Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Macaca_20fascicularis_20[refseq_20GCF_5F000364345.1_202013-06-12] 7,601 sequences; 2,946,843,737 total letters Query= NC_023177.1 Length=124688 Score E Sequences producing significant alignments: (Bits) Value seq375 84.2 2e-11 >seq375 Length=80997621 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| || || || ||||| | || ||||| ||||| ||| | || |||| | | Sbjct 16482454 ATGCAGATCTTCGTGAAAACCCTGACCGGCAAGACCATCACCCTGGAGGTGGAGCCCAGT 16482395 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 || || ||| | || || ||||| |||||||||||| | ||| || ||| Sbjct 16482394 GACACCATCGAAAATGTGAAGGCCAAGATCCAAGATAAAGAAGGCATCCCCCCCGACCAG 16482335 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||||| || || | ||| || || |||||||| || | | || | | ||||||||| Sbjct 16482334 CAGAGGCTCATCTTTGCAGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGACTACAAC 16482275 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGT 107764 || || |||||||| || ||||| |||| Sbjct 16482274 ATCCAGAAGGAGTCAACCCTGCACCTGGT 16482246 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 398839849175089