Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Macaca_20fascicularis_20[refseq_20GCF_5F000364345.1_202013-06-12] 7,601 sequences; 2,946,843,737 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq355 132 9e-26 seq202 132 9e-26 seq228 118 2e-21 seq481 98.7 2e-15 seq375 96.9 7e-15 seq274 96.9 7e-15 seq398 87.8 4e-12 seq313 84.2 4e-11 >seq355 Length=112612857 Score = 132 bits (146), Expect = 9e-26 Identities = 170/232 (73%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 192309 ACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTC-TTTAGAGATATTATAATCAG 192367 |||||| | ||| | || || | ||| | ||||| ||| ||| || ||||| || |||| Sbjct 67551063 ACCACCACGAAGTCTCAACACGAGATGAAGAGTAGACTCCTTTTGA-ATATTGTAGTCAG 67551121 Query 192368 ATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTG 192427 | || || ||| |||| |||| ||| || ||||||||||| | ||| || |||||||| | Sbjct 67551122 ACAAAGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAG 67551181 Query 192428 GTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTA 192487 | |||||||| ||||| || || | |||||||| ||| | |||||| | ||| Sbjct 67551182 GAATTCCTTCCTTATCCTGGATCTCGGCCTTTACATTTTATATCGTATCTGAGGGTTCAG 67551241 Query 192488 CTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTT 192539 | || || || ||||| || || | | ||||| || || ||||||||||| Sbjct 67551242 CCTCGAGGGTGATGGTCTTCCCCATAAGGGTTTTCATGAAAATCTGCATTTT 67551293 >seq202 Length=171882078 Score = 132 bits (146), Expect = 9e-26 Identities = 170/232 (73%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 192309 ACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTC-TTTAGAGATATTATAATCAG 192367 |||||| | ||| | || || | ||| | ||||| ||| ||| || ||||| || |||| Sbjct 129945899 ACCACCACGAAGTCTCAACACAAGATGAAGAGTAGACTCCTTTTGA-ATATTGTAGTCAG 129945841 Query 192368 ATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTG 192427 | || || ||| |||| |||| ||| || ||||||||||| | ||| || |||||||| | Sbjct 129945840 ACAAAGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAG 129945781 Query 192428 GTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTA 192487 | |||||||| ||||| || || || |||||||| ||| ||| || | ||| | Sbjct 129945780 GAATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATCATATCCGAGGGTTCAA 129945721 Query 192488 CTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTT 192539 | || || || ||||| || || || | ||||| | || ||||||||||| Sbjct 129945720 CCTCGAGGGTGATGGTCTTCCCCGTAAGGGTTTTCACGAAAATCTGCATTTT 129945669 >seq228 Length=146850525 Score = 118 bits (130), Expect = 2e-21 Identities = 167/232 (72%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 192309 ACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTC-TTTAGAGATATTATAATCAG 192367 |||||| | ||| | || || | ||| | ||||| ||| ||| || ||||| || |||| Sbjct 76171941 ACCACCACGAAGTCTCAACACAAGATGAAGAGTAGACTCCTTTTGA-ATATTGTAGTCAG 76171999 Query 192368 ATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTG 192427 | || || ||| | || |||| ||| || ||||||||||| | ||| || || |||| | Sbjct 76172000 ACAAAGTACGTCCTTCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCAGAGCAGGAG 76172059 Query 192428 GTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTA 192487 | |||||||| || || || || || |||||||| ||| | || || | ||| | Sbjct 76172060 GAATTCCTTCCTTCTCCTGGATCTTGGCCTTTACATTTTCTATCGTATTCGAGGGTTCAA 76172119 Query 192488 CTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTT 192539 | || || || ||||| || || || | ||||| | ||| ||||||||||| Sbjct 76172120 CCTCGAGGGTGATGGTCTTCCCCGTAAGGGTTTTCACAAAAATCTGCATTTT 76172171 >seq481 Length=152835861 Score = 98.7 bits (108), Expect = 2e-15 Identities = 148/208 (71%), Gaps = 2/208 (1%) Strand=Plus/Minus Query 192333 ATGTAAAGTAGCCTC-TTTAGAGATATTATAATCAGATAATGTTCGTTCATCATCCAATT 192391 ||| | ||||| ||| ||| || || || | ||||| || || ||| | || |||| || Sbjct 1378322 ATGAAGAGTAGGCTCCTTTTGA-ATGTTGCAGTCAGACAAAGTACGTCCGTCTTCCAGTT 1378264 Query 192392 GTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTT 192451 | | ||||||||||| | ||| || |||||||| || |||||||| ||||| || || | Sbjct 1378263 GCTCGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGGAATTCCTTCCTTATCCTGGATCT 1378204 Query 192452 TATTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAG 192511 | |||||||| | | |||||| | ||| | || || || || || || || Sbjct 1378203 TGGCCTTTACATTTTCTGCCGTATCTGAGGGTTCAATCTCAAGGGTGATAGTCTTCCCCC 1378144 Query 192512 TTAATGTTTTAATAAATATCTGCATTTT 192539 ||| ||||| | || ||||||||||| Sbjct 1378143 TTAGGGTTTTCACGAAAATCTGCATTTT 1378116 >seq375 Length=80997621 Score = 96.9 bits (106), Expect = 7e-15 Identities = 159/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 192311 CACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGATA 192370 |||| | ||| | ||||| ||||| | ||||| |||||| ||||| || ||| | Sbjct 10429453 CACCACGAAGTCTCAATACAAAATGAAGAGTAGACTCTTTTTGAATATTGTAGTCAAA-- 10429396 Query 192371 ATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTA 192430 || ||| |||| |||| ||| || ||||||||||| |||||| || |||| || | Sbjct 10429395 --GTACGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCGGTCTCTGCCGACCAGGAGGAA 10429338 Query 192431 TTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACTT 192490 ||||||| ||| | || || || | |||||| ||| | || || | ||| | | Sbjct 10429337 TTCCTTCCTTAACCTGGATCTTGGCCTATACATTTTCTATTGTGTCCGAGGGTTCACCCT 10429278 Query 192491 CTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTT 192539 | || || ||||| || || || | ||| | | || ||||||||||| Sbjct 10429277 CGAGGGTGATGGTCTTCCCTGTAAGGGTTATCACGAAAATCTGCATTTT 10429229 >seq274 Length=96509753 Score = 96.9 bits (106), Expect = 7e-15 Identities = 151/210 (72%), Gaps = 6/210 (3%) Strand=Plus/Plus Query 192333 ATGTAAAGTAGCCTC-TTTAGAGATATTATAATCAGATAATGTTCGTTCATCATCCAATT 192391 ||| | ||||| ||| ||| || || | || ||||| || || | | |||| |||| || Sbjct 44758673 ATGAAGAGTAGACTCCTTTTGA-ATGTG-TAGTCAGACAAAGTACATCCATCCTCCAGTT 44758730 Query 192392 G--TTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTAT 192449 | ||| | ||||||||| | ||| || |||||| || |||||||| ||||| || || Sbjct 44758731 GCTTTTGCTAGCAAAGATCAGTCTTTGCCCATCAGGAGGAATTCCTTCCTTATCCTGGAT 44758790 Query 192450 TTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACC 192509 || |||||||| || | | |||||| | ||| || || || || ||||| || || Sbjct 44758791 CTTGGCCTTTACATTT-TTGTCGTATCTGAGGGTTCAACCTCGAGGGTGATGGTCTTCCC 44758849 Query 192510 AGTTAATGTTTTAATAAATATCTGCATTTT 192539 || | ||||| | || ||||||||||| Sbjct 44758850 TGTAAGGGTTTTCGTGAAAATCTGCATTTT 44758879 Score = 91.5 bits (100), Expect = 3e-13 Identities = 159/231 (69%), Gaps = 13/231 (6%) Strand=Plus/Minus Query 192309 ACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTC-TTTAGAGATATTATAATCAG 192367 |||||| | ||| | || || | ||| | ||||| ||| ||| || || || || |||| Sbjct 68626132 ACCACCACGAAGTCTCAACACAAGATGAAGAGTAGACTCCTTTTGA-ATGTTGTAGTCAG 68626074 Query 192368 ATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTG 192427 | |||| |||||||| || ||||||||||| | ||| || |||||||| | Sbjct 68626073 A-----------CATCTTCCAATTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAG 68626025 Query 192428 GTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTA 192487 | |||||||| ||||| || || || |||||||| | | | | | | ||| | Sbjct 68626024 GAATTCCTTCCTTATCCTGGATATTGGCCTTTACATTTTCTGTTGTGTTCAAGGGTTCAA 68625965 Query 192488 CTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTT 192538 | || || || ||||| || || || | ||||| | || |||||||||| Sbjct 68625964 CCTCAAGGGTGATGGTCTTCCCTGTAAGGGTTTTCACGAAAATCTGCATTT 68625914 >seq398 Length=96864807 Score = 87.8 bits (96), Expect = 4e-12 Identities = 138/195 (71%), Gaps = 2/195 (1%) Strand=Plus/Minus Query 192309 ACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTC-TTTAGAGATATTATAATCAG 192367 |||||| | ||| | || || | ||| | ||||| ||| ||| || ||||| || |||| Sbjct 66392984 ACCACCACGAAGTCTCAACACAAGATGAAGAGTAGACTCCTTTTGA-ATATTGTAGTCAG 66392926 Query 192368 ATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTG 192427 | || || | | |||| |||| ||| || ||||||||||| || || ||| |||| | Sbjct 66392925 ACAAAGTCCATGCATCTTCCAGTTGCTTGCCAGCAAAGATCCCCCTTTGCTGAGCAGGAG 66392866 Query 192428 GTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTA 192487 | |||||||| ||||| || || | |||||||| ||| | ||| || | ||| | Sbjct 66392865 GAATTCCTTCCTTATCCTGGATCTCGGCCTTTACATTTTCTATCGTATCCGAGGGTTCAA 66392806 Query 192488 CTTCTAGAGTAATGG 192502 | | || || |||| Sbjct 66392805 CATGGAGGGTGATGG 66392791 >seq313 Length=132586672 Score = 84.2 bits (92), Expect = 4e-11 Identities = 112/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 192385 TCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCT 192444 |||| ||| || ||||||||||| | ||| || | | |||| | ||||||| ||||| Sbjct 114065491 TCCAGTTGCTTGCCAGCAAAGATAAGTCTTTGCTAACCAGGAAGATTTCCTTCCTTATCC 114065432 Query 192445 TGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTT 192504 || || || |||||||| ||| | ||||| | ||| || || ||||| |||| Sbjct 114065431 TGGATCTTGGCCTTTACATTTTCTATTGTGTCTGAAGGTTCAACCTCCAGAGTGGTGGTC 114065372 Query 192505 TTACCAGTTAATGTTTTAATAAATATCTGCATTTTA 192540 || | || | | ||| ||||| |||||||||||| Sbjct 114065371 TTCTCTGTAAGAGATTTTATAAAAATCTGCATTTTA 114065336 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 984384123646350