Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Macaca_20fascicularis_20[refseq_20GCF_5F000364345.1_202013-06-12] 7,601 sequences; 2,946,843,737 total letters Query= NC_017979.1 Length=43376 Score E Sequences producing significant alignments: (Bits) Value seq313 102 2e-17 seq246 80.6 7e-11 >seq313 Length=132586672 Score = 102 bits (112), Expect = 2e-17 Identities = 184/266 (69%), Gaps = 15/266 (6%) Strand=Plus/Plus Query 965 TGGATGTTATGGTAGAATAGCTCCTAGGTCCGGATTAGCGGCTAAGTTTATGATTGATGT 1024 ||| |||||||| ||| ||||||| ||||| || || || || || | |||||||| Sbjct 63792483 TGGGTGTTATGGAAGAGTAGCTCCAAGGTCAGGCTTGGCTGCAAAACACTTTATTGATGT 63792542 Query 1025 GGGTGCTGGTGTTATTGATCCAGACTTTAGGGGGAACGTTGGTGTTGTTTTATTTAATTT 1084 || |||||||| || ||| ||| | ||| || || ||||||||||| | |||||||| Sbjct 63792543 AGGAGCTGGTGTCATAGATGAAGATTATAGAGGAAATGTTGGTGTTGTACTGTTTAATTT 63792602 Query 1085 TAGC---GATAAGCGTTTTCATATTTCAAGAGGTGATAGGATTGCTCAGTTAATTTGTGA 1141 | || || ||| ||| | | || |||||| | ||||| ||| | ||||| || Sbjct 63792603 TGGCAAAGAAAAG---TTTGAAGTCAAAAAGGGTGATCGAATTGCACAGCTCATTTGCGA 63792659 Query 1142 AAAGGCTGTTTTTCCATCCATTCAAAT---AGTGGATTCCTTAGAGGATTCGGAAAGGGG 1198 | | | |||| ||||| |||| ||| | | || || || | |||||||| Sbjct 63792660 A----CGGATTTTTTATCCA--GAAATAGAAGTTCAAGCTTTGGATGACACCGAAAGGGG 63792713 Query 1199 TTCTGCAGGATTTGGGTCTACCGGAA 1224 ||| | || ||||| || || |||| Sbjct 63792714 TTCAGGTGGGTTTGGTTCCACTGGAA 63792739 >seq246 Length=133195287 Score = 80.6 bits (88), Expect = 7e-11 Identities = 180/265 (68%), Gaps = 9/265 (3%) Strand=Plus/Minus Query 965 TGGATGTTATGGTAGAATAGCTCCTAGGTCCGGATTAGCG-GCTAAGTTTATGATTGATG 1023 ||| |||||||| ||| ||||||| ||| || || || || || | ||||||| Sbjct 91140811 TGGGTGTTATGGAAGAGTAGCTCCACAGTCAGGCTTGGCTTGCAAAACACTTTATTGATG 91140752 Query 1024 TGGGTGCTGGTGTTATTGATCCAGACTTTAGGGGGAACGTTGGTGTTGTTTTATTTAATT 1083 | || |||||||| || ||| ||| | ||| || || ||||||| ||| | ||||| | Sbjct 91140751 TAGGAGCTGGTGTCATAGATGAAGATTATAGAGGAAATGTTGGTGGTGTACTGTTTAACT 91140692 Query 1084 TTAGC---GATAAGCGTTTTCATATTTCAAGAG-GTGATAGGATTGCTCAGTTAATTTGT 1139 || || || ||| ||| | | | || || ||||| | ||||| ||| | ||||| Sbjct 91140691 TTGGCAAAGAAAAG---TTTGA-AGTCAAAAAGTGTGATCGAATTGCACAGCTCATTTGC 91140636 Query 1140 GAAAAGGCTGTTTTTCCATCCATTCAAATAGTGGATTCCTTAGAGGATTCGGAAAGGGGT 1199 ||| | | ||| |||| || || ||| | | || || || | ||||||||| Sbjct 91140635 GAACGGATTTTTTATCCAGAAATAGAAGAAGTTCAAGCTTTGGATGACACCGAAAGGGGT 91140576 Query 1200 TCTGCAGGATTTGGGTCTACCGGAA 1224 || | || ||||| || || |||| Sbjct 91140575 TCAGGCGGTTTTGGTTCCACTGGAA 91140551 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 138669082338756