Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Macaca_20fascicularis_20[refseq_20GCF_5F000364345.1_202013-06-12]
7,601 sequences; 2,946,843,737 total letters
Query= NC_029996.1
Length=134272
Score E
Sequences producing significant alignments: (Bits) Value
seq428 116 3e-21
seq163 86.0 5e-12
>seq428
Length=75711847
Score = 116 bits (128), Expect = 3e-21
Identities = 169/236 (72%), Gaps = 2/236 (1%)
Strand=Plus/Plus
Query 39057 GCCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGC 39116
||| |||| | ||| ||||||| || || ||| |||||| || || || || || |
Sbjct 71761741 GCCACCTCGCAGGCGCAACACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCTGA 71761800
Query 39117 AAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTC-GGTGG 39175
|| || || | || || ||||||||||| |||||||| |||||||||||||| |||||
Sbjct 71761801 GAGAGTGCGGCCATCTTCCAGCTGTTTGCCGGCAAATATCAGACGCTGCTGGTCAGGTGG 71761860
Query 39176 GCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCA 39235
| | | ||| ||||| ||||| ||||| || | | || || || | ||| |
Sbjct 71761861 G-ATACCCTCCTTGTCTTGAATTTTGGCTTTGACATTCTCAATGGTGTCACTGGGCTCGA 71761919
Query 39236 CGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCATCTTTACG 39291
| || | ||||| |||| ||||| || || || |||||||| ||||| ||| ||
Sbjct 71761920 CCTCGAGGGTGATGGTTTTGCCCGTGAGGGTCTTCACAAAGATCTGCATGTTTGCG 71761975
>seq163
Length=189454096
Score = 86.0 bits (94), Expect = 5e-12
Identities = 162/234 (69%), Gaps = 7/234 (3%)
Strand=Plus/Minus
Query 39061 CCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGT 39120
|||| | ||| ||||||| || || ||| ||||| | || || || || | ||
Sbjct 87956272 CCTCGCAGGCGCAACACCAGGTGCAGGGTGGACTCTT---GGATGTTGTAGTCTGAGAGA 87956216
Query 39121 G--TTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTC-GGTGGGC 39177
| | || | || || |||||||||| |||||||| |||||||||||||| ||||||
Sbjct 87956215 GAGTGCGGCCATCTTCCAGCTGTTTGCTGGCAAATATCAGACGCTGCTGGTCAGGTGGG- 87956157
Query 39178 ACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACG 39237
| | ||| ||||| ||||| ||||| || | | || || || | ||| ||
Sbjct 87956156 ATACCCTCCTTGTCTTGAATTTTGGCTTTGACGTTCTCAATGGTGTCACTGGGCTCGACC 87956097
Query 39238 TCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCATCTTTACG 39291
|| | ||||| |||| |||| || || || |||||||| ||||| ||| ||
Sbjct 87956096 TCAAGGGTGATGGTTTTGCCCGGGAGGGTCTTCACAAAGATCTGCATGTTTGCG 87956043
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 429505808103713
| Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |