Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Macaca_20fascicularis_20[refseq_20GCF_5F000364345.1_202013-06-12] 7,601 sequences; 2,946,843,737 total letters Query= NC_024303.1 Length=144898 Score E Sequences producing significant alignments: (Bits) Value seq323 150 2e-31 >seq323 Length=111193037 Score = 150 bits (166), Expect = 2e-31 Identities = 724/1132 (64%), Gaps = 53/1132 (5%) Strand=Plus/Minus Query 20205 ATGCCTTTTGTGTGATAGATCTTGGAGAAATTGTGCAGAGACATTTTAGATGGCTCAAGG 20264 ||||||| | |||| ||| || ||||| ||| | ||| |||| | || ||| | || | Sbjct 46771934 ATGCCTTCTATGTGGCAGACCTGGGAGACATTCTAAAGAAACATCTGAGGTGGTTAAACG 46771875 Query 20265 CTTTGCCTAAAGTCATTCCATTTTACGCCGTTAAGGCCCA-GAACGACGAGAGAGTCCTC 20323 || | ||| |||| || ||||| || || || | || | || | || | Sbjct 46771874 CTCTCCCTCGTGTCACCCCCTTTTATGCAGTCAAATGTAATGATAGCAAAGCCA-TCATG 46771816 Query 20324 AAGACCCTAGCTGCCCTTAAAACTGGCTTTGACTGTGCCAGTAAGCAGGAGATTCAGTTA 20383 |||||||| ||||| | || || ||||||||||| || ||| || || ||||| Sbjct 46771815 AAGACCCTTGCTGCTGTGGGGACAGGATTTGACTGTGCTAGCAAGACTGAAATACAGTTG 46771756 Query 20384 CTGCAAAATCTGGGAGTTCACGCAGACAGGATACTTTTTGCGAATCCTTGTAAGCAGCCT 20443 |||| | |||| | || | |||| ||||| | | ||| ||||||||||| || Sbjct 46771755 GTGCAGAGTCTGAGGGTGCCTCCAGAGAGGATTATCTATGCAAATCCTTGTAAACAAGTA 46771696 Query 20444 TCGCATATAACGTATGCCGCTCAAACTGGAGTAAGGCTGATGACTTTTGATAGTGAAGAA 20503 || || | | |||||| ||| | | |||||| | ||||||||||||||||||||| Sbjct 46771695 TCTCAAACTAAGTATGCTGCTAATAATGGAGTCCAGATGATGACTTTTGATAGTGAAGTT 46771636 Query 20504 GAGCTTACCAAAATTGATCGCCTGCACCATGATGCTAAGCTGGTACTGAGGATTAAAGTG 20563 ||| | | ||| ||| | || | | || ||| |||| || ||||| Sbjct 46771635 GAGTTGATGAAAGTTGCCAGAGCACATCCAAAAGCAAAGTTGGTTTTGCGGATTGCCACT 46771576 Query 20564 GATGACTCTAACTCAGACAGCATACTGAGTGTCAAGTTTGGGGCTCCTATTGAAGCCAGC 20623 ||||| || || ||| | | || ||||| || || || || | | | ||| Sbjct 46771575 GATGATTCCAAAGCAGTCTGTCGTCTCAGTGTTAAATTCGGTGCCACGCTCAGAAATAGC 46771516 Query 20624 CAACGCCTGCTAAAACAGGCCAAAAAATTAGGCCTAGAAGTGATCGGAGTCAGCTTCCAC 20683 | ||| | || ||| ||| | | | || || | || |||||||||||| Sbjct 46771515 AGGCTCCTTTTGGAAAGGGCAAAAGAGGTGAATATCGATGTTGTTGGTGTCAGCTTCCAC 46771456 Query 20684 GTGGGCAGTGGCTGCAAAGATGCACAGGCTTACAGAAAAGCCATAGCTGAGGCCAGGAGA 20743 || || |||||||| | ||| | || | | | | || || |||| || | | Sbjct 46771455 GTAGGAAGTGGCTGTACCGATCCTGAGACCTTCGTGCAGGCAATCTCTGATACCCGCTGT 46771396 Query 20744 GCTTTTGACTTTGGCACGCTGA--TGGGCTTTGACATGTACCTCTTGGATATTGGTGGCG 20801 | ||||||| | || ||||| | || || |||||| || | |||||||| || | Sbjct 46771395 GTTTTTGACATGGG--GGCTGAGGTTGGTTTCAGCATGTATCTGCTTGATATTGGCGGTG 46771338 Query 20802 GCTTTCCCGGGATCAATGAGATTG---AGCCAACTTTTGAGGACAT-TGCAGAAGTCATT 20857 ||||| || ||||| |||| || ||| | ||||| || || ||| | | || Sbjct 46771337 GCTTT-CCTGGATC--TGAGGATGTGAAGCTTAAATTTGAAGAGATCACCAGCA-TAATC 46771282 Query 20858 AACGCGGCCTTGGAAAGGCATTTTCCAGATGATGCCAACCTGACAATTATTGGTGAACCT 20917 ||| | || ||||| || |||||| || | | ||| ||| || | | | ||| Sbjct 46771281 AACCCAGCGTTGGACAGATATTTTCTGTCAGACTCTAGAGTGAGAATCATAGCTAAGCCT 46771222 Query 20918 GGCAGGTACTACGCTACCTCGGCGCTAACTATAGCTGTAACTGTGATTGCTA--AAAAGT 20975 ||||| ||||| | | | || || | || | || || | | | || | | |||| | Sbjct 46771221 GGCAGATACTATGTTGCATCAGCTTTCACACTTGCGGTTAATATCATCTCCAAGAAAATT 46771162 Query 20976 GTGTTGAAG--ACA------CTC-----CTGGAGA---------TAAAAAG---TTTATG 21010 || || ||| ||| ||| || ||| | || || |||||| Sbjct 46771161 GTATTAAAGGAACAGACTGGCTCTGATGATGAAGATGAGTCGAGTGAACAGACCTTTATG 46771102 Query 21011 TATTATGTTAATGATGGCGTCTATGGCAGTTTTAACTGCATATTATTTAACCATGCTCGT 21070 | |||||| ||| |||| |||||||| ||||| |||||| | | | | || || | | Sbjct 46771101 TGTTATGTGAATTATGGTGTCTATGGATCATTTAATTGCATACTGTATGATCACGCACAT 46771042 Query 21071 CCTATGCCTATGCTGCTTAAAGAAAAACGCCTTGA--AGACA--AAG-ACTATGTTTCTA 21125 | ||| | |||| ||||| | ||| | ||| | ||| | ||| || | Sbjct 46771041 GTAAAGCCCCTTCTGC-AAAAGAGA----CCTAAACCAGATAAGAAGTATTATTCATCCA 46770987 Query 21126 GCATTTGGGGGCCTAGCTGCGATGGCTTAGATTGCATTGTTAAGCGGTGTGAACTGCCAG 21185 |||| ||||| || | || |||||| | ||| | |||||| |||| ||||| ||||| | Sbjct 46770986 GCATATGGGGACCAATATGTGATGGCCTTGATCGGATTGTTGAGCGCTGTGACCTGCCCG 46770927 Query 21186 AGCTTCAAGTGGGCGACTGGCTCATATTTGAAAACATGGGCGCTTACAGCTTGGTCAGCT 21245 | | || ||||| || ||| | | |||||||||||||||||||||| || | ||| Sbjct 46770926 AAATGCATGTGGGTGATTGGATGCTCTTTGAAAACATGGGCGCTTACA-CTGTTGCTGCT 46770868 Query 21246 -CTTCAACCTTTAACGGCTTCCCAAAGCCAGAAAAGCACTATGTTATTTCAG 21296 | || || || || ||||||| | ||| | | ||||||| || |||| Sbjct 46770867 GCCTCTACGTTCAATGGCTTCCAGAGGCCGGTGATCTACTATGTGATGTCAG 46770816 Score = 89.7 bits (98), Expect = 5e-13 Identities = 129/177 (73%), Gaps = 4/177 (2%) Strand=Plus/Plus Query 21122 TCTAGCATTTGGGGGCCTAGCTGCGATGGCTTAGATTGCATTGTTAAGCGGTGTGAACTG 21181 || ||||| ||||| || | || |||||| | ||| | |||||| |||| ||||| ||| Sbjct 100534779 TCCAGCATATGGGGACCAACATGTGATGGCCTCGATCGGATTGTTGAGCGCTGTGACCTG 100534838 Query 21182 CCAGAGCTTCAAGTGGGCGACTGGCTCATATTTGAAAACATGGGCGCTTACAGCTTGGTC 21241 || || | || ||||| || ||| | | |||||||||||||| ||||||| || | Sbjct 100534839 CCCGAAATGCATGTGGGTGATTGGATGCTCTTTGAAAACATGGGTGCTTACA-CTGTTGC 100534897 Query 21242 AGCT-CTTCAACCTTTAACGGCTTCCCAAAGCCAGAAAAGC-ACTATGTTATTTCAG 21296 ||| | || || || || ||||| ||| || | || | | ||||||| || |||| Sbjct 100534898 TGCTGCCTCTACGTTCAATGGCTT-CCAGAGGCCGACGATCTACTATGTGATGTCAG 100534953 Score = 86.0 bits (94), Expect = 6e-12 Identities = 97/130 (75%), Gaps = 0/130 (0%) Strand=Plus/Plus Query 20372 GAGATTCAGTTACTGCAAAATCTGGGAGTTCACGCAGACAGGATACTTTTTGCGAATCCT 20431 || || ||||| |||| |||||||| || | |||| ||||| | | ||| |||||| Sbjct 100532215 GAAATACAGTTGGTGCAGAATCTGGGGGTGCCTCCAGAGAGGATTATCTATGCAAATCCT 100532274 Query 20432 TGTAAGCAGCCTTCGCATATAACGTATGCCGCTCAAACTGGAGTAAGGCTGATGACTTTT 20491 ||||| || || || || | |||||| ||| | | |||||| | ||||||||||| Sbjct 100532275 TGTAAACAAGTATCTCAAATTAAGTATGCTGCTAATAATGGAGTCCAGATGATGACTTTT 100532334 Query 20492 GATAGTGAAG 20501 |||||||||| Sbjct 100532335 GATAGTGAAG 100532344 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 463501557373680