Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Macaca_20fascicularis_20[refseq_20GCF_5F000364345.1_202013-06-12] 7,601 sequences; 2,946,843,737 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq202 120 7e-22 seq228 118 3e-21 seq355 105 2e-17 seq398 104 6e-17 seq274 102 2e-16 seq375 100 7e-16 seq293 98.7 2e-15 seq481 95.1 3e-14 seq428 84.2 5e-11 >seq202 Length=171882078 Score = 120 bits (132), Expect = 7e-22 Identities = 150/206 (73%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| || || || || || ||||| | || || ||| || || | | ||| Sbjct 129945687 AAAACCCTTACGGGGAAGACCATCACCCTCGAGGTTGAACCCTCGGATATGATAGAAAAT 129945746 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 |||||| ||||| || || || ||||||||| || || |||||||| ||||| Sbjct 129945747 GTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGATCAGCAAAGACTGATCTTT 129945806 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 || || ||||| ||||||||||| | |||||| | || ||||| | || || |||||| Sbjct 129945807 GCTGGCAAGCAACTGGAAGATGGACGTACTTTGTCTGACTACAATATTCAAAAGGAGTCT 129945866 Query 206365 ACTCTTCACCTTGTTTTGAGACTTCG 206390 |||||||| ||||| ||||||||||| Sbjct 129945867 ACTCTTCATCTTGTGTTGAGACTTCG 129945892 Score = 109 bits (120), Expect = 1e-18 Identities = 87/105 (83%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 204752 CGAAGTCTCAAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTC 204811 ||||||||||| ||||| |||||||||||||| || || | ||| ||||||| |||||| Sbjct 129945892 CGAAGTCTCAACACAAGATGAAGAGTAGACTCCTTTTGAATATTGTAGTCAGACAAAGTA 129945833 Query 204812 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATAAGCCGTTGTTGA 204856 | |||||||||||| ||||| || || ||||| || | ||| ||| Sbjct 129945832 CGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGA 129945788 >seq228 Length=146850525 Score = 118 bits (130), Expect = 3e-21 Identities = 165/228 (72%), Gaps = 5/228 (2%) Strand=Plus/Minus Query 206164 AAAATGTACCAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAA 206223 |||||| ||||| ||| ||||| || || || || || ||||| | || || ||| Sbjct 76172171 AAAATG---CAGATTTTTGTGAAAACCCTTACGGGGAAGACCATCACCCTCGAGGTTGAA 76172115 Query 206224 AGTTCTGACACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCG 206283 || | || | ||| |||||| ||||| || || || ||||||||| || Sbjct 76172114 CCCTCGAATACGATAGAAAATGTAAAGGCCAAGATCCAGGAGAAGGAAGGAATTCCTCCT 76172055 Query 206284 GACGCT-CAAAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGA 206342 | | || |||||||| ||||| || || ||||| ||||||| ||| | |||||| | || Sbjct 76172054 G-CTCTGCAAAGACTGATCTTTGCTGGCAAGCAACTGGAAGAAGGACGTACTTTGTCTGA 76171996 Query 206343 TTACAACGTCCAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCG 206390 ||||| | || || |||||||||||||| ||||| ||||||||||| Sbjct 76171995 CTACAATATTCAAAAGGAGTCTACTCTTCATCTTGTGTTGAGACTTCG 76171948 Score = 102 bits (112), Expect = 2e-16 Identities = 83/101 (82%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 204752 CGAAGTCTCAAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTC 204811 ||||||||||| ||||| |||||||||||||| || || | ||| ||||||| |||||| Sbjct 76171948 CGAAGTCTCAACACAAGATGAAGAGTAGACTCCTTTTGAATATTGTAGTCAGACAAAGTA 76172007 Query 204812 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATAAGCCGTTG 204852 | ||| |||||||| ||||| || || ||||| || | ||| Sbjct 76172008 CGTCCTTCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTG 76172048 >seq355 Length=112612857 Score = 105 bits (116), Expect = 2e-17 Identities = 105/136 (77%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 206255 AGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAGC 206314 |||| || || || ||||||||| || || |||||||| ||||| || || |||| Sbjct 67551205 AGATCCAGGATAAGGAAGGAATTCCTCCTGATCAGCAAAGACTGATCTTTGCTGGCAAGC 67551146 Query 206315 AGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCACC 206374 | ||||||||||| | |||||| | || ||||| | || || |||||||||||||| | Sbjct 67551145 AACTGGAAGATGGACGTACTTTGTCTGACTACAATATTCAAAAGGAGTCTACTCTTCATC 67551086 Query 206375 TTGTTTTGAGACTTCG 206390 | || ||||||||||| Sbjct 67551085 TCGTGTTGAGACTTCG 67551070 Score = 104 bits (114), Expect = 6e-17 Identities = 86/105 (82%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 204752 CGAAGTCTCAAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTC 204811 ||||||||||| || || |||||||||||||| || || | ||| ||||||| |||||| Sbjct 67551070 CGAAGTCTCAACACGAGATGAAGAGTAGACTCCTTTTGAATATTGTAGTCAGACAAAGTA 67551129 Query 204812 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATAAGCCGTTGTTGA 204856 | |||||||||||| ||||| || || ||||| || | ||| ||| Sbjct 67551130 CGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGA 67551174 >seq398 Length=96864807 Score = 104 bits (114), Expect = 6e-17 Identities = 86/105 (82%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 204752 CGAAGTCTCAAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTC 204811 ||||||||||| ||||| |||||||||||||| || || | ||| ||||||| ||||||| Sbjct 66392977 CGAAGTCTCAACACAAGATGAAGAGTAGACTCCTTTTGAATATTGTAGTCAGACAAAGTC 66392918 Query 204812 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATAAGCCGTTGTTGA 204856 | | |||||||||| ||||| || || ||||| || ||| ||| Sbjct 66392917 CATGCATCTTCCAGTTGCTTGCCAGCAAAGATCCCCCTTTGCTGA 66392873 Score = 93.3 bits (102), Expect = 1e-13 Identities = 102/136 (75%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 206255 AGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAGC 206314 |||| || || || ||||||||| || | ||||| ||||| || || |||| Sbjct 66392842 AGATCCAGGATAAGGAAGGAATTCCTCCTGCTCAGCAAAGGGGGATCTTTGCTGGCAAGC 66392901 Query 206315 AGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCACC 206374 | ||||||||| | |||||||| | || ||||| | || || |||||||||||||| | Sbjct 66392902 AACTGGAAGATGCATGGACTTTGTCTGACTACAATATTCAAAAGGAGTCTACTCTTCATC 66392961 Query 206375 TTGTTTTGAGACTTCG 206390 |||| ||||||||||| Sbjct 66392962 TTGTGTTGAGACTTCG 66392977 >seq274 Length=96509753 Score = 102 bits (112), Expect = 2e-16 Identities = 149/207 (72%), Gaps = 4/207 (2%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| || ||||| || || ||||| | || || ||| || || || | | || Sbjct 44758861 AAAACCCTTACAGGGAAGACCATCACCCTCGAGGTTGAACCCTCAGATAC-GACAAAAAT 44758803 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 |||||| ||||| || || || ||||||||| || || | |||||||| ||||| Sbjct 44758802 GTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGATGGGCAAAGACTGATCTTT 44758743 Query 206305 GCCGG--AAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGT 206362 || | |||||| |||| |||||| | |||||| | || |||| | | || || |||| Sbjct 44758742 GCTAGCAAAAGCAACTGGAGGATGGATGTACTTTGTCTGACTACA-CATTCAAAAGGAGT 44758684 Query 206363 CTACTCTTCACCTTGTTTTGAGACTTC 206389 |||||||||| |||| |||| ||||| Sbjct 44758683 CTACTCTTCATCTTGCGTTGACACTTC 44758657 Score = 93.3 bits (102), Expect = 1e-13 Identities = 143/206 (69%), Gaps = 11/206 (5%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| || ||||| || || ||||| | || || ||| | ||||| ||| Sbjct 68625931 AAAACCCTTACAGGGAAGACCATCACCCTTGAGGTTGAACCCTTGAACACAACAGAAAAT 68625990 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 |||||| || || || || || ||||||||| || || |||||||| ||||| Sbjct 68625991 GTAAAGGCCAATATCCAGGATAAGGAAGGAATTCCTCCTGATCAGCAAAGACTGATCTTT 68626050 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 || || ||||| |||||||||| | || |||||| | || || |||||| Sbjct 68626051 GCTGGCAAGCAATTGGAAGATGT-----------CTGACTACAACATTCAAAAGGAGTCT 68626099 Query 206365 ACTCTTCACCTTGTTTTGAGACTTCG 206390 |||||||| ||||| ||||||||||| Sbjct 68626100 ACTCTTCATCTTGTGTTGAGACTTCG 68626125 >seq375 Length=80997621 Score = 100 bits (110), Expect = 7e-16 Identities = 147/205 (72%), Gaps = 6/205 (3%) Strand=Plus/Plus Query 206187 AACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCAGT 206246 ||| || ||||| || || ||||| | || | ||| || |||||| | ||| || Sbjct 10429249 AACCCTTACAGGGAAGACCATCACCCTCGAGGGTGAACCCTCGGACACAATAGAAAATGT 10429308 Query 206247 AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCC-GGACGCTCAAAGACTTATCTTCG 206305 | || ||||| || | || ||||||||| || || || || |||| ||||| | Sbjct 10429309 ATAGGCCAAGATCCAGGTTAAGGAAGGAATTCCTCCTGGTCGG-CAGAGACCGATCTTTG 10429367 Query 206306 CCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTA 206365 | || ||||| ||||||||||| | ||||| || ||||| | || |||||||||| Sbjct 10429368 CTGGCAAGCAACTGGAAGATGGACGTACTTT----GACTACAATATTCAAAAAGAGTCTA 10429423 Query 206366 CTCTTCACCTTGTTTTGAGACTTCG 206390 ||||||| |||| ||||||||||| Sbjct 10429424 CTCTTCATTTTGTATTGAGACTTCG 10429448 Score = 89.7 bits (98), Expect = 1e-12 Identities = 75/92 (82%), Gaps = 4/92 (4%) Strand=Plus/Minus Query 204752 CGAAGTCTCAAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTC 204811 ||||||||||| |||| ||||||||||||||||| || | ||| |||| |||||| Sbjct 10429448 CGAAGTCTCAATACAAAATGAAGAGTAGACTCTTTTTGAATATTGTAGT----CAAAGTA 10429393 Query 204812 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGAT 204843 | |||||||||||| ||||| || || ||||| Sbjct 10429392 CGTCCATCTTCCAGTTGCTTGCCAGCAAAGAT 10429361 Score = 89.7 bits (98), Expect = 1e-12 Identities = 136/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || || || || || || || ||||| | || ||||| |||||| ||||| Sbjct 16482895 AAGACCCTGACCGGCAAGACCATCACCCTTGAGGTGGAGCCCAGTGACACCATCGAAAAT 16482836 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| || || ||||| || ||||| ||| || ||| || || || ||||| Sbjct 16482835 GTGAAGGCCAAAATCCAAGATAAGGAAGGCATTCCCCCCGACCAGCAGAGGCTCATCTTT 16482776 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 || || |||||| |||||||||| | ||| | | || |||||| ||||||||||||| Sbjct 16482775 GCAGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGACTACAACATCCAGAAAGAGTCG 16482716 Query 206365 ACTCTTCACCTTGT 206378 || || ||||| || Sbjct 16482715 ACCCTGCACCTGGT 16482702 >seq293 Length=137757926 Score = 98.7 bits (108), Expect = 2e-15 Identities = 102/134 (76%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| |||||| ||||| || ||||| ||| || ||| || || || ||||| Sbjct 129296647 GTCAAGGCAAAGATCCAAGATAAGGAAGGCATTCCTCCCGACCAGCAGAGGCTGATCTTT 129296588 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 |||||||||||| |||||||||| | || || | || |||||| ||||||||||||| Sbjct 129296587 GCCGGAAAGCAGCTGGAAGATGGGCGCACCCTGTCTGACTACAACATCCAGAAAGAGTCC 129296528 Query 206365 ACTCTTCACCTTGT 206378 || || ||||| || Sbjct 129296527 ACCCTGCACCTCGT 129296514 Score = 93.3 bits (102), Expect = 1e-13 Identities = 137/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || || ||||| || || || ||||| | || ||||| |||||| |||| Sbjct 129296251 AAGACCCTCACTGGCAAGACCATCACCCTCGAGGTGGAGCCCAGTGACACCATCGAGAAT 129296192 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| |||||| || || || ||||| || || ||| || || | ||||| Sbjct 129296191 GTCAAGGCAAAGATCCAGGACAAGGAAGGCATCCCTCCTGACCAGCAGAGGTTGATCTTT 129296132 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 |||||||||||| |||||||||| | || || | || |||||| ||||||||||||| Sbjct 129296131 GCCGGAAAGCAGCTGGAAGATGGGCGCACCCTGTCTGACTACAACATCCAGAAAGAGTCC 129296072 Query 206365 ACTCTTCACCTTGT 206378 || || ||||| || Sbjct 129296071 ACCCTGCACCTGGT 129296058 Score = 91.5 bits (100), Expect = 3e-13 Identities = 100/132 (76%), Gaps = 1/132 (1%) Strand=Plus/Minus Query 206247 AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGC 206306 |||||||| ||| ||||| || ||||| || || ||| || || | ||||| || Sbjct 129296416 AAAGCAAA-GATCCAAGACAAGGAAGGCATCCCTCCTGACCAGCAGAGGTTGATCTTTGC 129296358 Query 206307 CGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTAC 206366 ||| || ||| ||||||||||| | || || | || |||||| |||||||||||||||| Sbjct 129296357 CGGGAAACAGCTGGAAGATGGACGCACCCTGTCTGACTACAACATCCAGAAAGAGTCTAC 129296298 Query 206367 TCTTCACCTTGT 206378 || ||||| || Sbjct 129296297 CCTGCACCTGGT 129296286 Score = 86.0 bits (94), Expect = 1e-11 Identities = 70/85 (82%), Gaps = 0/85 (0%) Strand=Plus/Plus Query 204764 ACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTCCTTCCATCTTCC 204823 || ||||| || || ||||||||||||| || ||||||| || || | ||||||||| Sbjct 129296514 ACGAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTCC 129296573 Query 204824 AGCTGCTTTCCGGCGAAGATAAGCC 204848 |||||||||||||| ||||| |||| Sbjct 129296574 AGCTGCTTTCCGGCAAAGATCAGCC 129296598 >seq481 Length=152835861 Score = 95.1 bits (104), Expect = 3e-14 Identities = 108/145 (74%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 |||||| |||| || || || ||||||||| || ||| |||||||| ||||| Sbjct 4592344 GTAAAGGCCAAGACCCAGGATAAGGAAGGAATTCCTCCTGACCAGCAAAGACTGATCTTT 4592403 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 || | |||| ||||||||||| | |||||| | ||||||||| || ||||||| Sbjct 4592404 GCTGTCGAGCAACTGGAAGATGGACGTACTTTGTCTGATTACAACACTCAAGAAGAGTCC 4592463 Query 206365 ACTCTTCACCTTGTTTTGAGACTTC 206389 |||||||| | ||| |||||| ||| Sbjct 4592464 ACTCTTCATCATGTGTTGAGATTTC 4592488 >seq428 Length=75711847 Score = 84.2 bits (92), Expect = 5e-11 Identities = 152/220 (69%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| || || ||||| || ||||| ||||| | || || || |||| Sbjct 71761965 CAGATCTTTGTGAAGACCCTCACGGGCAAAACCATCACCCTCGAGGTCGAGCCCAGTGAC 71761906 Query 206233 ACAGTCGAATCAGT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCA 206291 || | || || ||||| ||| |||||||| || || || || || ||| || Sbjct 71761905 ACCATTGAGAATGTCAAAGCCAAA-ATTCAAGACAAGGAGGGTATCCCACCTGACCAGCA 71761847 Query 206292 AAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGT 206351 | || || || ||||| || ||| |||||||||| | ||| | | || |||||| | Sbjct 71761846 GCGTCTGATATTTGCCGGCAAACAGCTGGAAGATGGCCGCACTCTCTCAGACTACAACAT 71761787 Query 206352 CCAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCGA 206391 |||||||||||| || || ||||| || ||| | || ||| Sbjct 71761786 CCAGAAAGAGTCCACCCTGCACCTGGTGTTGCGCCTGCGA 71761747 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181705705057521