Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Macaca_20fascicularis_20[refseq_20GCF_5F000364345.1_202013-06-12] 7,601 sequences; 2,946,843,737 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq428 136 4e-27 seq375 122 1e-22 seq293 118 1e-21 seq163 111 2e-19 seq51 100 3e-16 seq228 87.8 2e-12 seq202 87.8 2e-12 >seq428 Length=75711847 Score = 136 bits (150), Expect = 4e-27 Identities = 172/235 (73%), Gaps = 1/235 (0%) Strand=Plus/Plus Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424 |||| |||| | ||||||||||| |||| || ||| || ||||| |||||||| | Sbjct 71761740 TGCCACCTCGCAGGCGCAACACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCTG 71761799 Query 46425 ATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCG 46484 | |||||||| | || || ||||| |||||||| ||||||| ||||||||||| | | Sbjct 71761800 AGAGAGTGCGGCCATCTTCCAGCTGTTTGCCGGCAAATATCAGACGCTGCTGGTCAGGTG 71761859 Query 46485 GCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCA 46544 | | | ||||||||| || || |||| || | | ||||| || | || | Sbjct 71761860 GGATACCCTCCTTGTCTTGAATTTTGGCTTTGACATTCTCAATGGTGTCACTGGGCTCGA 71761919 Query 46545 CATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT-TTTGC 46598 | || | ||||||||||||||||| || || || |||||||| ||||| ||||| Sbjct 71761920 CCTCGAGGGTGATGGTTTTGCCCGTGAGGGTCTTCACAAAGATCTGCATGTTTGC 71761974 >seq375 Length=80997621 Score = 122 bits (134), Expect = 1e-22 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 || ||||| | |||| ||||| |||| || |||||| ||||| |||||||| || Sbjct 16482456 CCACCTCTCAGGCGCAGGACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCAGAA 16482515 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 |||||||| | || || ||||||||||| || || || | | ||||||||||| || Sbjct 16482516 AGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCGGGAGGG 16482575 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 46546 | || || || ||| |||||| ||| | | | | ||||| || | ||||| Sbjct 16482576 ATGCCTTCTTTATCCTGGATCTTGGCCTTCACATTTTCGATGGTGTCACTGGGCTCCACT 16482635 Query 46547 TCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 |||| |||||||| ||||| ||||| || || || ||||| ||||| Sbjct 16482636 TCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 16482682 Score = 118 bits (130), Expect = 1e-21 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 46366 GCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGA 46425 ||| || || | |||| ||||| |||| || |||||| ||||| |||||||| || Sbjct 16482227 GCCACCCCTCAGGCGCAGGACCAGGTGCAGGGTTGACTCCTTCTGGATGTTGTAGTCAGA 16482286 Query 46426 TAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGG 46485 |||||||| | || || ||||||||||| || || || | | ||||||||||| || Sbjct 16482287 AAGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCGGGGGG 16482346 Query 46486 CACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCAC 46545 | || || || || |||||| ||| | | | | ||||| || | ||||| Sbjct 16482347 GATGCCTTCTTTATCTTGGATCTTGGCCTTCACATTTTCGATGGTGTCACTGGGCTCCAC 16482406 Query 46546 ATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 |||| |||||||| ||||| ||||| ||||| || ||||| ||||| Sbjct 16482407 CTCCAGGGTGATGGTCTTGCCGGTCAGGGTTTTCACGAAGATCTGCAT 16482454 Score = 114 bits (126), Expect = 1e-20 Identities = 164/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 || ||||| | |||| ||||| |||| || ||| || ||||| |||||||| || Sbjct 16482684 CCACCTCTCAGGCGCAGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAGTCAGAA 16482743 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 |||||||| | || || ||||||||||| || || || | | ||||||||||| || Sbjct 16482744 AGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCGGGGGGA 16482803 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 46546 | || ||||| || ||| || ||| | | | | ||||| || | ||||| Sbjct 16482804 ATGCCTTCCTTATCTTGGATTTTGGCCTTCACATTTTCGATGGTGTCACTGGGCTCCACC 16482863 Query 46547 TCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATTTTG 46597 || | |||||||| ||||| ||||| || || || ||||| ||||||||| Sbjct 16482864 TCAAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCATTTTG 16482914 >seq293 Length=137757926 Score = 118 bits (130), Expect = 1e-21 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 || ||||| | || | ||| || |||| || ||| || ||||| |||||||| || Sbjct 129296496 CCACCTCTGAGGCGGAGCACGAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGAC 129296555 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 || |||||| | || || |||||||| ||||| || |||| | ||||||||||| || Sbjct 129296556 AGGGTGCGCCCATCTTCCAGCTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCGGGAGGA 129296615 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 46546 | || ||||| || |||||| ||||| || | | ||||| || | || || Sbjct 129296616 ATGCCTTCCTTATCTTGGATCTTTGCCTTGACATTCTCAATGGTGTCACTGGGCTCAACC 129296675 Query 46547 TCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATT 46594 || | |||||||| ||||| ||||| || || || ||||| |||||| Sbjct 129296676 TCAAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCATT 129296723 >seq163 Length=189454096 Score = 111 bits (122), Expect = 2e-19 Identities = 160/223 (72%), Gaps = 6/223 (3%) Strand=Plus/Minus Query 46379 CGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAG--TGCGCT 46436 ||||||||||| |||| || ||| |||||| |||||||| || |||| |||| Sbjct 87956263 CGCAACACCAGGTGCAGGGTGGACTC---TTGGATGTTGTAGTCTGAGAGAGAGTGCGGC 87956207 Query 46437 CGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCT 46496 | || || ||||| |||| ||| ||||||| ||||||||||| | || | | ||||| Sbjct 87956206 CATCTTCCAGCTGTTTGCTGGCAAATATCAGACGCTGCTGGTCAGGTGGGATACCCTCCT 87956147 Query 46497 TGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGA 46556 |||| || || |||| || | | ||||| || | || || || | |||| Sbjct 87956146 TGTCTTGAATTTTGGCTTTGACGTTCTCAATGGTGTCACTGGGCTCGACCTCAAGGGTGA 87956087 Query 46557 TGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT-TTTGC 46598 |||||||||||| || || || |||||||| ||||| ||||| Sbjct 87956086 TGGTTTTGCCCGGGAGGGTCTTCACAAAGATCTGCATGTTTGC 87956044 >seq51 Length=192294377 Score = 100 bits (110), Expect = 3e-16 Identities = 153/216 (71%), Gaps = 4/216 (2%) Strand=Plus/Minus Query 46380 GCAACACCAGATGCA--ATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTC 46437 ||| | |||| |||| ||| ||||| || ||||| ||| |||| || |||||||| | Sbjct 95087557 GCAGCCCCAGGTGCAGGATGGACTCT--TTCTGGATGTTGCAGTCTGAGAGAGTGCGGCC 95087500 Query 46438 GTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTT 46497 || || ||||| ||||| || ||||||| ||||||||||| || | || |||||| Sbjct 95087499 ATCCTCCAGCTGTTTGCCCGCAAATATCAGACGCTGCTGGTCAAGTGGGATGCCCTCCTT 95087440 Query 46498 GTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGAT 46557 | | || || ||||| || | ||||| || | || || || | ||||| Sbjct 95087439 GGCTTGAATTTTGGCCTTGACATTCTCAGTGGTGTCACTGGGCTCGACCTCGAGGGTGAT 95087380 Query 46558 GGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 ||| ||||| || || || || |||||||| ||||| Sbjct 95087379 GGTCTTGCCTGTGAGGGTCTTCACAAAGATCTGCAT 95087344 >seq228 Length=146850525 Score = 87.8 bits (96), Expect = 2e-12 Identities = 152/220 (69%), Gaps = 6/220 (3%) Strand=Plus/Plus Query 46381 CAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTC 46440 |||||| ||||| | ||| ||||||||| ||||||||||| || | ||| || | || Sbjct 76171956 CAACACAAGATGAAGAGTAGACTCCTTTTGAATATTGTAGTCAGACAAAGTACGTCCTTC 76172015 Query 46441 GTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTC 46500 || || |||||||| || || |||| | ||| | | | || | | ||||| || Sbjct 76172016 TTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCAGAGCAGGAGGAATTCCTTCCTTCTC 76172075 Query 46501 CATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGA---TTCCACATCCACCGTGAT 46557 | |||||| ||| | | | | ||| | |||| ||| || || | ||||| Sbjct 76172076 CTGGATCTTGGCCTTTACATTTTCTATCGTAT---TCGAGGGTTCAACCTCGAGGGTGAT 76172132 Query 46558 GGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATTTTG 46597 ||| || ||||| || ||||| ||||| || ||||||||| Sbjct 76172133 GGTCTTCCCCGTAAGGGTTTTCACAAAAATCTGCATTTTG 76172172 >seq202 Length=171882078 Score = 87.8 bits (96), Expect = 2e-12 Identities = 149/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 46381 CAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTC 46440 |||||| ||||| | ||| ||||||||| ||||||||||| || | ||| || | || Sbjct 129945884 CAACACAAGATGAAGAGTAGACTCCTTTTGAATATTGTAGTCAGACAAAGTACGTCCATC 129945825 Query 46441 GTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTC 46500 || || |||||||| || || |||| | ||||| || | || | | ||||| || Sbjct 129945824 TTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGGAATTCCTTCCTTATC 129945765 Query 46501 CATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGT 46560 | |||||| ||| | | | | | | || | ||| || || | |||||||| Sbjct 129945764 CTGGATCTTGGCCTTTACATTTTCTATCATATCCGAGGGTTCAACCTCGAGGGTGATGGT 129945705 Query 46561 TTTGCCCGTCAGCGTTTTAACAAAGATTTGCATTTT 46596 || ||||| || ||||| || || || |||||||| Sbjct 129945704 CTTCCCCGTAAGGGTTTTCACGAAAATCTGCATTTT 129945669 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565184695286520