Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Macaca_20fascicularis_20[refseq_20GCF_5F000364345.1_202013-06-12] 7,601 sequences; 2,946,843,737 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq355 131 3e-25 seq202 131 3e-25 seq228 113 8e-20 seq481 104 4e-17 seq375 104 4e-17 seq274 89.7 9e-13 seq186 87.8 3e-12 >seq355 Length=112612857 Score = 131 bits (144), Expect = 3e-25 Identities = 173/240 (72%), Gaps = 0/240 (0%) Strand=Plus/Plus Query 171833 TTTCATAATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATT 171892 |||| || |||||| | ||||| || || | ||| | ||||| ||| || |||||| Sbjct 67551054 TTTCTTAGCACCACCACGAAGTCTCAACACGAGATGAAGAGTAGACTCCTTTTGAATATT 67551113 Query 171893 ATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTG 171952 || || || |||| ||| | || |||| ||| || |||||||| || | ||| || || Sbjct 67551114 GTAGTCAGACAAAGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTG 67551173 Query 171953 GTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGA 172012 ||||| || |||||||| ||||| || || | |||||||| ||| |||||||| Sbjct 67551174 ATCAGGAGGAATTCCTTCCTTATCCTGGATCTCGGCCTTTACATTTTATATCGTATCTGA 67551233 Query 172013 CGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATTTT 172072 | ||| | || || || ||||| || || | | ||||| ||||| ||||||||||| Sbjct 67551234 GGGTTCAGCCTCGAGGGTGATGGTCTTCCCCATAAGGGTTTTCATGAAAATCTGCATTTT 67551293 >seq202 Length=171882078 Score = 131 bits (144), Expect = 3e-25 Identities = 173/240 (72%), Gaps = 0/240 (0%) Strand=Plus/Minus Query 171833 TTTCATAATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATT 171892 |||| || |||||| | ||||| || || | ||| | ||||| ||| || |||||| Sbjct 129945908 TTTCTTAGCACCACCACGAAGTCTCAACACAAGATGAAGAGTAGACTCCTTTTGAATATT 129945849 Query 171893 ATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTG 171952 || || || |||| ||| | || |||| ||| || |||||||| || | ||| || || Sbjct 129945848 GTAGTCAGACAAAGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTG 129945789 Query 171953 GTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGA 172012 ||||| || |||||||| ||||| || || || |||||||| ||| |||| || Sbjct 129945788 ATCAGGAGGAATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATCATATCCGA 129945729 Query 172013 CGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATTTT 172072 | ||| || || || || ||||| || || || | ||||| | ||| ||||||||||| Sbjct 129945728 GGGTTCAACCTCGAGGGTGATGGTCTTCCCCGTAAGGGTTTTCACGAAAATCTGCATTTT 129945669 >seq228 Length=146850525 Score = 113 bits (124), Expect = 8e-20 Identities = 169/240 (70%), Gaps = 0/240 (0%) Strand=Plus/Plus Query 171833 TTTCATAATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATT 171892 |||| || |||||| | ||||| || || | ||| | ||||| ||| || |||||| Sbjct 76171932 TTTCTTAGCACCACCACGAAGTCTCAACACAAGATGAAGAGTAGACTCCTTTTGAATATT 76171991 Query 171893 ATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTG 171952 || || || |||| ||| | || |||| ||| || |||||||| || | ||| || | Sbjct 76171992 GTAGTCAGACAAAGTACGTCCTTCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCAG 76172051 Query 171953 GTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGA 172012 |||| || |||||||| || || || || || |||||||| ||| |||| || Sbjct 76172052 AGCAGGAGGAATTCCTTCCTTCTCCTGGATCTTGGCCTTTACATTTTCTATCGTATTCGA 76172111 Query 172013 CGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATTTT 172072 | ||| || || || || ||||| || || || | ||||| | || ||||||||||| Sbjct 76172112 GGGTTCAACCTCGAGGGTGATGGTCTTCCCCGTAAGGGTTTTCACAAAAATCTGCATTTT 76172171 >seq481 Length=152835861 Score = 104 bits (114), Expect = 4e-17 Identities = 167/240 (70%), Gaps = 0/240 (0%) Strand=Plus/Minus Query 171833 TTTCATAATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATT 171892 |||| || | |||| | ||||| || | | ||| | ||||| ||| || ||| || Sbjct 1378355 TTTCTTAGCAACACCACAAAGTCTCAACAAAAGATGAAGAGTAGGCTCCTTTTGAATGTT 1378296 Query 171893 ATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTG 171952 | || || |||| ||| |||| |||| ||| | |||||||| || | ||| || || Sbjct 1378295 GCAGTCAGACAAAGTACGTCCGTCTTCCAGTTGCTCGCCAGCAAAGATCAGTCTTTGCTG 1378236 Query 171953 GTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGA 172012 ||||| || |||||||| ||||| || || || |||||||| | |||||||| Sbjct 1378235 ATCAGGAGGAATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTGCCGTATCTGA 1378176 Query 172013 CGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATTTT 172072 | ||| | || || || || || || || ||| ||||| | ||| ||||||||||| Sbjct 1378175 GGGTTCAATCTCAAGGGTGATAGTCTTCCCCCTTAGGGTTTTCACGAAAATCTGCATTTT 1378116 >seq375 Length=80997621 Score = 104 bits (114), Expect = 4e-17 Identities = 167/240 (70%), Gaps = 4/240 (2%) Strand=Plus/Minus Query 171833 TTTCATAATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATT 171892 |||| || | |||| | ||||| ||||| ||||| | ||||| |||||| |||||| Sbjct 10429464 TTTCTTAGCAGCACCACGAAGTCTCAATACAAAATGAAGAGTAGACTCTTTTTGAATATT 10429405 Query 171893 ATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTG 171952 || || |||| ||| | || |||| ||| || |||||||| || |||||| | Sbjct 10429404 GTAGTC----AAAGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCGGTCTCTGCCG 10429349 Query 171953 GTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGA 172012 |||| || |||||||| ||| | || || || | |||||| ||| || || || Sbjct 10429348 ACCAGGAGGAATTCCTTCCTTAACCTGGATCTTGGCCTATACATTTTCTATTGTGTCCGA 10429289 Query 172013 CGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATTTT 172072 | ||| | || || || ||||| || || || | ||| | | ||| ||||||||||| Sbjct 10429288 GGGTTCACCCTCGAGGGTGATGGTCTTCCCTGTAAGGGTTATCACGAAAATCTGCATTTT 10429229 >seq274 Length=96509753 Score = 89.7 bits (98), Expect = 9e-13 Identities = 167/242 (69%), Gaps = 4/242 (2%) Strand=Plus/Plus Query 171833 TTTCATAATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATT 171892 |||| || |||||| |||| || | | ||| | ||||| ||| || ||| | Sbjct 44758640 TTTCTTAGCACCACCATGAAGTGTCAACGCAAGATGAAGAGTAGACTCCTTTTGAATGTG 44758699 Query 171893 ATAATCTGATAAAGATCGTTCGTCATCCAATTG--TTTACCAGCAAAAATTAATCTCTGT 171950 || || || |||| | | | || |||| ||| ||| | |||||| || | ||| || Sbjct 44758700 -TAGTCAGACAAAGTACATCCATCCTCCAGTTGCTTTTGCTAGCAAAGATCAGTCTTTGC 44758758 Query 171951 TGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCT 172010 ||||| || |||||||| ||||| || || || |||||||| || | |||||| Sbjct 44758759 CCATCAGGAGGAATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTT-TTGTCGTATCT 44758817 Query 172011 GACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATT 172070 || | ||| || || || || ||||| || || || | ||||| |||| ||||||||| Sbjct 44758818 GAGGGTTCAACCTCGAGGGTGATGGTCTTCCCTGTAAGGGTTTTCGTGAAAATCTGCATT 44758877 Query 172071 TT 172072 || Sbjct 44758878 TT 44758879 >seq186 Length=181584905 Score = 87.8 bits (96), Expect = 3e-12 Identities = 161/234 (69%), Gaps = 8/234 (3%) Strand=Plus/Plus Query 171842 ACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCTGA 171901 |||||| | ||||| || || | | |||| | ||| || ||| ||||| || || Sbjct 137354704 ACCACCACGAAGTCTCAACACAAGAC---AAGTGGACTCCTTTTGAATGTTATAGTCAGA 137354760 Query 171902 TAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCT---CTGTTGGTCAGG 171958 |||| | | |||| |||| ||| || |||||||| || | ||| || |||||||| Sbjct 137354761 CAAAGCACATCCGTCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTCACTACTGGTCAGG 137354820 Query 171959 TGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTC 172018 | |||||||| ||||| || || || ||||||||| | | |||| | | ||| Sbjct 137354821 AGAAATTCCTTCCTTATCCTGGATCTTGGCTTTTACATT--TCCTTGTATTCAAGGGTTC 137354878 Query 172019 TACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATTTT 172072 || || |||| |||| ||| | | || | | | ||||| ||||||||||| Sbjct 137354879 AACCTCAAGAGCGATGGCTTTCTCCATAAAGGGTGTTATGAAAATCTGCATTTT 137354932 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 905050000765800