Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Macaca_20fascicularis_20[refseq_20GCF_5F000364345.1_202013-06-12] 7,601 sequences; 2,946,843,737 total letters Query= NC_021246.1 Length=281182 Score E Sequences producing significant alignments: (Bits) Value seq202 113 8e-20 seq355 104 4e-17 seq375 91.5 3e-13 seq274 91.5 3e-13 seq481 89.7 9e-13 seq293 84.2 4e-11 >seq202 Length=171882078 Score = 113 bits (124), Expect = 8e-20 Identities = 152/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 193152 ACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAATCGTCT 193211 || ||||| | |||| ||| || |||||| ||||| || || || | ||| || Sbjct 129945880 ACAAGATGAAGAGTAGACTCCTTTTGAATATTGTAGTCAGACAAAGTACGTCCATCTTCC 129945821 Query 193212 AATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGT 193271 | ||| || || ||||| || | ||| || ||||||||||| |||||||| ||||| || Sbjct 129945820 AGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGGAATTCCTTCCTTATCCTGG 129945761 Query 193272 ATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTA 193331 || |||| |||| |||| || |||| || | ||||| || || || || || || Sbjct 129945760 ATCTTGGCCTTTACATTTTCTATCATATCCGAGGGTTCAACCTCGAGGGTGATGGTCTTC 129945701 Query 193332 CCTGTTAGCGTTTTTACAAATATTTGCATTTT 193363 || || || ||||| || || || |||||||| Sbjct 129945700 CCCGTAAGGGTTTTCACGAAAATCTGCATTTT 129945669 >seq355 Length=112612857 Score = 104 bits (114), Expect = 4e-17 Identities = 150/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 193152 ACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAATCGTCT 193211 || ||||| | |||| ||| || |||||| ||||| || || || | ||| || Sbjct 67551082 ACGAGATGAAGAGTAGACTCCTTTTGAATATTGTAGTCAGACAAAGTACGTCCATCTTCC 67551141 Query 193212 AATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGT 193271 | ||| || || ||||| || | ||| || ||||||||||| |||||||| ||||| || Sbjct 67551142 AGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGGAATTCCTTCCTTATCCTGG 67551201 Query 193272 ATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTA 193331 || | || |||| |||| | || ||||| || | ||| | || || || || || || Sbjct 67551202 ATCTCGGCCTTTACATTTTATATCGTATCTGAGGGTTCAGCCTCGAGGGTGATGGTCTTC 67551261 Query 193332 CCTGTTAGCGTTTTTACAAATATTTGCATTTT 193363 || | || ||||| | || || |||||||| Sbjct 67551262 CCCATAAGGGTTTTCATGAAAATCTGCATTTT 67551293 >seq375 Length=80997621 Score = 91.5 bits (100), Expect = 3e-13 Identities = 160/233 (69%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 ||||||||||||| || || ||||| |||| || | |||||| || || ||||| Sbjct 16482681 ATACCACCTCTCAGGCGCAGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAGTCA 16482740 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 || | || | ||| || | || || || ||||| || | ||||| || || || Sbjct 16482741 GAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCGGGG 16482800 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || || ||||| |||||||| ||||||| || | |||| || || || | ||| Sbjct 16482801 GGAATGCCTTCCTTATCTTGGATTTTGGCCTTCACATTTTCGATGGTGTCACTGGGCTCC 16482860 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATTTT 193363 || || || || || || || || || || || || || || || |||||||| Sbjct 16482861 ACCTCAAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCATTTT 16482913 Score = 86.0 bits (94), Expect = 1e-11 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 ||||||||||||| || || ||||| |||| || | ||| || || || ||||| Sbjct 16482453 ATACCACCTCTCAGGCGCAGGACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCA 16482512 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 || | || | ||| || | || || || ||||| || | ||||| || || ||| Sbjct 16482513 GAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCGGGA 16482572 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || || ||||||||||| || || |||| || | |||| || || || | ||| Sbjct 16482573 GGGATGCCTTCTTTATCCTGGATCTTGGCCTTCACATTTTCGATGGTGTCACTGGGCTCC 16482632 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 ||||| || || || || || || || || || || || || || ||||| Sbjct 16482633 ACTTCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 16482682 >seq274 Length=96509753 Score = 91.5 bits (100), Expect = 3e-13 Identities = 115/158 (73%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 193205 ATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTT 193264 ||| || ||||| || || ||||| || | ||| || ||||||||||| |||||||| || Sbjct 68626071 ATCTTCCAATTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGGAATTCCTTCCTT 68626012 Query 193265 ATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTAT 193324 ||| || || |||| |||| |||| | || | | | ||||| || || || || Sbjct 68626011 ATCCTGGATATTGGCCTTTACATTTTCTGTTGTGTTCAAGGGTTCAACCTCAAGGGTGAT 68625952 Query 193325 AGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATTT 193362 || || ||||| || ||||| || || || ||||||| Sbjct 68625951 GGTCTTCCCTGTAAGGGTTTTCACGAAAATCTGCATTT 68625914 >seq481 Length=152835861 Score = 89.7 bits (98), Expect = 9e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 193155 AGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAATCGTCTAAT 193214 ||||| | |||| ||| || ||| || |||| || || || | || || | | Sbjct 1378324 AGATGAAGAGTAGGCTCCTTTTGAATGTTGCAGTCAGACAAAGTACGTCCGTCTTCCAGT 1378265 Query 193215 TGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATT 193274 || | || ||||| || | ||| || ||||||||||| |||||||| ||||| || || Sbjct 1378264 TGCTCGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGGAATTCCTTCCTTATCCTGGATC 1378205 Query 193275 TTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCT 193334 |||| |||| |||| ||||| || | |||| || || || ||||| || || Sbjct 1378204 TTGGCCTTTACATTTTCTGCCGTATCTGAGGGTTCAATCTCAAGGGTGATAGTCTTCCCC 1378145 Query 193335 GTTAGCGTTTTTACAAATATTTGCATTTT 193363 |||| ||||| || || || |||||||| Sbjct 1378144 CTTAGGGTTTTCACGAAAATCTGCATTTT 1378116 >seq293 Length=137757926 Score = 84.2 bits (92), Expect = 4e-11 Identities = 157/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 || |||||||| | || || || || |||| || | |||||| || || ||||| Sbjct 129296493 ATCCCACCTCTGAGGCGGAGCACGAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCA 129296552 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 || | || | ||| || | || ||||||||||| || | ||||| || || ||| Sbjct 129296553 GACAGGGTGCGCCCATCTTCCAGCTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCGGGA 129296612 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || || ||||| |||||||| || || | || | ||| ||| || || | |||| Sbjct 129296613 GGAATGCCTTCCTTATCTTGGATCTTTGCCTTGACATTCTCAATGGTGTCACTGGGCTCA 129296672 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATT 193361 || || || || || || || || || || || || || || || |||||| Sbjct 129296673 ACCTCAAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCATT 129296723 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 899568921586320