Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Macaca_20fascicularis_20[refseq_20GCF_5F000364345.1_202013-06-12] 7,601 sequences; 2,946,843,737 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq481 289 4e-73 seq313 129 8e-25 seq323 125 1e-23 seq228 120 4e-22 seq336 114 2e-20 seq434 89.7 7e-13 seq246 89.7 7e-13 >seq481 Length=152835861 Score = 289 bits (320), Expect = 4e-73 Identities = 627/934 (67%), Gaps = 17/934 (2%) Strand=Plus/Plus Query 39270 TTTAAAAGTCAACATCTAAAGAAAAATGATTATCTTCTTGT---GACATAACTCCCATTT 39326 |||| |||||| |||| || | |||| ||| ||| | | |||| |||||||| Sbjct 42596713 TTTAGAAGTCAGCATCCAAGGTAAAAGAATTCTCTGTTGGATTCGACACCACTCCCATCC 42596772 Query 39327 TTTGGTATTCACCAACGCGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTTT 39386 | || || || || | ||||| || || || || ||| || ||| ||||| | Sbjct 42596773 TCTGATACTCCTTTACTCTCTTCTCAAAGAAGTTCGT-----CTTTCAGTGAAATATTCT 42596827 Query 39387 CCATGAAATCAAACGGATTAGTTGCATTATAtttttttttAAATCCTAATTCTGAAATCA 39446 |||| || ||||| || || | | | | || |||| || | ||| | || Sbjct 42596828 CCATAAAGTCAAATGGGTTCTCTACTCTGAAAACCTTGCTAAAACCCAGTTCCGGCATG- 42596886 Query 39447 ATCTATCTGCAACAAATTCTATGTATGTTTTCATCATTTCACAATTCATTCCTATGAGTT 39506 ||| ||||| ||||| || |||||| ||||| | |||||||| || ||||| | Sbjct 42596887 -TCTGTCTGCCACAAACTCAATGTATTGCTTCATTAGAGTGCAATTCATCCCAATGAGCT 42596945 Query 39507 TAACTGGTAGAGCCTCCGTTAGAAACTCTTTTTCGATGTCTACGGCCTCTGTTATTATCG 39566 | || || | ||||| || || || || | ||| || || || | | ||| | Sbjct 42596946 TCACAGGCAAGGCCTCAGTGAGGAATTCCTGTTCTATCCGAACAGCATTGATAATTCTTT 42597005 Query 39567 ATGTTACTACCTCATCACTCGGTGGATGCAATAAATGTTTAAACATTAAGCAGGCGAAGT 39626 | ||||| ||| || ||| || | | || || ||||| | ||| || || | Sbjct 42597006 CTCTTACTCTCTCCTCCAATGGTTTGTGTACCAGGTGATTGAACATCAGGCAAGCAAAAT 42597065 Query 39627 CACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTA 39686 |||| |||| |||||||||| |||||| | ||| || ||||| ||||| |||||||| | Sbjct 42597066 CACAGTGTAAACCCTCATCTCCACTAATAAGTTCATTGGAAAAGGTGAGGCCAGGCATCA 42597125 Query 39687 GACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTA 39746 | || || || |||||||| ||||| | |||||| | |||||||||| ||||||| Sbjct 42597126 GTCCTCGTTTCTTGAGCCAGAATATCGATGCAAAATAACCAGAAAAGA---TGCCTTCCG 42597182 Query 39747 CTGCTGCAAATGCAACAAGTCTCTCTCCGTAACTTGTATCATTAT---GTATCCACTTCT 39803 |||| ||||| | |||| | || || || | | | || | ||||| | | Sbjct 42597183 CTGCAGCAAAGACTACAACACGTTCCCCATAGGTAGCTGCTTTGTCCCCAATCCAGTGCA 42597242 Query 39804 GTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGATAAT 39863 |||||||| || |||||||| ||||||||||| ||||| || ||||| ||| || | | Sbjct 42597243 AGGCCCAATCTGCCTTCTTCTTGACACAAGGCATCGTTTCAATGGCATTGAAGCGAAATT 42597302 Query 39864 GTTTTTCATCACTATCTTTAACATATGTATCTATTAACAGACTATACATTTCTGAATGGA 39923 |||| | |||||| | || || || || | | |||||||||| | ||||| | Sbjct 42597303 CCCTTTCTTTGGGATCTTTTATGTAAGTGTCAATAAGGAAACTATACATTCCAGAATGTA 42597362 Query 39924 TGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATTTGTACCTCTG 39983 ||||||| || || || || || || | ||||| | ||||| || | || || ||| Sbjct 42597363 TGTTTTCCATGGCAATTTGGAAGCCACAGAAACAGCGGGCTTCTGTCACCTGAACTTCTT 42597422 Query 39984 AACAAAATCTTTCCGCCAAATTTTCATTCACTATTCCATCACTAGCGGCAAAAAATGCCA 40043 | | ||| ||| |||| ||| |||| ||||| |||||||| || ||||| || ||| Sbjct 42597423 GGCTACATCGCTCCACCAAGTTTGCATTTACTATGCCATCACTTGC-GCAAAGAAAACCA 42597481 Query 40044 ATACATGTTTAATAAAATATTTTTCATCGGGTGTCAATTTATTCCAGTCATTGATATCTT 40103 ||||| ||||||||| | || ||||| ||| | ||||| || || | Sbjct 42597482 GAACATGGGATATAAAATATCTCTCCTCGGGCTTCAGGAATTCCCAGTGCCAAATGTCCT 42597541 Query 40104 TTGATATATCTACTTCTTCAGCTGTCCAAAACGACGCCTCTGCCTTTTTGTACATGTTCC 40163 | || || || || || || ||||| || || || || ||||| || ||||| | || Sbjct 42597542 TGGACGGGTCCACCTCCTCGGCGGTCCAGAAGGAAGCTTCCGCCTTCTTATACATCTGCC 42597601 Query 40164 ATATATCACGATATTGTATTGGAAAAATAACAAA 40197 | |||||| | || | || || || || ||||| Sbjct 42597602 AGATATCATGGTACTCGATGGGGAAGATGACAAA 42597635 Score = 226 bits (250), Expect = 4e-54 Identities = 396/566 (70%), Gaps = 14/566 (2%) Strand=Plus/Minus Query 39616 GCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAG 39675 ||| || |||| ||| |||| |||||||| || ||||| | ||| || ||||||||||| Sbjct 141149877 GCAAGCAAAGTAACAGTGTAAACCCTCATCACTGCTAATAAGTTCATTGGAAAATGTGAG 141149818 Query 39676 TCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAA 39735 |||||||| || || | || |||||||| ||||| |||||||| ||||||||||| Sbjct 141149817 GCCAGGCATCAGTCCTTGTTTCTTGAGCCAGAATATCAGTGCAAAAGAACCAGAAAAGAA 141149758 Query 39736 GATGCCTTCTACTGCTGCAAA---TGCAACAAG-TCTCTCTCCGTAACTTGTATCATTAT 39791 | ||| ||| ||| ||||| ||||||| | |||| | ||||| | | | || Sbjct 141149757 GGTGCTTTCCACTAGGGCAAAGGCTGCAACACGTTCTCCATGGGTAACGTCT-TTGTTCC 141149699 Query 39792 GTATCCACTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTATAGCAT 39851 ||||| || ||||| | || |||||||| |||| |||||||||| | || |||| Sbjct 141149698 CAATCCAACACTAGACCCAAACTGCCTTCTTCTTGACAC-AGGCATTGTTCCAATGGCAT 141149640 Query 39852 TAAAGAGATAATGTTTTTCATCACTATCTTTAACATATGTATCTATTAACAGACTATACA 39911 | |||||| | | |||| | |||||||| || ||| || || | ||||||| | Sbjct 141149639 TGAAGAGAAATTCCCTTTCTTTGTTATCTTTA--ATGTGTGTCAATAAGGAGACTATTTA 141149582 Query 39912 TTTCTGAATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAA 39971 | || ||||| |||||||| | || || || || || | || || | ||| |||| Sbjct 141149581 TGTCAGAATGTATGTTTTCTGTAGCAATTTGGAAGCCATGGAAGCAGAAGGTTTCTGTAA 141149522 Query 39972 TTTGTACCTC-TGAACAAAATCTTTCCGCCAAATTTTCATTCACTATTCCATCACTAGCG 40030 | || | || ||||| |||| |||| |||| ||||||| ||||| ||||||| || Sbjct 141149521 TCTGAATTTCTTGAAC-AAATTGTTCCACCAAGTTTTCATCTACTATCCCATCACATGCT 141149463 Query 40031 GCAAAAAATGCC--AATACATGTTTAATAAAATATTTTTCATCGGGTGTCAATTTATTCC 40088 ||||| || ||| |||| | | | ||||||||| |||| || || ||| | || Sbjct 141149462 GCAAAGAAAGCCAGAATATAGGAT--ATAAAATATCTTTCCTCAGGCTTCAGGGCTTCCC 141149405 Query 40089 AGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAACGACGCCTCTGCCT 40148 ||| || || || || | | || || | || |||| || || ||||| | | Sbjct 141149404 AGTGCCAAATGTCCTTGGACAGGTTCACCTCCTGGGCCATCCAGAAAGAAACCTCTACTT 141149345 Query 40149 TTTTGTACATGTTCCATATATCACGA 40174 | || ||| | ||||| |||||| || Sbjct 141149344 TCTTATACGTTTTCCAAATATCATGA 141149319 >seq313 Length=132586672 Score = 129 bits (142), Expect = 8e-25 Identities = 250/363 (69%), Gaps = 12/363 (3%) Strand=Plus/Minus Query 37338 TTATTTCAGTCCTGTTGATCCAAACCCTTGAGCTCCTCTATCTGTACCATCTAGAGATTG 37397 ||| ||| ||| || || |||||||| | || || || || |||| | || ||| Sbjct 63792747 TTAATTCTTTCCAGTGGAACCAAACCCACCTGAACCCCTTTCGGTGTCATCCAAAGCTTG 63792688 Query 37398 TACTTC-ATTCAGATCAGGATAATATATACGTTGATAGATTAGCTGAGCTATTCTATCGC 37456 ||||| ||| || |||||| | || |||| | || ||||| || |||| ||| | Sbjct 63792687 AACTTCTATT----TCTGGATAAAAAATCCGTTCGCAAATGAGCTGTGCAATTCGATCAC 63792632 Query 37457 CCGTATTTATTTTAAAATTACATTTTCCATTATTTATCAGAATGACTCCAATATTCCCCC 37516 || | || | || ||| || ||| ||| ||| | ||| | || |||| ||| || | Sbjct 63792631 CCTTTTTGACTTCAAACTTTTCTTTGCCAAAATTAAACAGTACAACACCAACATTTCCTC 63792572 Query 37517 TATAATCTTCATCGATTACTCCGCCTCCTACATCAATA---CCTTTTAGAGACAAACCCG 37573 ||||||||||||| || || || |||||||||||||| |||| || ||| || | Sbjct 63792571 TATAATCTTCATCTATGACACCAGCTCCTACATCAATAAAGTGTTTTGCAGCCAAGCCTG 63792512 Query 37574 ATCTAGGAGCTATTCTTCCATAACAAAATTTGGGCATAGACATCCGAATATCTGTTTTAA 37633 | || ||||||| |||||||||||| || | | ||| |||| || ||||| | Sbjct 63792511 ACCTTGGAGCTACTCTTCCATAACACCCAGAAGGGAGCGCTATCTGAATGTCCGTTTTCA 63792452 Query 37634 TCAATTGTCTTTCTCC--AGGAAGGATGGTATAATCGTACGCGCTATATAAATCATATCC 37691 ||| | |||||||| ||| || || || ||||| || || || || | || || || Sbjct 63792451 -CAAGAG-CTTTCTCCATAGGTAGTATTGTGTAATCATAGGCACTGTACAGGTCGTAGCC 63792394 Query 37692 CGC 37694 ||| Sbjct 63792393 CGC 63792391 >seq323 Length=111193037 Score = 125 bits (138), Expect = 1e-23 Identities = 102/124 (82%), Gaps = 0/124 (0%) Strand=Plus/Plus Query 39639 CCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTT 39698 |||||||||| || || | ||| || ||||||||||| |||||||| || || || || | Sbjct 100856187 CCTCATCTCTGCTGATAAGTTCATTGGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTCT 100856246 Query 39699 TGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATG 39758 ||||||| ||||| | |||||||| || ||||||||||||||||| ||||| ||||| | Sbjct 100856247 TGAGCCAGAATATCGATGCAAAAGAACCGGAAAAGAAGATGCCTTCCACTGCGGCAAAGG 100856306 Query 39759 CAAC 39762 | || Sbjct 100856307 CTAC 100856310 >seq228 Length=146850525 Score = 120 bits (132), Expect = 4e-22 Identities = 107/134 (80%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 39641 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTTTG 39700 |||||||| || || | ||| || ||||| |||||||| ||||| ||||| | ||| || Sbjct 103367671 TCATCTCTGCTGATGAGTTCATTGGAAAAAGTGAGTCCTGGCATAAGACCTCTCTTCTTT 103367730 Query 39701 AGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATGCA 39760 ||||| ||||| |||||||||||||| || ||||| || |||||||| || ||||| || Sbjct 103367731 AGCCAGAATATAGCAGCAAAAGATCCTGAGAAGAAAATTCCTTCTACAGCAGCAAAGGCC 103367790 Query 39761 ACAAGTCTCTCTCC 39774 || | ||| || || Sbjct 103367791 ACCACTCTTTCCCC 103367804 >seq336 Length=130733371 Score = 114 bits (126), Expect = 2e-20 Identities = 126/168 (75%), Gaps = 0/168 (0%) Strand=Plus/Plus Query 70334 CACTAAATAGtttttttGTTTCCTTGTGTAAATTTGATATGGCTATTCTGGCTGCTAGAA 70393 |||| || | ||| |||||||| |||||||| || || | || || |||||||| || | Sbjct 66536562 CACTGAACACTTTCTTTGTTTCTTTGTGTAAGTTAGAGACAGCAATCCTGGCTGCCAGGA 66536621 Query 70394 TAGCATAGTCAGGATGTTGTGTAGTACAAGTAGCTGCTATTTCCGCAGCTAACGTATCTA 70453 ||||||||||||| || | ||||| | || || ||| |||| ||||| || ||||||| Sbjct 66536622 TAGCATAGTCAGGGTGCTTAGTAGTCAAGGTTGCAGCTGTTTCAGCAGCCAAAGTATCTA 66536681 Query 70454 ATTCTATAGTTGTAACTCCGTTATATAGCCCTTGAATAACTTTCATGG 70501 ||| | || || || || | || | ||||| || |||||||||| Sbjct 66536682 GTTCCACTGTGGTGACCCCACTGTACAAGCCTTGGATTACTTTCATGG 66536729 Score = 84.2 bits (92), Expect = 3e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 69595 ACTCGTTTCATAAATAGATCGGGAATCCAAAGAGCTATAAAGAGATCTCTGGTTCTATTT 69654 ||||||||||| || ||||| |||||||||||||| | || |||||||||| | | Sbjct 66516550 ACTCGTTTCATGAAGAGATCCGGAATCCAAAGAGCAAAGAAAAGATCTCTGGCACGCTGC 66516609 Query 69655 TCTTCATTTCCTGTAttttttttAAGATCGAGAAACTCCATAATATCAGAATGCCATGGT 69714 || || |||||||| || || || | ||| || || || | || || ||||||| || Sbjct 66516610 TCCTCCTTTCCTGTGTTCTTCTTTAAATCAAGGAATTCAAAGATGTCTAAATGCCAAGGC 66516669 Query 69715 TCTAGATATATCGC 69728 || || || || || Sbjct 66516670 TCCAGGTAAATAGC 66516683 >seq434 Length=59248254 Score = 89.7 bits (98), Expect = 7e-13 Identities = 182/265 (69%), Gaps = 9/265 (3%) Strand=Plus/Minus Query 37338 TTATTTCAGTCCTGTTGATCCAAACCCT--TGAGCTCCTCTATCTGTACCATCTAGAGAT 37395 ||| ||| ||| || || ||||| ||| ||| | ||| | ||| |||| | || | Sbjct 53168811 TTAATTCTTTCCAGTAGAACCAAAACCTCCTGAACCCCTTTTGGTGT--CATCCAAAGCT 53168754 Query 37396 TGTACTTCATTCAGATCAGGATAATATATACGTTGATAGATTAGCTGAGCTATTCTATCG 37455 || ||||| | | || ||||| | || |||| | | || ||||| || |||| ||| Sbjct 53168753 TGAACTTCTTCTATTTCTGGATAGAACATCCGTTCACAAATGAGCTGTGCAATTCGATCA 53168694 Query 37456 CCCGTATTT-ATTTTAAAATTACATTTTCCATTATTTATCAGAATGACTCCAATATTCCC 37514 | ||||| | || ||| || ||| ||| ||| | | | || |||||||| || Sbjct 53168693 CGT-TATTTGACTTCAAACTTTTCTTTGCCAAAATTAAAGACTACAACACCAATATTTCC 53168635 Query 37515 CCTATAATCTTCATCGATTACTCCGCCTCCTACATCAATACC---TTTTAGAGACAAACC 37571 |||||||||||||| | || || |||||||||| | | | |||| || ||| || Sbjct 53168634 TCTATAATCTTCATCTGTGACACCAGCTCCTACATCTACAACGGGTTTTGCAGCCAAGCC 53168575 Query 37572 CGATCTAGGAGCTATTCTTCCATAA 37596 || | ||||||| |||||||||| Sbjct 53168574 AGACCGTGGAGCTACTCTTCCATAA 53168550 >seq246 Length=133195287 Score = 89.7 bits (98), Expect = 7e-13 Identities = 223/334 (67%), Gaps = 10/334 (3%) Strand=Plus/Plus Query 37372 CCTCTATCTGTACCATCTAGAGATTGTACTTCATTCAGATCAGGATAATATATACGTTGA 37431 || || || || |||| | || ||| ||||| | | || |||||| | || |||| Sbjct 91140577 CCCCTTTCGGTGTCATCCAAAGCTTGAACTTCTTCTATTTCTGGATAAAAAATCCGTTCG 91140636 Query 37432 TAGATTAGCTGAGCTATTCTATCGCCCGTATTTATTTTAAAATTACATTTTCCATTATTT 37491 | || ||||| || |||| ||| | | | || | || ||| || ||| ||| || Sbjct 91140637 CAAATGAGCTGTGCAATTCGATCACACTTTTTGACTTCAAACTTTTCTTTGCCAAAGTTA 91140696 Query 37492 ATCAGAATGACTCCAATATTCCCCCTATAATCTTCATCGATTACTCCGCCTCCTACATCA 37551 | ||| | | |||| ||| || |||||||||||||| || || || ||||||||||| Sbjct 91140697 AACAGTACACCACCAACATTTCCTCTATAATCTTCATCTATGACACCAGCTCCTACATCA 91140756 Query 37552 ATA----CCTTTTAGAGACAAACCCGATCTAGGAGCTATTCTTCCATAACAAAATTTGGG 37607 ||| ||| || ||| || || ||||||| |||||||||||| || Sbjct 91140757 ATAAAGTGTTTTGCAAGCCAAGCCTGACTGTGGAGCTACTCTTCCATAACACCCAGAAGG 91140816 Query 37608 CATAGACATCCGAATATCTGTTTTAATCAATTGTCTTTCT--CCAGGAAGGATGGTATAA 37665 | | ||| |||| || ||||| | ||| | |||||| ||||| | || || ||| Sbjct 91140817 GAGCGCTATCTGAATGTCCGTTTTCA-CAAGAG-CTTTCTCCCCAGGTGGTATTGTGTAA 91140874 Query 37666 TCGTACGCGCTATATAAAT--CATATCCCGCGGC 37697 || || || || || | | | || |||||||| Sbjct 91140875 TCATAGGCACTGTACAGGTCCCGTAGCCCGCGGC 91140908 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686843535077640