Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Macaca_20fascicularis_20[refseq_20GCF_5F000364345.1_202013-06-12] 7,601 sequences; 2,946,843,737 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq293 102 8e-17 seq336 91.5 1e-13 seq428 89.7 5e-13 seq375 89.7 5e-13 >seq293 Length=137757926 Score = 102 bits (112), Expect = 8e-17 Identities = 139/194 (72%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 |||||||| || ||||||||||| || ||| ||| |||||| |||||||| || | | Sbjct 129295389 GACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTCCAGCTGTTTCCCAGCA 129295448 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 |||| | | ||| || || ||||| |||||||| ||||| || ||| || | Sbjct 129295449 AAGATCAACCTCTGCTGGTCAGGAGGGATGCCTTCCTTATCCTGGATCTTTGCCTTGACA 129295508 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | || | || ||| | |||||||| |||| || | || || |||||||| || || Sbjct 129295509 TTCTCAATGGTGTCGCTGGGCTCCACCTCGAGGGTGATGGTCTTGCCAGTCAGGGTCTTC 129295568 Query 132110 ATGAAAATCTGCAT 132123 | ||| |||||||| Sbjct 129295569 ACGAAGATCTGCAT 129295582 Score = 93.3 bits (102), Expect = 4e-14 Identities = 152/219 (69%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 131905 CAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACG 131964 |||||||| ||||| || | | |||||||| || ||||||||||| || ||| || Sbjct 129294908 CAAGCGCAGGACCAAGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCG 129294967 Query 131965 CGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTC 132024 |||||| |||||||| || | | |||| | | ||| || || ||||| |||||||| Sbjct 129294968 TCCATCTTCCAGCTGTTTCCCAGCAAAGATCAACCTCTGCTGGTCAGGAGGGATGCCTTC 129295027 Query 132025 TTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGT 132084 || || || ||| || | | || | || ||| | |||||||| || | || Sbjct 129295028 CTTGTCCTGGATCTTTGCCTTGACATTCTCAATGGTGTCGCTGGGCTCCACCTCAAGGGT 129295087 Query 132085 CAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 | || || ||||| || || || | ||| |||||||| Sbjct 129295088 GATGGTCTTGCCAGTGAGGGTCTTCACGAAGATCTGCAT 129295126 Score = 93.3 bits (102), Expect = 4e-14 Identities = 137/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 |||||||| || ||||||||||| || ||| ||| |||||| ||||| || || | | Sbjct 129295617 GACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTCCAGCTGCTTTCCAGCA 129295676 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 |||| | | ||| || || ||||| ||||| || || || || ||| || | Sbjct 129295677 AAGATCAACCTCTGCTGGTCAGGAGGGATGCCCTCCTTGTCCTGGATCTTTGCCTTGACA 129295736 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | ||| | ||| || | |||||||| |||| || | || || |||||||| || || Sbjct 129295737 TTTTCAATAGTGTCACTGGGCTCCACCTCGAGGGTGATGGTCTTGCCAGTCAGGGTCTTC 129295796 Query 132110 ATGAAAATCTGCAT 132123 | ||| |||||||| Sbjct 129295797 ACGAAGATCTGCAT 129295810 Score = 93.3 bits (102), Expect = 4e-14 Identities = 137/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 |||||||| || ||||||||||| || ||| || |||||| |||||||| |||| | Sbjct 129296301 GACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGTCCATCTTCCAGCTGTTTCCCGGCA 129296360 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 |||| | | ||| || || ||||| |||||||| || || || ||| ||| | Sbjct 129296361 AAGATCAACCTCTGCTGGTCAGGAGGGATGCCTTCCTTGTCTTGGATCTTTGCTTTGACG 129296420 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | || | || || | ||||| || |||| || | || || |||||||| || || Sbjct 129296421 TTCTCGATGGTGTCACTGGGCTCGACCTCGAGGGTGATGGTCTTGCCAGTCAGGGTCTTC 129296480 Query 132110 ATGAAAATCTGCAT 132123 | ||| |||||||| Sbjct 129296481 ACGAAGATCTGCAT 129296494 Score = 93.3 bits (102), Expect = 4e-14 Identities = 137/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 |||||||| || ||||||||||| || ||| ||| |||||| ||||| || |||| | Sbjct 129296529 GACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTCCAGCTGCTTTCCGGCA 129296588 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 |||| || | ||| || || ||||| |||||||| ||||| || ||| || | Sbjct 129296589 AAGATCAGCCTCTGCTGGTCGGGAGGAATGCCTTCCTTATCTTGGATCTTTGCCTTGACA 129296648 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | || | || || | ||||| || || | || | || || |||||||| || || Sbjct 129296649 TTCTCAATGGTGTCACTGGGCTCAACCTCAAGGGTGATGGTCTTGCCAGTCAGGGTCTTC 129296708 Query 132110 ATGAAAATCTGCAT 132123 | ||| |||||||| Sbjct 129296709 ACGAAGATCTGCAT 129296722 Score = 89.7 bits (98), Expect = 5e-13 Identities = 136/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 |||||||| || ||||||||||| || ||| ||| |||||| |||||||| || | | Sbjct 129295161 GACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTCCAGCTGTTTCCCAGCA 129295220 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 |||| | | ||| || || ||||| |||||||| || || || ||| || | Sbjct 129295221 AAGATCAACCTCTGCTGGTCAGGAGGGATGCCTTCCTTGTCCTGGATCTTTGCCTTGACA 129295280 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | || | || ||| | |||||||| || | || | || || ||||| || || || Sbjct 129295281 TTCTCAATGGTGTCGCTGGGCTCCACCTCAAGGGTGATGGTCTTGCCAGTGAGGGTCTTC 129295340 Query 132110 ATGAAAATCTGCAT 132123 | ||| |||||||| Sbjct 129295341 ACGAAGATCTGCAT 129295354 Score = 89.7 bits (98), Expect = 5e-13 Identities = 136/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 |||||||| || ||||||||||| || ||| ||| |||||| ||||| || |||| | Sbjct 129296073 GACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTCCAGCTGCTTTCCGGCA 129296132 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 |||| | | ||| || || ||||| |||||||| || || || ||| || | Sbjct 129296133 AAGATCAACCTCTGCTGGTCAGGAGGGATGCCTTCCTTGTCCTGGATCTTTGCCTTGACA 129296192 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | || | || || | |||||||| |||| || | || || ||||| || || || Sbjct 129296193 TTCTCGATGGTGTCACTGGGCTCCACCTCGAGGGTGATGGTCTTGCCAGTGAGGGTCTTC 129296252 Query 132110 ATGAAAATCTGCAT 132123 | ||| |||||||| Sbjct 129296253 ACGAAGATCTGCAT 129296266 Score = 84.2 bits (92), Expect = 2e-11 Identities = 135/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 |||||||| || ||||||||||| || ||| ||| |||||| ||||| || || | | Sbjct 129295845 GACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTCCAGCTGCTTTCCAGCA 129295904 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 |||| | | ||| || || ||||| ||||| || || || || ||| || | Sbjct 129295905 AAGATCAACCTCTGCTGGTCAGGAGGGATGCCCTCCTTGTCCTGGATCTTTGCCTTGACA 129295964 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | ||| | ||| || | ||||| || || | || | || || |||||||| || || Sbjct 129295965 TTTTCAATAGTGTCACTGGGCTCGACCTCAAGGGTGATGGTCTTGCCAGTCAGGGTCTTC 129296024 Query 132110 ATGAAAATCTGCAT 132123 | ||| |||||||| Sbjct 129296025 ACGAAGATCTGCAT 129296038 >seq336 Length=130733371 Score = 91.5 bits (100), Expect = 1e-13 Identities = 80/100 (80%), Gaps = 0/100 (0%) Strand=Plus/Plus Query 147503 TGTACTGCACGATTTCGGCGCACAGGTTGCTGCATTTTATGACTCCCAAATTTTGCTGAT 147562 |||||| ||| ||||| | |||||||||||||||||| ||| ||||| || ||||| | Sbjct 66514916 TGTACTCCACTATTTCTGTGCACAGGTTGCTGCATTTGATGGTTCCCAGGTTCTGCTGGT 66514975 Query 147563 TGCTTTTCCGATTGCACGCGTCTTTGAAGAGCATGTACGG 147602 |||| || ||||| || | |||||| ||||||| || || Sbjct 66514976 TGCTCTTTCGATTACAGGAATCTTTGTAGAGCATATATGG 66515015 >seq428 Length=75711847 Score = 89.7 bits (98), Expect = 5e-13 Identities = 153/222 (69%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 131903 CGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTA 131962 |||| |||||| |||| || | | | |||||||| || ||||||||||| | || Sbjct 71761748 CGCAGGCGCAACACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCTGAGAGAGTG 71761807 Query 131963 CGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCT 132022 || |||||| |||||||| |||| | | || |||||||| || || || || || || Sbjct 71761808 CGGCCATCTTCCAGCTGTTTGCCGGCAAATATCAGACGCTGCTGGTCAGGTGGGATACCC 71761867 Query 132023 TCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACC 132082 || || || |||||| ||| | | || | || || | ||||| || |||| Sbjct 71761868 TCCTTGTCTTGAATTTTGGCTTTGACATTCTCAATGGTGTCACTGGGCTCGACCTCGAGG 71761927 Query 132083 GTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCATG 132124 || | ||||| || || || || || | || ||||||||| Sbjct 71761928 GTGATGGTTTTGCCCGTGAGGGTCTTCACAAAGATCTGCATG 71761969 >seq375 Length=80997621 Score = 89.7 bits (98), Expect = 5e-13 Identities = 151/219 (69%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 131905 CAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACG 131964 || ||||| |||| || | | ||||||| || || ||||||||||| | || || Sbjct 16482236 CAGGCGCAGGACCAGGTGCAGGGTTGACTCCTTCTGGATGTTGTAGTCAGAAAGAGTGCG 16482295 Query 131965 CGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTC 132024 |||||| ||||| || || | | |||| || | ||| || || || || |||||||| Sbjct 16482296 GCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCGGGGGGGATGCCTTC 16482355 Query 132025 TTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGT 132084 |||||| || || |||| | ||| | || || | |||||||| || | || Sbjct 16482356 TTTATCTTGGATCTTGGCCTTCACATTTTCGATGGTGTCACTGGGCTCCACCTCCAGGGT 16482415 Query 132085 CAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 | || || || ||||| ||||| | ||| |||||||| Sbjct 16482416 GATGGTCTTGCCGGTCAGGGTTTTCACGAAGATCTGCAT 16482454 Score = 89.7 bits (98), Expect = 5e-13 Identities = 151/219 (69%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 131905 CAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACG 131964 || ||||| |||| || | | | ||||| || || ||||||||||| | || || Sbjct 16482464 CAGGCGCAGGACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCAGAAAGAGTGCG 16482523 Query 131965 CGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTC 132024 |||||| ||||| || || | | |||| || | ||| || || ||||| |||||||| Sbjct 16482524 GCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCGGGAGGGATGCCTTC 16482583 Query 132025 TTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGT 132084 |||||| || || |||| | ||| | || || | ||||||||||| | || Sbjct 16482584 TTTATCCTGGATCTTGGCCTTCACATTTTCGATGGTGTCACTGGGCTCCACTTCCAGGGT 16482643 Query 132085 CAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 | || || || ||||| || || | ||| |||||||| Sbjct 16482644 GATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 16482682 Score = 84.2 bits (92), Expect = 2e-11 Identities = 150/219 (68%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 131905 CAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACG 131964 || ||||| |||| || | | | |||||||| || ||||||||||| | || || Sbjct 16482692 CAGGCGCAGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCG 16482751 Query 131965 CGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTC 132024 |||||| ||||| || || | | |||| || | ||| || || || || |||||||| Sbjct 16482752 GCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCGGGGGGAATGCCTTC 16482811 Query 132025 TTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGT 132084 ||||| ||||| |||| | ||| | || || | |||||||| || | || Sbjct 16482812 CTTATCTTGGATTTTGGCCTTCACATTTTCGATGGTGTCACTGGGCTCCACCTCAAGGGT 16482871 Query 132085 CAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 | || || || ||||| || || | ||| |||||||| Sbjct 16482872 GATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 16482910 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476565915978360