Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Macaca_20fascicularis_20[refseq_20GCF_5F000364345.1_202013-06-12] 7,601 sequences; 2,946,843,737 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq293 116 4e-21 seq428 113 4e-20 seq202 104 2e-17 seq228 95.1 1e-14 seq375 91.5 1e-13 seq355 87.8 2e-12 >seq293 Length=137757926 Score = 116 bits (128), Expect = 4e-21 Identities = 144/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || |||||||| || || ||||| || || ||||| ||| || ||||| |||||| Sbjct 129295614 GTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTCCAGCTGCTTTCCA 129295673 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 || ||||||| | |||||| || ||||| ||||||||||||||| ||| || |||| Sbjct 129295674 GCAAAGATCAACCTCTGCTGGTCAGGAGGGATGCCCTCCTTGTCCTGGATCTTTGCCTTG 129295733 Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTT 127096 | | ||| | ||||| | ||| || |||| ||| | || ||||| ||||| || Sbjct 129295734 ACATTTTCAATAGTGTCACTGGGCTCCACCTCGAGGGTGATGGTCTTGCCAGTCAGGGTC 129295793 Query 127097 TTTACAAAAATCTGCAT 127113 || || || |||||||| Sbjct 129295794 TTCACGAAGATCTGCAT 129295810 Score = 116 bits (128), Expect = 4e-21 Identities = 144/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || |||||||| || || ||||| || || ||||| ||| || ||||| |||||| Sbjct 129295842 GTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTCCAGCTGCTTTCCA 129295901 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 || ||||||| | |||||| || ||||| ||||||||||||||| ||| || |||| Sbjct 129295902 GCAAAGATCAACCTCTGCTGGTCAGGAGGGATGCCCTCCTTGTCCTGGATCTTTGCCTTG 129295961 Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTT 127096 | | ||| | ||||| | |||||| || | ||| | || ||||| ||||| || Sbjct 129295962 ACATTTTCAATAGTGTCACTGGGCTCGACCTCAAGGGTGATGGTCTTGCCAGTCAGGGTC 129296021 Query 127097 TTTACAAAAATCTGCAT 127113 || || || |||||||| Sbjct 129296022 TTCACGAAGATCTGCAT 129296038 Score = 116 bits (128), Expect = 4e-21 Identities = 154/211 (73%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 126904 CACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTC 126963 ||||| || | ||||||||||| || || ||||| || || ||||| ||| || Sbjct 129296285 CACCAGGTGCAGGGTAGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGTCCATCTTC 129296344 Query 126964 TAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGT 127023 |||||||| || || ||||||| | |||||| || ||||| ||||| |||||||| Sbjct 129296345 CAGCTGTTTCCCGGCAAAGATCAACCTCTGCTGGTCAGGAGGGATGCCTTCCTTGTCTTG 129296404 Query 127024 GATTTTCTGC-TTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTT 127082 ||| || ||| |||| | |||| |||||| | |||||| |||| ||| | || | Sbjct 129296405 GATCTT-TGCTTTGACGTTCTCGATGGTGTCACTGGGCTCGACCTCGAGGGTGATGGTCT 129296463 Query 127083 TGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 |||| ||||| || || || || |||||||| Sbjct 129296464 TGCCAGTCAGGGTCTTCACGAAGATCTGCAT 129296494 >seq428 Length=75711847 Score = 113 bits (124), Expect = 4e-20 Identities = 164/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | |||||||||| || | || |||||||| || || ||||| || Sbjct 71761742 CCACCTCGCAGGCGCAACACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCTGAG 71761801 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | ||||| ||| || |||||||| || || | |||| |||||||| || || || Sbjct 71761802 AGAGTGCGGCCATCTTCCAGCTGTTTGCCGGCAAATATCAGACGCTGCTGGTCAGGTGGG 71761861 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGC-TTGAGTTGTTCGACGGTGTCCGTACTCTCGAC 127065 || |||||||||| | ||| ||| || |||| | || | |||||| | |||||| Sbjct 71761862 ATACCCTCCTTGT-CTTGAATTTTGGCTTTGACATTCTCAATGGTGTCACTGGGCTCGAC 71761920 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114 |||| ||| | |||||||| || || || || ||||| ||||||||| Sbjct 71761921 CTCGAGGGTGATGGTTTTGCCCGTGAGGGTCTTCACAAAGATCTGCATG 71761969 >seq202 Length=171882078 Score = 104 bits (114), Expect = 2e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 126884 GCTCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCG 126943 || ||||| || | || |||||| | ||| | |||||||| |||||||||||||| || Sbjct 129945901 GCACCACCACGAAGTCTCAACACAAGATGAAGAGTAGACTCCTTTTGAATATTGTAGTCA 129945842 Query 126944 CCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGA 127003 || || || ||| || || || || ||||| |||||| || |||||||| ||| Sbjct 129945841 GACAAAGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGA 129945782 Query 127004 GGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCG 127063 || || || ||||| ||| ||| || ||| | | ||| | | |||| || Sbjct 129945781 GGAATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATCATATCCGAGGGTTCA 129945722 Query 127064 ACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || |||| ||| | || || || || || ||||| || ||||||||||| Sbjct 129945721 ACCTCGAGGGTGATGGTCTTCCCCGTAAGGGTTTTCACGAAAATCTGCAT 129945672 >seq228 Length=146850525 Score = 95.1 bits (104), Expect = 1e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 126884 GCTCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCG 126943 || ||||| || | || |||||| | ||| | |||||||| |||||||||||||| || Sbjct 76171939 GCACCACCACGAAGTCTCAACACAAGATGAAGAGTAGACTCCTTTTGAATATTGTAGTCA 76171998 Query 126944 CCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGA 127003 || || || || || || || || ||||| |||||| || ||| || | ||| Sbjct 76171999 GACAAAGTACGTCCTTCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCAGAGCAGGA 76172058 Query 127004 GGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCG 127063 || || || ||||| ||| ||| || ||| | | ||| | || | || || Sbjct 76172059 GGAATTCCTTCCTTCTCCTGGATCTTGGCCTTTACATTTTCTATCGTATTCGAGGGTTCA 76172118 Query 127064 ACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || |||| ||| | || || || || || ||||| |||||||||||||| Sbjct 76172119 ACCTCGAGGGTGATGGTCTTCCCCGTAAGGGTTTTCACAAAAATCTGCAT 76172168 >seq375 Length=80997621 Score = 91.5 bits (100), Expect = 1e-13 Identities = 149/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 126899 CGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAA 126958 |||| |||| || | || ||||| || || || ||||| || | ||||| | Sbjct 16482468 CGCAGGACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCA 16482527 Query 126959 TCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTG 127018 || || ||||| || || || |||| | | |||||| |||||||| ||||| || || Sbjct 16482528 TCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCGGGAGGGATGCCTTCTTTA 16482587 Query 127019 TCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACC 127078 ||| ||| || ||| | | ||||| |||||| | ||| ||||| | ||| | Sbjct 16482588 TCCTGGATCTTGGCCTTCACATTTTCGATGGTGTCACTGGGCTCCACTTCCAGGGTGATG 16482647 Query 127079 GTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || ||||||||||| || || || || |||||||| Sbjct 16482648 GTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 16482682 Score = 91.5 bits (100), Expect = 1e-13 Identities = 149/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 126899 CGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAA 126958 |||| |||| || | || |||||||| || || ||||| || | ||||| | Sbjct 16482696 CGCAGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCA 16482755 Query 126959 TCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTG 127018 || || ||||| || || || |||| | | |||||| ||||| || ||||| ||||| Sbjct 16482756 TCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCGGGGGGAATGCCTTCCTTA 16482815 Query 127019 TCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACC 127078 || |||||| ||| | | ||||| |||||| | ||| || || | ||| | Sbjct 16482816 TCTTGGATTTTGGCCTTCACATTTTCGATGGTGTCACTGGGCTCCACCTCAAGGGTGATG 16482875 Query 127079 GTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || ||||||||||| || || || || |||||||| Sbjct 16482876 GTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 16482910 Score = 82.4 bits (90), Expect = 7e-11 Identities = 154/226 (68%), Gaps = 4/226 (2%) Strand=Plus/Minus Query 126888 CACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCA 126947 |||| || | || ||| || ||||| | ||||||||||||||||||||||| | || Sbjct 10429453 CACCACGAAGTCTCAATACAAAATGAAGAGTAGACTCTTTTTGAATATTGTAGT----CA 10429398 Query 126948 TCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTA 127007 || || ||| || || || || ||||| ||||| || |||| || | ||||| | Sbjct 10429397 AAGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCGGTCTCTGCCGACCAGGAGGAA 10429338 Query 127008 TGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTT 127067 | || ||||| || ||| || || | | ||| | ||||||| || | | Sbjct 10429337 TTCCTTCCTTAACCTGGATCTTGGCCTATACATTTTCTATTGTGTCCGAGGGTTCACCCT 10429278 Query 127068 CGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 ||| ||| | || || || || || ||| | || ||||||||||| Sbjct 10429277 CGAGGGTGATGGTCTTCCCTGTAAGGGTTATCACGAAAATCTGCAT 10429232 Score = 82.4 bits (90), Expect = 7e-11 Identities = 147/215 (68%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 126899 CGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAA 126958 |||| |||| || | || ||||| || || || ||||| || | ||||| | Sbjct 16482240 CGCAGGACCAGGTGCAGGGTTGACTCCTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCA 16482299 Query 126959 TCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTG 127018 || || ||||| || || || |||| | | |||||| ||||| || ||||| || || Sbjct 16482300 TCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCGGGGGGGATGCCTTCTTTA 16482359 Query 127019 TCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACC 127078 || ||| || ||| | | ||||| |||||| | ||| || || | ||| | Sbjct 16482360 TCTTGGATCTTGGCCTTCACATTTTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATG 16482419 Query 127079 GTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || ||||||||||| ||||| || || |||||||| Sbjct 16482420 GTCTTGCCGGTCAGGGTTTTCACGAAGATCTGCAT 16482454 >seq355 Length=112612857 Score = 87.8 bits (96), Expect = 2e-12 Identities = 102/138 (74%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 126884 GCTCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCG 126943 || ||||| || | || |||||| | ||| | |||||||| |||||||||||||| || Sbjct 67551061 GCACCACCACGAAGTCTCAACACGAGATGAAGAGTAGACTCCTTTTGAATATTGTAGTCA 67551120 Query 126944 CCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGA 127003 || || || ||| || || || || ||||| |||||| || |||||||| ||| Sbjct 67551121 GACAAAGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGA 67551180 Query 127004 GGTATGCCCTCCTTGTCC 127021 || || || ||||| ||| Sbjct 67551181 GGAATTCCTTCCTTATCC 67551198 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475455621480240