Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Macaca_20fascicularis_20[refseq_20GCF_5F000364345.1_202013-06-12] 7,601 sequences; 2,946,843,737 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq481 84.2 6e-11 >seq481 Length=152835861 Score = 84.2 bits (92), Expect = 6e-11 Identities = 356/553 (64%), Gaps = 12/553 (2%) Strand=Plus/Minus Query 133076 TTTGTTATGTTCCCAATTAAGGACGACGAGATTTGGCAGATGTATAAAAAACAGCAAGAT 133135 ||||| || ||||| || || || | || || |||||||||||||| || | ||| | Sbjct 42597635 TTTGTCATCTTCCCCATCGAGTACCATGATATCTGGCAGATGTATAAGAAGGCGGAAGCT 42597576 Query 133136 TTATTTTGGACTTCAACTGAAGTAGATTTATCCAAAGACCCAGCCCACTGGGAAGCCCTT 133195 | || ||||| | || || || ||||| ||| ||||||||| ||| Sbjct 42597575 TCCTTCTGGACCGCCGAGGAGGTGGACCCGTCCAAGGACATTTGGCACTGGGAATTCCTG 42597516 Query 133196 ACTGGGGATGAAAAACATTTTAT-TTCTATGATTTTAGCGTTTTTTGCTGCGAGTGATGG 133254 | || || | | ||||||| | | ||| || | | || ||||| || |||||||| Sbjct 42597515 AAGCCCGAGGAGAGATATTTTATATCCCATG-TTCTGGTTTTCTTTGC-GCAAGTGATGG 42597458 Query 133255 TATTGTTCTTGAAAATTTAGGAACACGGTTTATGGGAGAAGTTCAACTGGCCGAAGCCCG 133314 || || || ||| || | || | || ||||||||| || | |||||||| Sbjct 42597457 CATAGTAAATGCAAACTTGGTGGAGCGATGTAGCCAAGAAGTTCAGGTGACAGAAGCCCG 42597398 Query 133315 TGCCTTTTATGGGCTACAGATTGCGATGGAAAATATCCATTCTATCACATATTCTACTCT 133374 || | ||| | || ||||| |||||||| || |||||| | ||| | || Sbjct 42597397 CTGTTTCTGTGGCTTCCAAATTGCCATGGAAAACATACATTCTGGAATGTATAGTTTCCT 42597338 Query 133375 AATTGATACTTACATCAAAGATACCGTCCAGAAGCACAAACTATTCAACGCCATT--AGC 133432 ||||| |||||||| |||||| || | | | | | ||||| |||||| | | Sbjct 42597337 TATTGACACTTACATAAAAGATCCCAAAGAAAGGGAATTTCGCTTCAATGCCATTGAAAC 42597278 Query 133433 GAATTTCCTTGTATTAAAAAGAAATCTGACTGGGCTATTAAATGGATCCAGGACAAGCGT 133492 || | |||||| | || ||||| | || ||||| | | ||||| |||||| Sbjct 42597277 GA--TGCCTTGTGTCAAGAAGAAGGCAGATTGGGCCTTGCACTGGATTGGGGACAAAGCA 42597220 Query 133493 GCGAGTTTTGCTACTCGTCTCGTTGCTTTTGCTGTAGTAGAGGGCAtttttttCAGTGGT 133552 || | | || ||| | || | ||||||| || || ||||| |||| |||| Sbjct 42597219 GCTACCTATGGGGAACGTGTTGTAGTCTTTGCTGCAGCGGAAGGCATCTTTT---CTGGT 42597163 Query 133553 GCGTTCTGC-TCTATTTTTTGGCTTAAAAAGCGTGGTATTCTACCTGGACTGTGTTTTTC 133611 || ||| || || || ||||| || || || || | | ||||| || ||||| Sbjct 42597162 -TATTTTGCATCGATATTCTGGCTCAAGAAACGAGGACTGATGCCTGGCCTCACCTTTTC 42597104 Query 133612 TAACGAACTTATT 133624 || ||||||||| Sbjct 42597103 CAATGAACTTATT 42597091 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471674262903537