Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Macaca_20fascicularis_20[refseq_20GCF_5F000364345.1_202013-06-12] 7,601 sequences; 2,946,843,737 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq428 138 1e-27 seq375 114 1e-20 seq163 114 1e-20 seq355 100 2e-16 seq30 95.1 1e-14 seq202 93.3 4e-14 seq228 87.8 2e-12 seq463 86.0 5e-12 >seq428 Length=75711847 Score = 138 bits (152), Expect = 1e-27 Identities = 169/231 (73%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| ||||| || || || || ||||| | || || || || || || || Sbjct 71761969 CATGCAGATCTTTGTGAAGACCCTCACGGGCAAAACCATCACCCTCGAGGTCGAGCCCAG 71761910 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 ||| | ||||||| |||||| |||||||||||||| || || || ||||| || || Sbjct 71761909 TGACACCATTGAGAATGTCAAAGCCAAAATTCAAGACAAGGAGGGTATCCCACCTGACCA 71761850 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 |||||| | |||| ||||||||||| ||||||| | || | || || ||||| Sbjct 71761849 GCAGCGTCTGATATTTGCCGGCAAACAGCTGGAAGATGGCCGCACTCTCTCAGACTACAA 71761790 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||| || || ||||| ||| | || |||| ||||| |||| |||||||| Sbjct 71761789 CATCCAGAAAGAGTCCACCCTGCACCTGGTGTTGCGCCTGCGAGGTGGCAT 71761739 >seq375 Length=80997621 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || ||||| |||||||||||| | || || || || ||||| || Sbjct 16482454 ATGCAGATCTTCGTGAAAACCCTGACCGGCAAGACCATCACCCTGGAGGTGGAGCCCAGT 16482395 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || || | || || || || ||||| ||||||||||| || ||||| || Sbjct 16482394 GACACCATCGAAAATGTGAAGGCCAAGATCCAAGATAAAGAAGGCATCCCCCCCGACCAG 16482335 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | | || | || ||||| || ||||||| | || |||| || |||||| Sbjct 16482334 CAGAGGCTCATCTTTGCAGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGACTACAAC 16482275 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGC 27215 || || |||||||| ||| | || |||| |||| || |||||||| Sbjct 16482274 ATCCAGAAGGAGTCAACCCTGCACCTGGTCCTGCGCCTGAGGGGTGGC 16482227 Score = 109 bits (120), Expect = 5e-19 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || || |||||||||||| | || || || |||||||| || Sbjct 16482682 ATGCAGATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTGGAAGTGGAGCCCAGT 16482623 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || || | || || || || || || ||||||||||| || ||||| || Sbjct 16482622 GACACCATCGAAAATGTGAAGGCCAAGATCCAGGATAAAGAAGGCATCCCTCCCGACCAG 16482563 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | | || | || ||||| || ||||||| | || |||| || |||||| Sbjct 16482562 CAGAGGCTCATCTTTGCAGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGACTACAAC 16482503 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || |||||||||||| | || |||| |||| || | ||||| || Sbjct 16482502 ATCCAGAAGGAGTCGACCCTGCACCTGGTCCTGCGCCTGAGAGGTGGTAT 16482453 Score = 109 bits (120), Expect = 5e-19 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || || |||||||||||| | || || ||||| ||||| || Sbjct 16482910 ATGCAGATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTTGAGGTGGAGCCCAGT 16482851 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || || | || || ||||| ||||| || |||||||| || ||||| || Sbjct 16482850 GACACCATCGAAAATGTGAAGGCCAAAATCCAAGATAAGGAAGGCATTCCCCCCGACCAG 16482791 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | | || | || ||||| || ||||||| | || |||| || |||||| Sbjct 16482790 CAGAGGCTCATCTTTGCAGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGACTACAAC 16482731 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || || ||||||||| | || |||| |||| || | ||||| || Sbjct 16482730 ATCCAGAAAGAGTCGACCCTGCACCTGGTCCTGCGCCTGAGAGGTGGTAT 16482681 >seq163 Length=189454096 Score = 114 bits (126), Expect = 1e-20 Identities = 166/233 (71%), Gaps = 5/233 (2%) Strand=Plus/Plus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| ||||| || || || | ||||| | || || ||||| || || || Sbjct 87956049 CATGCAGATCTTTGTGAAGACCCTCCCGGGCAAAACCATCACCCTTGAGGTCGAGCCCAG 87956108 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 ||| | ||||||| |||||| |||||||||||||| || || || ||||| || || Sbjct 87956109 TGACACCATTGAGAACGTCAAAGCCAAAATTCAAGACAAGGAGGGTATCCCACCTGACCA 87956168 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGA--CCGTTTCCGATTAC 27164 |||||| | |||| ||| ||||||| ||||||| | | | | || || ||| Sbjct 87956169 GCAGCGTCTGATATTTGCCAGCAAACAGCTGGAAGATGGCCGCACTCTCTCTCAGACTAC 87956228 Query 27165 AACATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||||| ||| ||||| ||| | || |||| ||||| |||| ||| |||| Sbjct 87956229 AACATCCAA---GAGTCCACCCTGCACCTGGTGTTGCGCCTGCGAGGTAGCAT 87956278 >seq355 Length=112612857 Score = 100 bits (110), Expect = 2e-16 Identities = 162/233 (70%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||| | ||||| | || || || |||||| | || | ||||| || || || Sbjct 56763255 ATGCAGCTCTTTGTGGAGACCCTCACGGGCAAGACCATCATCCTTGAGGTCGAGCCCAGT 56763196 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | | ||||| ||||| ||||||||||||||||| || || ||||| || || Sbjct 56763195 TACACCACTGAGAATTTCAAAGCCAAAATTCAAGACAAAGAGGGTATCCCACCTGACCAG 56763136 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| || | |||| || ||||| || |||| || | | || | || || |||||| Sbjct 56763135 CAGTGTCTGATATTTGCTGGCAAGCAGCTGGAGGATGGCTGCACTCTCTCAGACTACAAC 56763076 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCATAAC 27220 || ||||| |||| ||| | || ||||| ||| ||| |||||||| || Sbjct 56763075 ATCCAAAAACAGTCCACCATGCACCTGGTTCTGCACCTGCAAGGTGGCATTAC 56763023 >seq30 Length=192460366 Score = 95.1 bits (104), Expect = 1e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| || || || || |||||| | || |||||||| || | || Sbjct 20003285 ATGCAGATCTTTGTGAAGACCCTTACGGGCAAGACCATCACTCTTGAGGTCAAGCCCAGT 20003226 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | | |||| |||||| |||||||||||||| || || || ||||| || || Sbjct 20003225 GACACCAATGAGGATGTCAAAGCCAAAATTCAAGACAAGGAGGGTATCCCACCTGACCAG 20003166 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||| | | ||| ||||||||||| |||| || | || | || || ||| || Sbjct 20003165 CAGCATCTGATACTTGCCGGCAAACAGCTGGAGGATGGCCGAACTCTCTCAGACTACGAC 20003106 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || | ||||| ||| | || |||| |||| |||| ||| |||| Sbjct 20003105 ATCTGGGAAGAGTCCACCCTGCACCTGGTGCTGCGCCTGCGAGGTAGCAT 20003056 >seq202 Length=171882078 Score = 93.3 bits (102), Expect = 4e-14 Identities = 160/231 (69%), Gaps = 1/231 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| || || || || |||||| | || || ||||| | || || Sbjct 122414460 ATGCAGATCTTTGTGAAGACCCTCACGGGCAAGACCATCACCCTTGAGATTGAGCCCAGT 122414519 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGG-CATACCACCCGATCA 27106 ||| | ||| ||| |||||| |||||||||||||| || || || ||||| || || Sbjct 122414520 GACACCATTTAGAATGTCAAAGCCAAAATTCAAGACAAGGAGGGATATCCCACCTGACCA 122414579 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 |||||| | ||| || || ||||| |||| || | || | || | ||||| Sbjct 122414580 GCAGCGTCTGATACTTGCTGGGAAACAGCTGGAGGATGGCCGCACTCTCTCAGGCTACAA 122414639 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||| || || ||||| ||| || | |||| || | ||| |||||||| Sbjct 122414640 CATCCAGAAAGAGTCCACCCTAAACCTGGTGCTGTGCCTGCAAGGTGGCAT 122414690 >seq228 Length=146850525 Score = 87.8 bits (96), Expect = 2e-12 Identities = 160/233 (69%), Gaps = 6/233 (3%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||||| ||||| || || || || |||||| | || |||| | || || Sbjct 124587376 ATGCAGACCTTTGTGAAGACCCTCACAGGCAAGAC-----CT-TTGAGATCGAGCCCAGT 124587429 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | | ||||| ||||| |||||||||||||| || ||||| ||||| || || Sbjct 124587430 GACACCACTGAGAATGTCAACGCCAAAATTCAAGACAAGGAGGGCATCCCACCTGACCAG 124587489 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||| | | ||| || |||||||| |||| || | | || | || || |||||| Sbjct 124587490 CAGCATCTGATACTTGCGGGCAAACAGCTGGAGGATGGCTGCACTCTCTCAGACTACAAC 124587549 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCATAAC 27220 || || || ||||| || | || |||| |||| ||| |||||||| || Sbjct 124587550 ATCCAGAAAGAGTCCACTCTGCACATGGTGCTGCGCCTGCAAGGTGGCATTAC 124587602 >seq463 Length=78541002 Score = 86.0 bits (94), Expect = 5e-12 Identities = 157/229 (69%), Gaps = 1/229 (0%) Strand=Plus/Minus Query 26993 GATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCCGACTC 27052 ||| ||||| || || || || |||||| | || | ||||| || || ||| ||| | Sbjct 36008085 GATCTTTGTGAAGACCCTCACAGGCAAGACCATCGCCCTTGAGGTCGAGCCGAGTGACGC 36008026 Query 27053 GATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAACAGCG 27112 | ||||| | |||| |||||||||||||| | ||||| | ||| || || ||| | Sbjct 36008025 CACTGAGAATGCCAAAGCCAAAATTCAAGACAAGTAGGGCATCCTACCTGACCAGCAGTG 36007966 Query 27113 TTTAAT-ATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAACATTC 27171 | | || || | |||||| | |||| || | || | || || |||||||| | Sbjct 36007965 TCTGATAATTTGAGGGCAAATAGCTGGAGGATGGCCGCACTCTCTCAGACTACAACATCC 36007906 Query 27172 AAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCATAAC 27220 | || ||||| ||| | || || | |||| |||| |||||||| || Sbjct 36007905 AGAAAGAGTCCACCCTGCACCTGATGCTGCGCCTGCGAGGTGGCATTAC 36007857 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434877077315520