGTATTCGAGGGTTCAACC 76172121 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATT 15179 || | ||| ||||| || || || || ||||| |||||||| ||||| || Sbjct 76172122 TCGAGGGTGATGGTCTTCCCCGTAAGGGTTTTCACAAAAATCTGCATTTT 76172171 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 357358892210285