Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Macaca_20fascicularis_20[refseq_20GCF_5F000364345.1_202013-06-12] 7,601 sequences; 2,946,843,737 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq481 228 6e-55 seq323 113 4e-20 seq428 98.7 8e-16 seq293 93.3 3e-14 seq228 86.0 5e-12 >seq481 Length=152835861 Score = 228 bits (252), Expect = 6e-55 Identities = 616/924 (67%), Gaps = 45/924 (5%) Strand=Plus/Minus Query 43677 TGCTTACAGAAAATCCGTCTAGGTTTGTCGTGTTTCCAATTCAATATCATGACATATGGC 43736 |||| | |||||| || | | |||||| | || || || | || ||||| || |||| Sbjct 42597658 TGCTGAGAGAAAACCCCTGCCGTTTTGTCATCTTCCCCATCGAGTACCATGATATCTGGC 42597599 Query 43737 AAATGTACAAAAAAGCACAGGCGTCATTTTGGACAGCAGAAGAAGTTGATTTGACTAAAG 43796 | ||||| || || || | || || || ||||| || || || || || | | || | Sbjct 42597598 AGATGTATAAGAAGGCGGAAGCTTCCTTCTGGACCGCCGAGGAGGTGGACCCGTCCAAGG 42597539 Query 43797 AC--TTAGCACATTGGATTGCATTAAAACCACAAGAAAAACATTTTATATCTTTGGTTTT 43854 || || |||| | ||| | | || || | || | | |||||||||| ||| | Sbjct 42597538 ACATTTGGCACTGGGAATTCC--TGAAGCCCGAGGAGAGATATTTTATATCCCATGTTCT 42597481 Query 43855 GGCGTTTTTTGCTGCGAGCGACGGGATAGTCAATGAAAATTTGGTTAGTCGGTTTGCGCA 43914 || || ||||| || || || || ||||| |||| ||| ||||| || | | || Sbjct 42597480 GGTTTTCTTTGC-GCAAGTGATGGCATAGTAAATGCAAACTTGGTGGAGCGATGTAGCCA 42597422 Query 43915 AGAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAATAT 43974 ||||||||| | ||||||| || ||||| | ||| || ||||||||||| ||||| || Sbjct 42597421 AGAAGTTCAGGTGACAGAAGCCCGCTGTTTCTGTGGCTTCCAAATTGCCATGGAAAACAT 42597362 Query 43975 TCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGATGGGCACGAGAAGCA 44034 ||||| | |||||| ||| | || || || || ||||| |||||| | || | | | Sbjct 42597361 ACATTCTGGAATGTATAGTTTCCTTATTGACACTTACATAAAAGATCCCAAAGAAAGGGA 42597302 Query 44035 ---TCGATTGTTTAATGCGATAGAAACAGTACCTGCGATTAAACATAAAGCAGACTGGGC 44091 ||| || ||||| || ||||| | ||| | || | || ||||| ||||| Sbjct 42597301 ATTTCG---CTTCAATGCCATTGAAACGATGCCTTGTGTCAAGAAGAAGGCAGATTGGGC 42597245 Query 44092 CCTTAAATGGA-TAAATTCAAA--TGATTCTTTTGGAGAACGACTTGTCGCGTTTGCAGT 44148 | | | |||| | |||| | | | | ||| ||||| |||| | ||||| | Sbjct 42597244 CTTGCACTGGATTGGGGACAAAGCAGCTACCTATGGGGAACGTGTTGTAGTCTTTGCTGC 42597185 Query 44149 TGTGGAAGGCATTTTCTTTTCAGGATCGTTTGCGGCCATATTTTGGTTAAAGAAACGAGG 44208 | |||||||| ||||||| || | ||||| | ||||| ||| | ||||||||||| Sbjct 42597184 AGCGGAAGGCA---TCTTTTCTGGTTATTTTGCATCGATATTCTGGCTCAAGAAACGAGG 42597128 Query 44209 TTTGATGCCTGGGTTGACGTTTTCAAATGAGTTAATAAGTCGTGATGAAGGCTTACATTG 44268 |||||||||| | || ||||| ||||| | || ||| | ||||| || ||||| || Sbjct 42597127 ACTGATGCCTGGCCTCACCTTTTCCAATGAACTTATTAGTGGAGATGAGGGTTTACACTG 42597068 Query 44269 CGATTTTGCTTGCTTGTTACTTGGAT-ATCTAGGAGACGATAAGCCTTCATGTA--AGAC 44325 |||||||||||| || | || || | || | | || || || | || | ||| Sbjct 42597067 TGATTTTGCTTGCCTGAT-GTTCAATCACCTGGTACAC---AAACCAT--TGGAGGAGAG 42597014 Query 44326 AATTACAGATATTGTTGTAGAGGCAGTAAAGATAGAACAAGAATTTATGACAACAGCATT 44385 | | | ||| | || | | || || ||||||||| ||||| | || || || Sbjct 42597013 AGTAAGAGAAAGAATTATCAATGCTGTTCGGATAGAACAGGAATTCCTCACTGAGGCCTT 42596954 Query 44386 ACCTGTAAATTTAATAGGAATGAA-TGAACTTTTGATGAACCAATATATTGAATACATTG 44444 ||||| || | || || ||||| || || | | ||||| ||||| ||||| | | | Sbjct 42596953 GCCTGTGAAGCTCATTGGGATGAATTGCAC-TCTAATGAAGCAATACATTGAGTTTGTGG 42596895 Query 44445 CAGATCGTTTAC-TTTTGGAACTGGGTTGCGATAAACACTATATT----GTACAAAACCC 44499 |||| | || | ||||||||||| | | || | || ||| | ||||| Sbjct 42596894 CAGACAG---ACATGCCGGAACTGGGTT----TTAGCAAGGTTTTCAGAGTAGAGAACCC 42596842 Query 44500 GTTTGATTTTATGGAAAATATTTCGTTGGAAGGCAAAACAAACTTTTTTGAAAAACGCGT 44559 ||||| |||||||| |||||||| || ||| || ||||| ||||| || | || Sbjct 42596841 ATTTGACTTTATGGAGAATATTTCACTGAAAG-----ACGAACTTCTTTGAGAAGAGAGT 42596787 Query 44560 TGGAGAATATCAGCGAATGGGCGT 44583 || |||||| | ||||| || Sbjct 42596786 AAAGGAGTATCAGAGGATGGGAGT 42596763 >seq323 Length=111193037 Score = 113 bits (124), Expect = 4e-20 Identities = 92/109 (84%), Gaps = 2/109 (2%) Strand=Plus/Minus Query 43913 CAAGAAGTTCA-ATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAA 43971 ||||||||||| ||||| |||||| || ||||| ||||| || ||||||||||| ||||| Sbjct 100858399 CAAGAAGTTCAGATTAC-AGAAGCCCGCTGTTTCTATGGCTTCCAAATTGCCATGGAAAA 100858341 Query 43972 TATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGAT 44020 || ||||| |||||||| |||||||| || || || ||||| |||||| Sbjct 100858340 CATACATTCTGAAATGTATAGTCTTCTTATTGACACTTACATAAAAGAT 100858292 Score = 93.3 bits (102), Expect = 3e-14 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 44123 GGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGATCGTTTGCG 44182 || ||||| | || || ||||| | ||||||||||| |||||||| || || ||||| Sbjct 100856322 GGTGAACGTGTCGTAGCCTTTGCCGCAGTGGAAGGCATCTTCTTTTCCGGTTCTTTTGCA 100856263 Query 44183 GCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATGAGTTA 44242 | ||||| ||| | ||||||||||| |||||||||| | || ||||| ||||| | Sbjct 100856262 TCGATATTCTGGCTCAAGAAACGAGGACTGATGCCTGGCCTCACATTTTCCAATGAACTT 100856203 Query 44243 ATAAGTCGTGATGA 44256 || || | ||||| Sbjct 100856202 ATCAGCAGAGATGA 100856189 >seq428 Length=75711847 Score = 98.7 bits (108), Expect = 8e-16 Identities = 113/152 (74%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 41047 TGATGGCATTGCCACCTTGTCATTTGTTATGTCAGTTTTACGTTTGCAATGGTGAACTGT 41106 |||||||| |||| || || ||| | || ||||| || || || |||| |||| Sbjct 61914130 TGATGGCACTGCCTCCATGCCATGCTCTCTGCCAGTTCTATGTGGTGAACAGTGAGCTGT 61914189 Query 41107 CATGTCAATTGTATCAAAGATCAGGTGACATGGGACTAGGGGTCCCGTTTAACATAGCGA 41166 | || || |||| || ||||| || |||||||| ||||| || || || ||||| || | Sbjct 61914190 CCTGCCAGCTGTACCAGAGATCGGGAGACATGGGCCTAGGTGTGCCTTTCAACATCGCCA 61914249 Query 41167 GTTATGCTCTGCTCACGTATATGATTGCACAC 41198 | || || ||||||||||| |||||||| ||| Sbjct 61914250 GCTACGCCCTGCTCACGTACATGATTGCGCAC 61914281 >seq293 Length=137757926 Score = 93.3 bits (102), Expect = 3e-14 Identities = 201/297 (68%), Gaps = 4/297 (1%) Strand=Plus/Minus Query 77267 GCCTCCTCATTGCCTTTGTATCCTGCGTGTCCTGGGATGTGCAGCCAGACAACCTCCAGC 77326 || || ||||||||| | |||| | || || || | ||||| ||| | |||| | Sbjct 34578796 GCTTCTTCATTGCCTATAAATCCCGAATGACCAGGAAAGTGCATCCACTGAGTGTCCATC 34578737 Query 77327 TCCAAATTGAGTTGGTCCAGCTTCATAAAGTCATCCTTGTTGA-CAACTGACCCTCCGC- 77384 || | |||| ||||| || ||||| || ||||||| || || | | || Sbjct 34578736 CCCTGACTGAGCCTCTCCAGTGCCACGAAGTCCTCTTTGTTGATCACCTCTTTCCCTGCA 34578677 Query 77385 CATGCAGCCTCCAGCCGTTCTGCTTCCAGTTCTTAACCCACTTAGTCACACCATTGATGG 77444 | || | |||| || || | |||||| | | ||| || ||||| | |||||| || | Sbjct 34578676 CTTGT--CTTCCACCCATTTTCCTTCCAACTTTGAACACAGTTAGTTATACCATTTATAG 34578619 Query 77445 TGAACATGCTGTCTGTGTAGACGACCAGCTTCTTGATTTTGTTCTCCTGAGCTTGTTGCA 77504 | ||||| |||||||| || | ||||| || |||| || | ||| ||||||| | Sbjct 34578618 TAAACATACTGTCTGTATACAGAACCAGTTTACTGATGTTTTGAGCCTTTGCTTGTTCAA 34578559 Query 77505 GTGCTTTGGATGCAGCCTGGATTTCAGCGCGCTGGTTTGTCTGTTGCCCCACAAGTC 77561 | |||| | || || |||||||| || | |||||||||||| |||| ||||| Sbjct 34578558 TGGTTTTGCAGGCTGCATGGATTTCTGCTCTTTGGTTTGTCTGTCGCCCAGGAAGTC 34578502 >seq228 Length=146850525 Score = 86.0 bits (94), Expect = 5e-12 Identities = 68/82 (83%), Gaps = 0/82 (0%) Strand=Plus/Minus Query 44493 AAAACCCGTTTGATTTTATGGAAAATATTTCGTTGGAAGGCAAAACAAACTTTTTTGAAA 44552 |||| || ||||||||||||||||| ||||| || ||||| |||||||| || ||||| | Sbjct 103356817 AAAATCCTTTTGATTTTATGGAAAACATTTCTTTAGAAGGAAAAACAAATTTCTTTGAGA 103356758 Query 44553 AACGCGTTGGAGAATATCAGCG 44574 |||| ||| || |||||||| Sbjct 103356757 AACGAGTTTCGGAGTATCAGCG 103356736 Score = 82.4 bits (90), Expect = 6e-11 Identities = 69/85 (81%), Gaps = 0/85 (0%) Strand=Plus/Minus Query 43698 GGTTTGTCGTGTTTCCAATTCAATATCATGACATATGGCAAATGTACAAAAAAGCACAGG 43757 |||||||| | |||||||| || || | ||| || ||| ||||||| ||| | ||||||| Sbjct 103381759 GGTTTGTCATCTTTCCAATCCAGTACCCTGATATTTGGAAAATGTATAAACAGGCACAGG 103381700 Query 43758 CGTCATTTTGGACAGCAGAAGAAGT 43782 | || || |||||||||||||| || Sbjct 103381699 CTTCCTTCTGGACAGCAGAAGAGGT 103381675 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397419180794005