Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Macaca_20fascicularis_20[refseq_20GCF_5F000364345.1_202013-06-12] 7,601 sequences; 2,946,843,737 total letters Query= NC_028238.1 Length=188534 Score E Sequences producing significant alignments: (Bits) Value seq313 96.9 4e-15 seq93 86.0 8e-12 >seq313 Length=132586672 Score = 96.9 bits (106), Expect = 4e-15 Identities = 196/291 (67%), Gaps = 0/291 (0%) Strand=Plus/Minus Query 22643 TATTTCTGGATGCGCTATTTTTTCAAATATAAGTTGTGCTACTCTATCGCCCTTATTTAC 22702 ||||||||||| || ||| | || || ||||| | || ||| ||||| || || Sbjct 63792681 TATTTCTGGATAAAAAATCCGTTCGCAAATGAGCTGTGCAATTCGATCACCCTTTTTGAC 63792622 Query 22703 GTAAAATACATCCTTACTAAAATTAAATAACAATATACCTATATTTCCCCTGTAATCTCT 22762 | ||| || || | ||||||||| | | | ||| | |||||| || |||||| Sbjct 63792621 TTCAAACTTTTCTTTGCCAAAATTAAACAGTACAACACCAACATTTCCTCTATAATCTTC 63792562 Query 22763 ATCTATCACACCCGCGCCTACATCGATAAAATGATTACATGCCAATCCCGATCTAGGAGA 22822 |||||| ||||| || |||||||| ||||| || || ||||| || || || |||| Sbjct 63792561 ATCTATGACACCAGCTCCTACATCAATAAAGTGTTTTGCAGCCAAGCCTGACCTTGGAGC 63792502 Query 22823 TATTCTTCCATATAATCCTTCCGGTATATCTATTATAATATCAGTCATTACTAATTGTTT 22882 || ||||||||| | || || | |||| ||| || || | || | ||| Sbjct 63792501 TACTCTTCCATAACACCCAGAAGGGAGCGCTATCTGAATGTCCGTTTTCACAAGAGCTTT 63792442 Query 22883 ACCCATAGGTTCTATTACGTAATTATACGCGCTATATAGATCATATCCTGC 22933 |||||||| |||| ||||| ||| || || || || || || || || Sbjct 63792441 CTCCATAGGTAGTATTGTGTAATCATAGGCACTGTACAGGTCGTAGCCCGC 63792391 >seq93 Length=170955103 Score = 86.0 bits (94), Expect = 8e-12 Identities = 113/157 (72%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 32674 TGTGGTTATATTTTATCTCTAAAGGTATAGAATATCTAGATACTATTTTCTTCATAATGA 32733 |||||| || ||| | |||||||| | || ||| | || || | || || || ||| Sbjct 93936542 TGTGGTGGTACTTTGTTTCTAAAGGAGTTGAGTATTTGGACACAGTGTTTTTTATTCTGA 93936601 Query 32734 GAAAGAAATTTAACCAAGTTAGCTTTTTGCACGTATACCACCATTTTACCATGTTTACTT 32793 |||||||| ||||| ||| || | || || || || || | ||| |||||||| | Sbjct 93936602 GAAAGAAAAACAACCAGGTTTCTTTCCTTCATGTGTATCATCACTGTACGATGTTTACCT 93936661 Query 32794 TAGGATGGATAGGGATTAAATGGTTTGCAGGAGGACA 32830 | | ||||| || ||||| ||| ||||||||||||| Sbjct 93936662 TGTGGTGGATTGGAATTAAGTGGGTTGCAGGAGGACA 93936698 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 603123490284240