Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Macaca_20fascicularis_20[refseq_20GCF_5F000364345.1_202013-06-12] 7,601 sequences; 2,946,843,737 total letters Query= NC_017940.1 Length=127732 Score E Sequences producing significant alignments: (Bits) Value seq428 125 6e-24 seq1 114 1e-20 seq323 113 4e-20 seq30 107 2e-18 seq163 95.1 1e-14 seq102 84.2 2e-11 seq186 82.4 6e-11 >seq428 Length=75711847 Score = 125 bits (138), Expect = 6e-24 Identities = 126/164 (77%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 29869 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGT 29928 || || |||| ||| || |||||||||||||| || | ||||||||||||||| || || Sbjct 61914292 AGGCCCGTGATGTGCGCAATCATGTACGTGAGCAGGGCGTAGCTGGCGATGTTGAAAGGC 61914233 Query 29929 ACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTC 29988 || || || |||||||| ||||| |||||||| ||||| || || ||||| | || | Sbjct 61914232 ACACCTAGGCCCATGTCTCCCGATCTCTGGTACAGCTGGCAGGACAGCTCACTGTTCACC 61914173 Query 29989 ACGTAAAACTGACACATGGTGTGGCACGGAGGAAGAGCCATGAG 30032 || || ||||| || | | ||||| ||||| || ||||| || Sbjct 61914172 ACATAGAACTGGCAGAGAGCATGGCATGGAGGCAGTGCCATCAG 61914129 Score = 114 bits (126), Expect = 1e-20 Identities = 126/168 (75%), Gaps = 0/168 (0%) Strand=Plus/Minus Query 30150 CATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTC 30209 ||| || |||| ||||| || ||||||||||||||||| || || || || |||| ||| Sbjct 61909498 CATATCTCTGTATTCTGCCCCAAAATGCCTCCACTGGAAGCCATAAACTGGACCCAAGTC 61909439 Query 30210 TCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTC 30269 || ||||| ||| ||| ||| ||||||||||||||| ||| || ||||| || Sbjct 61909438 CCCTTCTTCTCTGGCGGAGAACCCCAGGCTGTCCAAAAAGTCTCGGGATCCATTGGCATC 61909379 Query 30270 CCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGAccc 30317 |||||| || || ||||| || |||||||| | ||||| || || Sbjct 61909378 CCAGATTTTCACTCCCTTGGAAGACAGCTCTTTAGCATTTGTAGATCC 61909331 >seq1 Length=227556264 Score = 114 bits (126), Expect = 1e-20 Identities = 189/267 (71%), Gaps = 12/267 (4%) Strand=Plus/Plus Query 112080 ATGAGCTCCAGACGGGGGATCTTTAAGCTCCCTGCTGAGGACTACGTTTATCCTGTCTCT 112139 ||||||||| || || || || || || |||||||| |||| || || || | | Sbjct 82658578 ATGAGCTCCTTGTGGAGGTTCCTTGAGTTCTCTGCTGAGTACTAAATTAATTCTACCCTT 82658637 Query 112140 CAGAGGTCTATTCTTTTCGGGGATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTT 112199 | ||||| |||||| || || ||||||||||||||||| ||||||| ||||||| || Sbjct 82658638 TAAAGGTCGATTCTTCTCAGGAATGGAGAACCAAGTCTTCTTACCCATAATCACCAGATT 82658697 Query 112200 CTGCTTGCCTCTGACTGAAGACGTAGCGGTCAAGGCTC-GAAAGTGTTTAAAATCTTTGC 112258 ||| || ||| |||||||| || | |||| | ||| | || | | | || || || | Sbjct 82658698 CTGTTTACCTTCTACTGAAGAGGTTGTGGTC-ATTCTCTGGAAATATCTGAATTCATTCC 82658756 Query 112259 AAAGTCTCGCAGGATGCCACGGCAGATCTCCGTTGTTCCCGATGCCCATG-TCTGGACAC 112317 || || || | ||||| || || || || |||||||||||| ||||| || Sbjct 82658757 TGAG------CGGCGGCGAAGGCAGGTCCCCATTCTTGCCGATGCCCATGTTCTGG-GAC 82658809 Query 112318 ACGGCCACGATACCGTTCAG--AATGA 112342 || || ||||| | ||| || ||||| Sbjct 82658810 ACAGCGACGATGCAGTTTAGCAAATGA 82658836 >seq323 Length=111193037 Score = 113 bits (124), Expect = 4e-20 Identities = 185/260 (71%), Gaps = 10/260 (4%) Strand=Plus/Plus Query 112080 ATGAGCTCCAGACGGGGGATCTTTAAGCTCCCTGCTGAGGACTACGTTTATCCTGTCTCT 112139 ||||||||| || || || || || || |||||||| |||| || || || | | Sbjct 42476599 ATGAGCTCCTTGTGGAGGTTCCTTGAGTTCTCTGCTGAGAACTAAATTAATTCTACCCTT 42476658 Query 112140 CAGAGGTCTATTCTTTTCGGGGATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTT 112199 | ||||| |||||| || || ||||||||||||||||| ||||||| ||||||| || Sbjct 42476659 TAAAGGTCAATTCTTCTCAGGAATGGAGAACCAAGTCTTCTTACCCATAATCACCAGATT 42476718 Query 112200 CTGCTTGCCTCTGACTGAAGACGTAGCGGTCAAGGCTC-GAAAGTGTTTAAAATCTTTGC 112258 ||| || ||| |||||||| | | |||| | ||| | || | | | || || || | Sbjct 42476719 CTGTTTACCTTCTACTGAAGAGTTTGTGGTC-ATTCTCTGGAAATATCTGAATTCATTCC 42476777 Query 112259 AAAGTCTCGCAGGATGCCACGGCAGATCTCCGTTGTTCCCGATGCCCATG-TCTGGACAC 112317 | ||| | |||| ||||| || | ||| || |||||||||||| ||||| || Sbjct 42476778 TGA-----GCA-GCGGCCAGGGCAGGTCCCGGTTCTTGCCGATGCCCATGTTCTGG-GAC 42476830 Query 112318 ACGGCCACGATACCGTTCAG 112337 || || ||||| | ||| || Sbjct 42476831 ACAGCGACGATGCAGTTTAG 42476850 >seq30 Length=192460366 Score = 107 bits (118), Expect = 2e-18 Identities = 182/261 (70%), Gaps = 11/261 (4%) Strand=Plus/Minus Query 112080 ATGAGCTCCAGACGGGGGATCTTTAAGCTCCCTGCTGAGGACTACGTTTATCCTGTCTCT 112139 ||||||||| || || || || || || |||||||| |||| || || || || | Sbjct 177879996 ATGAGCTCCTTGAGGAGGTTCCTTGAGTTCTCTGCTGAGAACTAAATTAATTCTATCCTT 177879937 Query 112140 CAGAGGTCTATTCTTTTCGGGGATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTT 112199 | ||||| |||||| || || ||||||||||| ||||| |||||||| ||||||| || Sbjct 177879936 TAAAGGTCGATTCTTCTCAGGAATGGAGAACCAGGTCTTCCTACCCATAATCACCAGATT 177879877 Query 112200 CTGCTTGCCTCTGACTGAAGACGTAGCGGTCAAGGCTC---GAAAGTGTTTAAAATCTTT 112256 ||| || ||| |||||||| | | ||| || || | || | | || || || Sbjct 177879876 CTGTTTACCTTCTACTGAAGAAGGTGTGGT---GGTTCTCTGGAAATACCTGAATTCATT 177879820 Query 112257 GCAAAGTCTCGCAGGATGCCACGGCAGATCTCCGTTGTTCCCGATGCCCATGTCTGGACA 112316 | | || | | |||| ||||| || || || || ||||||||||||| | | | Sbjct 177879819 CCTGATTC---AACG--GCCAGGGCAGTTCCCCATTCTTGCCGATGCCCATGTTTTGGGA 177879765 Query 112317 CACGGCCACGATACCGTTCAG 112337 ||| || ||||| | ||| || Sbjct 177879764 CACAGCGACGATGCAGTTTAG 177879744 >seq163 Length=189454096 Score = 95.1 bits (104), Expect = 1e-14 Identities = 112/152 (74%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 112080 ATGAGCTCCAGACGGGGGATCTTTAAGCTCCCTGCTGAGGACTACGTTTATCCTGTCTCT 112139 ||||||||| || || || || || || |||||||| ||| || || || | | Sbjct 15633798 ATGAGCTCCTTGTGGAGGTTCCTTGAGTTCTCTGCTGAGATCTAAATTAATTCTACCCTT 15633857 Query 112140 CAGAGGTCTATTCTTTTCGGGGATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTT 112199 | |||| |||||| || || ||||||||||||||||| ||||||| ||||||| || Sbjct 15633858 TAAAGGTTGATTCTTCTCAGGAATGGAGAACCAAGTCTTCTTACCCATAATCACCAGATT 15633917 Query 112200 CTGCTTGCCTCTGACTGAAGACGTAGCGGTCA 112231 ||| || ||| |||||||| || | ||||| Sbjct 15633918 CTGTTTACCTTCTACTGAAGAGGTTGTGGTCA 15633949 >seq102 Length=65370 Score = 84.2 bits (92), Expect = 2e-11 Identities = 104/141 (74%), Gaps = 1/141 (1%) Strand=Plus/Minus Query 112080 ATGAGCTCCAGACGGGGGATCTTTAAGCTCCCTGCTGAGGACTACGTTTATCCTGTCTCT 112139 ||||||||| || || || || || || |||||||| |||| || || || || | Sbjct 23378 ATGAGCTCCTTGTGGAGGTTCCTTGAGTTCTCTGCTGAGAACTAAATTAATTCTATCCAT 23319 Query 112140 CAGAGGTCTATTCTTTTCGGGGATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTT 112199 | ||||| |||||| || || ||||||||||| |||| |||| || || ||||| || Sbjct 23318 TAAAGGTCGATTCTTCTCAGGAATGGAGAACCAGATCTTCCTACACA-TAACACCAGATT 23260 Query 112200 CTGCTTGCCTCTGACTGAAGA 112220 ||| || ||| |||||||| Sbjct 23259 CTGTTTACCTTCTACTGAAGA 23239 >seq186 Length=181584905 Score = 82.4 bits (90), Expect = 6e-11 Identities = 83/108 (77%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 112102 TTAAGCTCCCTGCTGAGGACTACGTTTATCCTGTCTCTCAGAGGTCTATTCTTTTCGGGG 112161 || || || |||||||| |||| || || || | | | ||||| |||||| || || Sbjct 78922246 TTGAGTTCTCTGCTGAGAACTAAATTAATTCTACCCTTTAAAGGTCGATTCTTCTCAGGA 78922305 Query 112162 ATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTTCTGCTTGCCT 112209 ||||||||||||||||| ||||||| ||||||| ||||| || ||| Sbjct 78922306 ATGGAGAACCAAGTCTTCTTACCCATAATCACCAGATTCTGTTTACCT 78922353 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 408579746814773