Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Macaca_20fascicularis_20[refseq_20GCF_5F000364345.1_202013-06-12] 7,601 sequences; 2,946,843,737 total letters Query= NC_026421.1 Length=182380 Score E Sequences producing significant alignments: (Bits) Value seq30 275 7e-69 seq1 159 4e-34 seq428 145 9e-30 >seq30 Length=192460366 Score = 275 bits (304), Expect = 7e-69 Identities = 251/317 (79%), Gaps = 0/317 (0%) Strand=Plus/Minus Query 171069 CAGGTGGTGACCCAGGATGAGAGGGTGCTGCTGAACACGCCAGCCTCCCTGAAATGCTCC 171128 || ||||||||||||||||| || | || |||| |||| || || ||| | | |||||| Sbjct 159851944 CAAGTGGTGACCCAGGATGAAAGAGAGCAGCTGTACACTCCTGCTTCCTTAAGATGCTCT 159851885 Query 171129 CTGCAGACTTCTCAGGAGGTGCTGATTGTCACCTGGCAGAAAATCAAGCCCACCATTCCA 171188 ||||| | | | ||||| || |||||||| || |||||||||| || | | ||| Sbjct 159851884 CTGCAAAATGCCCAGGAAGTCCTGATTGTGACATGGCAGAAAAAGAAAGCTGTAAGCCCA 159851825 Query 171189 GAGAACATGATAACTTTTAGCAAAGACCACGGGGTGGTGGTCCAGCCGGCTTATAAGGAC 171248 || |||||| | || || ||| | |||| ||||||||| ||||||| || ||||||||| Sbjct 159851824 GAAAACATGGTCACCTTCAGCGAGAACCATGGGGTGGTGATCCAGCCTGCCTATAAGGAC 159851765 Query 171249 AAGATAAACATCACCCAGCTTGGACTCCAAAACTCAACCATCACTTTTTGGAATACCACC 171308 ||||||||||| |||||||| |||||||||||| |||||||||| || ||||||| |||| Sbjct 159851764 AAGATAAACATTACCCAGCTGGGACTCCAAAACACAACCATCACCTTCTGGAATATCACC 159851705 Query 171309 TTAGAGGACGAGGGGTGCTACAACTGCCTCTTTAACACCTTTGGGTCTGGGAAAATCTCG 171368 | ||||| || ||||| |||| || ||||| || |||||||| |||||||| ||||| Sbjct 159851704 CTGGAGGATGAAGGGTGTTACATGTGTCTCTTCAATACCTTTGGTTCTGGGAAGATCTCA 159851645 Query 171369 GGGGTGGCCTGCCTCAC 171385 || ||||||||||| Sbjct 159851644 GGAACAGCCTGCCTCAC 159851628 Score = 109 bits (120), Expect = 6e-19 Identities = 119/158 (75%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 8610 GTACTCTCTGGTGTTTTTGTTTGGGCTAATTGGCAATGCCCTGGTGATCCTAGTCCTCAT 8669 ||| || |||||||| || | || || | ||||| | ||||| | | ||||||| Sbjct 101275913 GTATTCCCTGGTGTTCGTGGTGGGCCTCTTGGGCAACGTGGTGGTGGTGATGATCCTCAT 101275972 Query 8670 AAAGTACAAGAGGCTCAGGATCATGACCAACATCTTCCTGTTCAACCTGGCCCTTGGTGA 8729 ||| |||| ||||||| | || ||||||||||||| |||| ||||||||||| || || Sbjct 101275973 AAAATACAGGAGGCTCCGAATTATGACCAACATCTACCTGCTCAACCTGGCCATTTCGGA 101276032 Query 8730 CCTGCTGCTGATTTTCACCCTCCCCTTTTGGATTCACT 8767 |||||| | | |||||||| || || ||||| |||| Sbjct 101276033 CCTGCTCTTCCTCTTCACCCTTCCGTTCTGGATCCACT 101276070 Score = 95.1 bits (104), Expect = 1e-14 Identities = 109/147 (74%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 8610 GTACTCTCTGGTGTTTTTGTTTGGGCTAATTGGCAATGCCCTGGTGATCCTAGTCCTCAT 8669 |||||| |||| ||| | |||| | |||| || ||||||| |||| ||||| | Sbjct 101214907 GTACTCCTTGGTATTTGTCATTGGCGTGGTTGGAAACCTCCTGGTGGTCCTGGTCCTTGT 101214848 Query 8670 AAAGTACAAGAGGCTCAGGATCATGACCAACATCTTCCTGTTCAACCTGGCCCTTGGTGA 8729 | ||||||||||||| | |||||||||||||| ||| | ||||||||| || ||| Sbjct 101214847 GCAATACAAGAGGCTCAAAAACATGACCAACATCTACCTCCTGAACCTGGCCATTTCTGA 101214788 Query 8730 CCTGCTGCTGATTTTCACCCTCCCCTT 8756 |||||| | | ||||| || ||||| Sbjct 101214787 CCTGCTCTTCCTGTTCACACTGCCCTT 101214761 Score = 86.0 bits (94), Expect = 7e-12 Identities = 113/157 (72%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 8611 TACTCTCTGGTGTTTTTGTTTGGGCTAATTGGCAATGCCCTGGTGATCCTAGTCCTCATA 8670 ||||| |||||||| | ||||| | | ||||| ||||| |||| |||| ||| Sbjct 101400530 TACTCACTGGTGTTCATCTTTGGTTTTGTGGGCAACATACTGGTCGTCCTCATCCTGATA 101400589 Query 8671 AAGTACAAGAGGCTCAGGATCATGACCAACATCTTCCTGTTCAACCTGGCCCTTGGTGAC 8730 || | ||| ||||| | | |||||| |||||| |||| ||||||||||| | |||| Sbjct 101400590 AACTGCAAAAGGCTGAAAAGCATGACTGACATCTACCTGCTCAACCTGGCCATCTCTGAC 101400649 Query 8731 CTGCTGCTGATTTTCACCCTCCCCTTTTGGATTCACT 8767 ||||| | || | || ||||||| ||| ||||| Sbjct 101400650 CTGCTTTTCCTTCTTACTGTCCCCTTCTGGGCTCACT 101400686 Score = 82.4 bits (90), Expect = 9e-11 Identities = 151/220 (69%), Gaps = 6/220 (3%) Strand=Plus/Plus Query 9196 GCCGTCAAGCTCATTTTGATCATGGTGGTGCTTTATTTTGTCTTTTGGATCCCCTACAAC 9255 ||| || ||||||||| |||| ||| | | ||| | || |||| |||||||| Sbjct 101276502 GCCATCCGGCTCATTTTTGTCATCATGGCTGTGTTTTTCATTTTCTGGACACCCTACAAT 101276561 Query 9256 GTCCTGCTCATTTTACACACCTACCAAGAGGCCATTTTTGGGCCAGACTGTGAAGCGCGG 9315 || || || | ||||| ||| | | | ||||| | ||||||||| ||| Sbjct 101276562 GTGGCTATCCTTATCTCTACCTATCAATCCGTCTTATTTGGACTTGACTGTGAA---CGG 101276618 Query 9316 CGCAGGG---TGGACATGGCCCTCTTGGTGGCTGAGATGATCGCCTGCACCCACTGCTGC 9372 ||| | ||||| || | | ||| | | ||| ||||||||| | ||||||||||| Sbjct 101276619 AGCAAGCATCTGGACCTGTTCGTGCTGGCGACGGAGGTGATCGCCTACTCCCACTGCTGC 101276678 Query 9373 GTCAACCCCGTCATCTACGCGTTTGTGGGCGAAAAGTTCC 9412 || ||||| || |||||||| ||||| || || | ||||| Sbjct 101276679 GTGAACCCAGTGATCTACGCCTTTGTTGGAGAGAGGTTCC 101276718 >seq1 Length=227556264 Score = 159 bits (176), Expect = 4e-34 Identities = 134/167 (80%), Gaps = 12/167 (7%) Strand=Plus/Minus Query 178231 AGGGTTACTTGGGTTGCCAGGCCTTGTCAGAGATGATTCAGTTTTACTTGGAGGAGGTGA 178290 |||||||| |||||||||| |||||||| |||||||| ||||||||| |||||||||||| Sbjct 65343390 AGGGTTACCTGGGTTGCCAAGCCTTGTCTGAGATGATCCAGTTTTACCTGGAGGAGGTGA 65343331 Query 178291 TGCCTCAGGCCGAGAATCACAGCGGGGGTGGAGGCCCGGACATTAAGGAGCATGTAAACT 178350 |||| || || ||||| ||| | ||| ||||| ||||||||||| |||| Sbjct 65343330 TGCCCCAAGCTGAGAACCAC------------GACCCAGACATCAAGGAGCATGTGAACT 65343283 Query 178351 CTCTGGGGGAAAAGCTAAAGACCCTTAGAGTGAGGCTGCGGCGATGT 178397 | |||||||| || || |||||||| || ||||||||||||| ||| Sbjct 65343282 CCCTGGGGGAGAATCTGAAGACCCTCAGGCTGAGGCTGCGGCGCTGT 65343236 Score = 91.5 bits (100), Expect = 2e-13 Identities = 67/78 (86%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 178462 AGCTTCAAGAAAAGGGTGTTTACAAAGCTATGAGTGAGTTTGATATTTTTATTAACTACA 178521 |||| ||||| || || || |||||||| |||||||||||||| || || || ||||||| Sbjct 65340994 AGCTCCAAGAGAAAGGCGTCTACAAAGCCATGAGTGAGTTTGACATCTTCATCAACTACA 65340935 Query 178522 TAGAAGCTTACATGACAA 178539 ||||||| |||||||||| Sbjct 65340934 TAGAAGCCTACATGACAA 65340917 Score = 84.2 bits (92), Expect = 3e-11 Identities = 55/61 (90%), Gaps = 0/61 (0%) Strand=Plus/Minus Query 178173 CAAATGAAGGACCAGCTGGACAACATGTTGTTAAATGGGTCCCTGCTGGAAGACTTTAAG 178232 ||||||||||| |||||||||||||| |||||||| | |||| ||||||| ||||||||| Sbjct 65343742 CAAATGAAGGATCAGCTGGACAACATATTGTTAAAGGAGTCCTTGCTGGAGGACTTTAAG 65343683 Query 178233 G 178233 | Sbjct 65343682 G 65343682 >seq428 Length=75711847 Score = 145 bits (160), Expect = 9e-30 Identities = 131/165 (79%), Gaps = 0/165 (0%) Strand=Plus/Minus Query 146982 CTTAAGGCCGGTCACGTGGGCCACCATGTAGGTGAGCAGCGAGTAGCTGGCTATGTTGAA 147041 ||| ||||| || | ||| || | |||||| |||||||| | ||||||||| |||||||| Sbjct 61914296 CTTCAGGCCCGTGATGTGCGCAATCATGTACGTGAGCAGGGCGTAGCTGGCGATGTTGAA 61914237 Query 147042 GGGGACCCCCAGGCCCATGTCCCCCGACCTCTGGTACAGCTGGCACGAGAGCTCCCCGTC 147101 || || || ||||||||||| ||||| ||||||||||||||||| || ||||| | || Sbjct 61914236 AGGCACACCTAGGCCCATGTCTCCCGATCTCTGGTACAGCTGGCAGGACAGCTCACTGTT 61914177 Query 147102 GGCCACGTAAAACTGGCACAGGATGTGGCACGGCGGCAGCGCCAT 147146 |||| || |||||||| || ||||| || ||||| ||||| Sbjct 61914176 CACCACATAGAACTGGCAGAGAGCATGGCATGGAGGCAGTGCCAT 61914132 Score = 86.0 bits (94), Expect = 7e-12 Identities = 115/160 (72%), Gaps = 0/160 (0%) Strand=Plus/Minus Query 147283 GCCCCAAAGTGCCTCCACTGGAAGCCGTACACTGGCCCCAGGTCGCCGGGCTTTCTGTGC 147342 |||||||| ||||||||||||||||| || ||||| |||| ||| || | |||| Sbjct 61909482 GCCCCAAAATGCCTCCACTGGAAGCCATAAACTGGACCCAAGTCCCCTTCTTCTCTGGCG 61909423 Query 147343 GAGAAGCCCGCCCGCTTGAGAAACTCGGGGGACCCGTGGGCGTCCCAGATGCCCACTCCC 147402 ||||| ||| | | | ||| || |||| || | ||| |||||||| ||||||| Sbjct 61909422 GAGAACCCCAGGCTGTCCAAAAAGTCTCGGGATCCATTGGCATCCCAGATTTTCACTCCC 61909363 Query 147403 TTGGCGGAGAGCTCCTTAGAGTCCGTGGAGCCCCGGATGA 147442 |||| || ||||| |||| | || || ||| ||| || Sbjct 61909362 TTGGAAGACAGCTCTTTAGCATTTGTAGATCCCTGGAAGA 61909323 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583432561346400